DY262705

Overview
NameDY262705
Unique NameDY262705
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1178
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: ATG21_PICAN (Autophagy-related protein 21 OS=Pichia angusta GN=ATG21 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.639e-22
Identity = 75/252 (29.76%), Postives = 120/252 (47.62%), Query Frame = 2
Query:  365 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLA--NPRGLCCL-----------SHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDKTEITSNALSPTVQWLAGARDKGRV 1081
            L S+S+NQDY C AAG    +++YNC+PF E F++    GG  +VEMLF  +++A+VG GD       K+ I +  +   I E  F + +  VK++R R+VVVL  +I+VY    +KLLH IE  A  + R +C L              SS  + A  G     V  +   +  I +I  H S +                 +GT++R+F    G ++ +  +G    +I+  + +     L  + + G V
Sbjct:    3 LRSISFNQDYTCLAAGFDAAYKVYNCDPFGECFQK-ADDGGANLVEMLFSTSLIAVVGIGDKPANTMRKLKIINTKRKAVICELTFPTAILYVKMNRKRLVVVLVDQIFVYDVSCMKLLHSIEASAGLDDRIICDLCADDESVLVFQQSGSSDELAANAGT---VVVFDALQIQPINVIECHRSPLQRIAVSKDGRLLATASVKGTIVRVFRVADGRKVHEFRRGSYTAQISCLSFNVDATVLCCSSNTGTV 250          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: ATG18_PENCW (Autophagy-related protein 18 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=atg18 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.639e-22
Identity = 75/246 (30.49%), Postives = 118/246 (47.97%), Query Frame = 2
Query:  374 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQR----------------------GQVRI-EHFGLNMIKLINAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDKTEITSNALSPT 1042
            V++NQDY   A  TS GF+I+  EPF +++  + K G   ++EMLF  +++AL+         P ++ I +  +   I E  F + V +VKL+R R+V+VLE +IY+Y    +KLL  I+T  NP  +C L+  S    +A P  Q+                      G V I +   L  I +I AH S +A                +GT+IRIF+   G +L +  +G   + I S + + T
Sbjct:    6 VTFNQDYSYLAVATSKGFQIFTTEPFAKSY--EAKEGNIAVIEMLFSTSLVALI-------LSPRRLQIQNTKRQCTICELTFPTTVLAVKLNRKRLVIVLEDQIYLYDIQTMKLLSTIDTSPNPNAICALAPSSENCYMAYPLPQKAPAAASTPAHAPPGTTHVSPTTGDVLIFDAVKLEAINVIEAHRSPLALIALNSDGTLLATASDKGTIIRIFSVPDGHKLYQFRRGSMPSRIYSMSFNTT 242          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: ATG18_DEBHA (Autophagy-related protein 18 OS=Debaryomyces hansenii GN=ATG18 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.639e-22
Identity = 75/278 (26.98%), Postives = 124/278 (44.60%), Query Frame = 2
Query:  374 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLSHHS----STSVLACP--------------------GLQRGQVRIEHFG----------------LNMIKLINAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDKTEITSNALSPTVQWLAGARDKGRVKI 1087
            +++NQD  C A G   G++I+NC+P      +  K+     +EML+  +++A+VG G+     P K+ I +  +   I E  F S +  VKLS+ R++++LE +IY+Y    +KLLH IET  N  GLC LS  +    + S LA P                    G+   Q  I+                   L  + +I AH S +A                +GT++R+F+   G +L +  +G   T+I + + S   +++      G V I
Sbjct:   42 ITFNQDASCIALGLKNGYKIFNCKPNFGKCYQFKKNESIGKIEMLYCTSLIAIVGLGEEVGSSPRKLKIINTRRQSTICELIFPSTILQVKLSKSRMIILLEEQIYIYDVTTMKLLHTIETSPNGNGLCTLSADNCDGKNNSYLAYPSPPKTITHDSLLVNGINTNGGMNSIQNNIQSVSNSPNRIGDVIIFNTTTLQPLSVIEAHKSALAAITLSTDGTLLATASDKGTIVRVFSVATGLKLYQFRRGTYPTKIFTLSFSFDNKYVLATSSSGTVHI 319          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: ATG18_PICST (Autophagy-related protein 18 OS=Pichia stipitis GN=ATG18 PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.806e-21
Identity = 73/277 (26.35%), Postives = 121/277 (43.68%), Query Frame = 2
Query:  374 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLS---HHSSTSVLACPGLQRGQVR---------------------------------IEHFGLNMIK---LINAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDKTEITSNALSPTVQWLAGARDKGRVKI 1087
            +++NQD  C A G + G++I+NC+P      +  K     I+EML+  ++LA+V  G+     P K+ I +  +   I +  F S +  VKL++ R++V+LE +IY+Y    +KLLH IET  N  GLC LS    +   + LA P   +                                     +  F LN ++   +I AH S +A                +GT++R+F+   G +L +  +G   T+I S + S    ++        V I
Sbjct:   44 ITFNQDASCIAVGLNNGYKIFNCKPKFGKCYQIRKEESVGIIEMLYCTSLLAIVALGEEPGSSPRKLKIVNTKRQTTICDLIFPSTILQVKLTKSRLIVLLEEQIYIYDITTMKLLHTIETSPNSIGLCALSTTPDNDGNNYLAYPSPPKTITHDSLLASGINTNGGTNSVVNNISSVSNSPNRVGDVIMFNLNTLQPMSVIEAHKSALAAITLSSDGSLLATASDKGTIVRVFSVATGVKLFQFRRGTYSTKIYSLSFSSDNNYVVATSSSETVHI 320          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: ATG18_NEUCR (Autophagy-related protein 18 OS=Neurospora crassa GN=atg-18 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 4.023e-21
Identity = 78/276 (28.26%), Postives = 121/276 (43.84%), Query Frame = 2
Query:  374 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI------------------IWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLSHHSSTSVLACP-----------------------GLQRGQVRI-EHFGLNMIKLINAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDKTEITSNA--LSPTVQWLAGARD 1069
            +++NQDY C A GTS GFR Y+ +PF + F  D   G   I+EMLF  +++AL+      +   TKV                   I    ++  I E  F S V +V+L+R R+ VVLE +IY+Y   ++ L+  I+T  NP  +C LS  S +  L  P                         +RG V + +   L  + ++ AH S +                  GT+IR+F+   G +L +  +G   T I S +  LS T+  ++   D
Sbjct:    9 ITFNQDYSCLAVGTSKGFRFYHTDPFSKIFSSD--EGNVSIIEMLFSTSLVALILTPRQLEIQNTKVDQPSQRHCLASELRLMRRPILPTQRASVICELTFPSAVLAVRLNRKRLAVVLECQIYLYDVSNMNLVQTIDTSPNPNAICALSPSSDSCYLVYPRPNPREDVGAKAPAHLPPPSQYVPPKRGDVLVYDALNLKTVNVVEAHKSPLCAIALNHDGSMLATASETGTIIRVFSLPQGQKLFQFRRGTVPTSIYSMSFNLSSTLLCVSSTSD 282          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: HSV2_YEAST (SVP1-like protein 2 OS=Saccharomyces cerevisiae GN=HSV2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 5.255e-21
Identity = 83/289 (28.72%), Postives = 123/289 (42.56%), Query Frame = 2
Query:  362 ELISVSWNQDYGCFAAGTSCGFRIYNCEP--------FKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLC---------------CLSHHSST----------SVLACPGLQ-RGQVRI-------------EHFGLNMIKLINAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDKTEITSNALSPTVQWLAGARDKGRVKI 1087
            + +SVS+NQD  CF+     GFRI+N +P        FKE+     +  G     ML+R N +ALVG G   ++   K+IIWDD   +      F S ++ V LSR  IVVVLE+ I ++ F             NP+ +C               C S H  +           ++A P  +  GQ+++             +   L    +I AH + I                 +GTLIRIF+T  GT + +  +GVDK +I   + SP    LA   +K  + I
Sbjct:   18 KFLSVSFNQDDSCFSVALENGFRIFNTDPLTSKLSKTFKESATNQSRGTGIGYTRMLYRTNYIALVGGGKRPRHALNKLIIWDDLLQKETITLKFMSSIKDVFLSRIHIVVVLENTIEIFQF-----------QTNPQRICPILDIPPNGSVDYVVCSSKHLQSQASQSQSKILEIIAFPSNKCVGQIQVADLSQIKYNSQNPKESALLPTSIIKAHKNPIKLVRLNRQGTMVATCSVQGTLIRIFSTHNGTLIKEFRRGVDKADIYEMSFSPNGSKLAVLSNKQTLHI 295          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: HSV2_CANGA (SVP1-like protein 2 OS=Candida glabrata GN=HSV2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.997e-20
Identity = 84/294 (28.57%), Postives = 119/294 (40.48%), Query Frame = 2
Query:  356 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKS-----GGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLC----------CLSHHSSTSVLACPGLQ-RGQVRIEHF------------------GLNMIKLINAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDKTEITSNALSPTVQWLAGARDKGRVKI--SSPGLRGLEGPLSP 1129
            E    SV++NQD  CF+     GF +YN  P      ++ K       G    +ML+R N +ALVG G   +Y   +V+IWDD Q +      F S VR V LSR  +VV LE+++++YSF     L        P G                   TS+LA P  +  GQ+ +                           +I AH + I                 +GTLIRIF+T  G  L +  +G+D+ EI     SP    LA   DK  + +   +P   G   P +P
Sbjct:   14 ETGFASVTFNQDESCFSCANEQGFLVYNTFPLSLKLTKEFKQTPERGAGIGYSQMLYRTNYIALVGGGQRPRYSLNRVVIWDDLQQKESFSLKFMSIVRKVVLSRVHLVVALENELFIYSFHSTPKLLCPPIKTAPFGPFDFKVVTIEGKATDQAKVTSLLAYPSAKLTGQLHVADLSKLRSNQNNNQDMALTSESFLPTTIIKAHKAPIRNVRINNQGTMVATASRKGTLIRIFSTHNGILLKEFRRGLDRAEIYDMCFSPLGTRLAVVSDKQTLHVFQIAPMAEGTLNPANP 307          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: ATG18_SCHPO (Autophagy-related protein 18 OS=Schizosaccharomyces pombe GN=atg18 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.608e-20
Identity = 72/231 (31.17%), Postives = 105/231 (45.45%), Query Frame = 2
Query:  410 GTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQRGQVRIEH---------------------FGLNMIKLINAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDKTEITSNALSP 1039
            GT  G++IYNC+PF + F +    G   IVEMLF  +++ALV   D +     K+ + +  +S  I E  F + + +VKL+R R++ VLE +IYVY   ++ LLH IET +N   +C LS +S    LA P  +  + R E                           I  I AH   +AC                G +IR+F    G RL +  +G    +I S A  P
Sbjct:   18 GTFDGYKIYNCDPFGKCFHKI--QGATSIVEMLFSTSLVALVEKDDGNN---RKLKLINTKKSTTICELTFPTPLLAVKLNRKRLLAVLEEQIYVYDISNMLLLHTIETTSNVFAVCALSPNSENCYLAYPDSRDHEPRTEGESSSPNVSNSAVSGQVILWDVINCKQITKIEAHKDSLACLAFNSDGTMLATASDNGRIIRVFAIPSGQRLYQFRRGSLPAQIYSIAFHP 243          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: ATG18_CHAGB (Autophagy-related protein 18 OS=Chaetomium globosum GN=ATG18 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.406e-20
Identity = 71/243 (29.22%), Postives = 113/243 (46.50%), Query Frame = 2
Query:  344 SDVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLSHHSSTSVLAC----PGLQRGQVRIEH-----------FGLNM---------IKLINAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKG 1000
            +D+   +L  V++NQD+ C A  TS GFRIY+ +PF + F  D   G   I+EMLF  +++A+V +       P  ++I +  +   I +  F + V +V+L+R  + VVLE +IYVY   ++ L H I T  NP  +  LS  S  S +A     P   +G+ R  H            G  M         + +I AH   + C               RGT++R+ +   G +L +  +G
Sbjct:    2 ADLSNTKLNYVTFNQDHSCLAVATSRGFRIYHTDPFSKIFNSD--EGNVTIIEMLFSTSLVAMVRS-------PRHLVIQNTKRGSIICDLTFPTAVLAVRLNRKTLAVVLEEEIYVYDIGNMALKHTIATSPNPNAIFALSPMSDRSYIAYPMPKPREDQGERRPAHAPPLSEYVPPTSGALMVFDTTAGKAVNVIEAHKMPLCCIALNHEGTKVATASERGTIVRVHSVPEGHKLFEFRRG 235          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: WIPI2_RAT (WD repeat domain phosphoinositide-interacting protein 2 OS=Rattus norvegicus GN=Wipi2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 8.389e-19
Identity = 71/248 (28.63%), Postives = 123/248 (49.60%), Query Frame = 2
Query:  362 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFK--ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQI-ETLANPRGLCCLSHHSSTSVLACPGLQR-GQVRI-EHFGLNMIKLINAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDK-TEITSNALSPTVQWLAGARDKGRVKI 1087
            +L+  ++NQD    A G+  G++ ++       E       +    IVE LF  +++A+V     S   P K+ +    +   I  +++ + + +VKL+R R++V LE  +Y+++  D+K+LH I ET  NP GLC LS ++    LA PG    G+V++ +   L    +I AHDS +A                +GT+IR+F+   G +L +  +GV +   I S A S    +L+ + +   V I
Sbjct:   14 QLLFANFNQDNTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAIV-----SLKAPRKLKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLYIHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDGMFLSASSNTETVHI 256          
The following BLAST results are available for this feature:
BLAST of DY262705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
ATG21_PICAN3.639e-2229.76Autophagy-related protein 21 OS=Pichia angusta GN=... [more]
ATG18_PENCW3.639e-2230.49Autophagy-related protein 18 OS=Penicillium chryso... [more]
ATG18_DEBHA3.639e-2226.98Autophagy-related protein 18 OS=Debaryomyces hanse... [more]
ATG18_PICST1.806e-2126.35Autophagy-related protein 18 OS=Pichia stipitis GN... [more]
ATG18_NEUCR4.023e-2128.26Autophagy-related protein 18 OS=Neurospora crassa ... [more]
HSV2_YEAST5.255e-2128.72SVP1-like protein 2 OS=Saccharomyces cerevisiae GN... [more]
HSV2_CANGA1.997e-2028.57SVP1-like protein 2 OS=Candida glabrata GN=HSV2 PE... [more]
ATG18_SCHPO2.608e-2031.17Autophagy-related protein 18 OS=Schizosaccharomyce... [more]
ATG18_CHAGB3.406e-2029.22Autophagy-related protein 18 OS=Chaetomium globosu... [more]
WIPI2_RAT8.389e-1928.63WD repeat domain phosphoinositide-interacting prot... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CH02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262705 ID=DY262705; Name=DY262705; organism=Citrus clementina; type=EST; length=1178bp
TTCCTTTACGTCTCTCTCTGTGAGTCGGGATGAATTGAATCTCTCTCTCT
CTCTCTCTCTCTCTCTTTCAGATCTCTCACAAAGCGAAAGAGAAAATTTG
ATCTGATGATCATTAATTTGATTTCTCATATCACAGCATCAAGGGGGTGC
CACTGAAATTATTCACAATCGAGAAGATTTTCATCTTTGATTGCTGCTGC
TGCTGCTGACCGTTTCTTCGTCCCACATGACTTCAACTGTTTCGACATCT
CGAGAAATTCTTCCACCGGGCCCCTTTGGATCCCCCAATGCTGGCGCTTC
GGCTTCGGCTTCGGCTTCATTTGGCCACCCGCAAACGGCGTTCAGTGATG
TTGATGAAATTGAGTTGATCTCTGTGTCTTGGAACCAGGACTATGGTTGT
TTTGCCGCTGGAACTAGTTGTGGGTTTCGAATTTATAATTGTGAGCCGTT
TAAGGAAACTTTTAGACGTGATTTGAAAAGTGGTGGGTTTAGGATTGTTG
AGATGTTGTTTCGTTGTAATATATTGGCACTCGTTGGTGCTGGGGATAAT
TCTCAGTATCCTCCTACTAAAGTTATTATTTGGGATGATCATCAGAGCAG
GTGCATTGGTGAGTTTGCGTTTAGGTCTGATGTTCGCTCTGTGAAATTGA
GTAGGGATCGAATTGTGGTTGTTCTTGAGCATAAGATATATGTTTATAGT
TTTGTTGATCTCAAGTTGCTTCATCAGATTGAGACTCTTGCGAATCCGAG
GGGGCTTTGTTGTCTTTCTCATCATTCGAGTACTTCTGTGTTGGCTTGCC
CGGGTCTCCAACGTGGACAGGTTCGCATTGAGCACTTTGGGCTCAATATG
ATAAAGCTAATAAATGCTCATGATTCTCATATTGCGTGCTTTACCCTCAC
ATTGGATGGCCTGCTTCTTGCTACTGCTAGTACCAGGGGCACTTTGATAA
GAATTTTCAACACCGTGGGAGGTACTCGCTTGGCAAAAGTTCCAAAAGGT
GTTGACAAAACAGAGATTACCAGTAATGCTCTGTCCCCAACCGTCCAATG
GTTGGCGGGGGCAAGGGACAAAGGCCGGGTCAAAATTTCGTCCCCGGGGT
TAAGGGGGTTGGAAGGACCCCTCTCCCCCCCTTTTACCCTTTCCCAAAAG
ACAAAATTTCTAAACCTTTCTTTTCTTT
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