DY262701

Overview
NameDY262701
Unique NameDY262701
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1283
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262701 vs. ExPASy Swiss-Prot
Match: PHG1B_DICDI (Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.175e-19
Identity = 65/286 (22.73%), Postives = 127/286 (44.41%), Query Frame = 1
Query:  163 FVKGDELYVKVNKLT--STKTQLPYSYYSIPYCRPKKIVDSAENLGEVLRGDRIENSPYVFKMREPQMCNVICRLILDAKTAKAFKEKIDDEYRVNMILDNLPLVFPIRRLDQESPTVYQLGFHVGLKGQYTGTKDEKYFIHNHLAFTVKYHRDIQTDYARIVGFEVKPFSVKHEYEGNWNEKTRLTTCDPHSKHTVVNSNTPQEVAENKEIIFTYDVEFQESDVKWASRWDAY--LLMSDDQIHWFSIVNSLMIVLFLSGMVAMIMLRKLYRDLFQYNELETQEE 1008
            F + DE+   VN +   S  T+  Y +Y++P+C+P  I      LGE+L+GD    S Y F  +       +C   L  +  + FK+ I + Y   MI D+LP+   +  +D    T                  + +Y+++NH+ F                           E++ N ++  R+     H K  V+  +   E+     +  TY  ++Q ++ +++ R D Y      + +IHW S++NS  +V+ L+  +A+++++ L  D  +Y++ + +E+
Sbjct:   29 FKENDEVPFYVNNVGPYSNPTET-YEFYTLPFCKPSSISYKKTKLGEILQGDSAVLSDYQFPFKSSFENKQLCEYTLKKEDIEKFKKAIGEYYYAEMIYDDLPIFSFVGTVDDSDLT------------------NIRYYLYNHIPF---------------------------EFDYNGDQVIRVNIDTEHIK--VIELSDQDEIT----LKLTYSAKWQPTEHEFSKRMDLYEEFFTKELEIHWLSVMNSFFLVVLLTAFLAIMIMKILKNDYSRYSKTDEEED 262          

HSP 2 Score: 26.1794 bits (56), Expect = 6.175e-19
Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = 3
Query: 1014 EKTGWKLVHGDV 1049
            E  GWKLVHGDV
Sbjct:  267 EDYGWKLVHGDV 278          
BLAST of DY262701 vs. ExPASy Swiss-Prot
Match: TM9S1_PONAB (Transmembrane 9 superfamily member 1 OS=Pongo abelii GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.521e-18
Identity = 79/303 (26.07%), Postives = 134/303 (44.22%), Query Frame = 1
Query:  100 VVLLLIHGSHSFYLPGVAPQDFVKGDELYVKVNKLTSTKT-QLPYSYYSIPYCRPKKIVDSAENLGEVLRGDRIENSPYVFKMREPQMCNVICRLILDAKTAKAFKEKIDDEYRVNMILDNLPLVFPIRRLDQES--PTVYQLGFHVGLKGQYTGTKDEKYFIHNHLAFTVKYHRDIQTDYARIVGFEVKPFSVKHEYEGNWNEKTRLTTCDPHSKHTVVNSNTPQEVAENKEIIFTYDVEFQESDVKWASRW----DAYLLMSDDQIHWFSIVNSLMIVLFLSGMVAMIMLRKLYRDLFQYN 987
            +++LL+   H   + GV    +  GD + + VNK+      Q  Y YY +P C P+KI   + +LGEVL GDR+  S Y  + RE     ++C + L +   +  ++ I++ Y    ++D+LP+   +  +++    P  +++G                  +  HL F +++  D      RI+   V    VK                 PHS    ++   P E      +   Y V + E+ V+  S      D        +IHW SI+NS+++V  L G VA+I++R L  DL +YN
Sbjct:   17 ILILLLGTGHGPGVEGVT--HYKAGDPVILYVNKVGPYHNPQETYHYYQLPVCCPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFLPHSHKIG------------------LWTHLDFHLEFRGD------RIIFANVSVRDVK-----------------PHS----LDGLRPDEFLG---LTHAYSVRWSETSVERRSDRRHGDDGGFFPRTLEIHWLSIINSMVLVFLLVGFVAVILMRVLRNDLARYN 269          

HSP 2 Score: 21.557 bits (44), Expect = 8.521e-18
Identity = 16/43 (37.21%), Postives = 20/43 (46.51%), Query Frame = 3
Query: 1023 GWKLVHGDVSGPPLIRINPGSCSKWGFVFWK-DVGSIIFALLG 1148
            GWK++H DV   P  R    +    G  F     G I+ ALLG
Sbjct:  289 GWKIIHTDVFRFPPYRGLLCAVLGVGAQFLALGTGIIVMALLG 331          
The following BLAST results are available for this feature:
BLAST of DY262701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PHG1B_DICDI6.175e-1922.73Putative phagocytic receptor 1b OS=Dictyostelium d... [more]
TM9S1_PONAB8.521e-1826.07Transmembrane 9 superfamily member 1 OS=Pongo abel... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CG10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262701 ID=DY262701; Name=DY262701; organism=Citrus clementina; type=EST; length=1283bp
AGAGAGAGAGAGGGAGAGAGAGTCTCTTCTCTGAAAAAAAACACAAAAAT
GAAATCTCGAACGAGATCCACGTCGGCGACGACGGCGATCGTGACTTTCG
TTGTTCTCCTTCTGATCCACGGCTCCCACTCTTTCTACCTCCCCGGCGTC
GCTCCTCAGGACTTCGTGAAGGGAGATGAATTGTATGTGAAAGTCAACAA
ATTGACCTCTACGAAGACACAGCTTCCTTACTCGTATTACTCTATTCCAT
ACTGTCGACCAAAGAAAATCGTGGACAGTGCAGAGAACCTTGGAGAAGTG
CTTCGTGGTGACCGCATTGAAAACTCCCCTTATGTGTTTAAAATGAGGGA
ACCTCAAATGTGCAATGTTATTTGTCGGCTTATCCTTGACGCTAAAACTG
CAAAGGCATTCAAGGAAAAGATTGATGACGAATATCGGGTTAACATGATT
CTCGATAATCTTCCCCTCGTTTTTCCCATTAGAAGGTTGGATCAGGAATC
TCCTACTGTTTATCAGCTTGGCTTTCATGTTGGCCTGAAAGGCCAATATA
CGGGGACCAAGGATGAAAAGTATTTTATCCACAATCATTTGGCATTTACT
GTCAAGTATCATAGGGACATCCAAACAGATTATGCAAGAATTGTGGGATT
TGAAGTCAAACCATTCAGTGTGAAACATGAATATGAAGGGAACTGGAATG
AGAAGACTCGTTTAACAACCTGTGACCCCCATTCAAAACACACCGTTGTT
AATTCCAATACTCCGCAAGAAGTTGCAGAGAACAAAGAAATCATATTCAC
ATATGATGTTGAGTTCCAGGAGAGTGATGTGAAGTGGGCTTCTAGATGGG
ATGCATATCTTTTAATGAGCGACGATCAAATACACTGGTTCTCCATTGTC
AATTCATTGATGATTGTTCTCTTCTTGTCGGGCATGGTAGCAATGATAAT
GCTGCGGAAACTTTATCGTGACCTTTTCCAGTACAATGAACTTGAAACCC
AGGAGGAGCTTCAGAAAAAACGGGTTGGAAACTTGTTCATGGGGATGTTT
CAGGCCCCCCATTAATTCGGATCAACCCTGGGTCTTGTTCGAAATGGGGG
TTCGTTTTTTGGAAAGATGTTGGTTCCATAATTTTTGCCCTTCTGGGGTT
CCCCTCCCCCTTTCAAACCCGGGGGGGGGCTTAAGAAGGGGCCTGCCCCC
CCTTTCCGGGGCCCTTTCTGGGGGTTCTTTTTTTGGGGGGTTTGCGCCCC
CCTGCCCCCCCCGGTGAAAAAAAGGTTTGTTTT
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