DY262705

Overview
NameDY262705
Unique NameDY262705
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1178
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: WIPI2_MOUSE (WD repeat domain phosphoinositide-interacting protein 2 OS=Mus musculus GN=Wipi2 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 8.389e-19
Identity = 71/248 (28.63%), Postives = 123/248 (49.60%), Query Frame = 2
Query:  362 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFK--ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQI-ETLANPRGLCCLSHHSSTSVLACPG-LQRGQVRI-EHFGLNMIKLINAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDK-TEITSNALSPTVQWLAGARDKGRVKI 1087
            +L+  ++NQD    A G+  G++ ++       E       +    IVE LF  +++A+V     S   P K+ +    +   I  +++ + + +VKL+R R++V LE  +Y+++  D+K+LH I ET  NP GLC LS ++    LA PG    G+V++ +   L    +I AHDS +A                +GT+IR+F+   G +L +  +GV +   I S A S    +L+ + +   V I
Sbjct:   14 QLLFANFNQDNTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAIV-----SLKAPRKLKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLYIHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSASIGEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDGMFLSASSNTETVHI 256          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: WIPI2_CHICK (WD repeat domain phosphoinositide-interacting protein 2 OS=Gallus gallus GN=WIPI2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.096e-18
Identity = 72/253 (28.46%), Postives = 123/253 (48.62%), Query Frame = 2
Query:  347 DVDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFK--ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQI-ETLANPRGLCCLSHHSSTSVLACPGLQR-GQVRI-EHFGLNMIKLINAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDK-TEITSNALSPTVQWLAGARDKGRVKI 1087
            D     L+  ++NQD    A G+  G++ ++       E       +    IVE LF  +++A+V     S   P K+ +    +   I  +++ + + +VKL+R R++V LE  +Y+++  D+K+LH I ET  NP GLC LS ++    LA PG    G+V++ +   L    +I AHDS +A                +GT+IR+F+   G +L +  +GV +   I S A S    +L+ + +   V I
Sbjct:    9 DAGSGHLLFANFNQDNTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAIV-----SLKAPRKLKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLYIHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDGMFLSASSNTETVHI 256          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: WIPI2_XENLA (WD repeat domain phosphoinositide-interacting protein 2 OS=Xenopus laevis GN=wipi2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.102e-18
Identity = 71/248 (28.63%), Postives = 121/248 (48.79%), Query Frame = 2
Query:  362 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFK--ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQI-ETLANPRGLCCLSHHSSTSVLACPG-LQRGQVRI-EHFGLNMIKLINAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDK-TEITSNALSPTVQWLAGARDKGRVKI 1087
            +L+  ++NQD    A G+  G++ ++       E       +    IVE LF  +++A+V     S   P K+ +    +   I  +++ +   +VKL+R R++V LE  +Y+++  D+K+LH I ET  NP GLC LS +     LA PG    G+V++ +   L    +I AHDS +A                +GT+IR+F+   G +L +  +GV +   I S A S    +L+ + +   V I
Sbjct:   14 QLLFANFNQDNTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAIV-----SLKAPRKLKVCHFKKGTEICNYSYSNTTLAVKLNRQRLIVCLEESLYIHNIRDMKVLHTIRETPPNPSGLCSLSINGENCYLAYPGSASIGEVQVFDTVNLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDSIFLSASSNTETVHI 256          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: ATG18_LODEL (Autophagy-related protein 18 OS=Lodderomyces elongisporus GN=ATG18 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.102e-18
Identity = 69/272 (25.37%), Postives = 120/272 (44.12%), Query Frame = 2
Query:  350 VDEIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSG--------GFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQR------------GQVRIEH------------------------FGLNM---IKLINAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDKTEITS 1024
            + E+ +  +++NQD  C A G   G++I N +         LK G           ++EML+  +++ +   G+     P ++ I +   +  I    F + + ++KL+RD ++VVLE++IY+Y    +KLL  I+T +NP GLC +S+   T++LA P   +            G  +  H                        F LN    I  I+AH + IA                +GT++R+F+T  G +L +  +G   T+I S
Sbjct:    1 MSELPVTHLNFNQDTSCVALGLMTGYKIVNIQ---------LKFGKCCCYNDDSINLIEMLYTTSLIVMTPLGNEIGSSPRELKIKNTKTNSTICSLFFPTTILNIKLTRDHLIVVLENQIYIYEIKTMKLLQTIKTDSNPLGLCAVSYDQETNLLAFPSPPKAKDALASMRSSSGNAKSTHAAGTSHNSHNGANKGTVFKGDLILFDLNKFQPIMAISAHKNDIAAVAFSADGTLISTASHKGTIVRVFDTNTGVKLFQFRRGSYPTKIYS 263          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: ATG18_VANPO (Autophagy-related protein 18 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=ATG18 PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 9.276e-18
Identity = 48/136 (35.29%), Postives = 78/136 (57.35%), Query Frame = 2
Query:  374 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLSHHSS 781
            +++NQ   C +  T  GF IYNC+PF + + +      + IVEMLF  ++LA+VG GD       ++ + +      I E  F S + SVK+++ R+VV+L  +IY+Y   +++LLH IET +N  G+  +S   S
Sbjct:   12 INFNQTGSCISIATDDGFSIYNCDPFGKFYSQK----NYSIVEMLFSTSLLAVVGLGDQPALSQRRLTMINTKTYSIICEVTFPSAILSVKMNKSRLVVLLRDQIYIYDINNMRLLHTIETTSNKLGIISISSSPS 143          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: WIPI1_HUMAN (WD repeat domain phosphoinositide-interacting protein 1 OS=Homo sapiens GN=WIPI1 PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 1.211e-17
Identity = 71/253 (28.06%), Postives = 125/253 (49.41%), Query Frame = 2
Query:  356 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRI-----VEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQ-IETLANPRGLCCLSHHSSTSVLACPG-LQRGQVRI-EHFGLNMIKLINAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDK-TEITSNALSPTVQWLAGARDKGRVKI 1087
            E  L   S+NQD    A GT  G+++++    ++    D   G   I     VE LF  +++ +V     S   P ++ ++   +   I  +++ S++ S++L+R R++V LE  IY+++  D+KLL   ++  ANP GLC LS + S S LA PG L  G++ + +   L  +  I AH+  +A                +GT+IR+F+   G +L +  +G+ +   I+S   S   Q+L  + +   V I
Sbjct:   14 ESALSCFSFNQDCTSLATGTKAGYKLFSLSSVEQL---DQVHGSNEIPDVYIVERLFSSSLVVVV-----SHTKPRQMNVYHFKKGTEICNYSYSSNILSIRLNRQRLLVCLEESIYIHNIKDMKLLKTLLDIPANPTGLCALSINHSNSYLAYPGSLTSGEIVLYDGNSLKTVCTIAAHEGTLAAITFNASGSKLASASEKGTVIRVFSVPDGQKLYEFRRGMKRYVTISSLVFSMDSQFLCASSNTETVHI 258          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: HSV2_ASHGO (SVP1-like protein 2 OS=Ashbya gossypii GN=HSV2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.582e-17
Identity = 74/268 (27.61%), Postives = 112/268 (41.79%), Query Frame = 2
Query:  368 ISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIV---EMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSF------------------VDLKLLHQIETLANPRGL--CCLSHHSSTSVLACP-GLQRGQVRI----------------EHFGLNMIKLINAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDKTEITSNALSPTVQW 1051
            + V++NQD  CF+  T  GF IYN +P + + +R     G   +    ML+R N + LVG G + ++   K+ IWDD Q R      F S V  + LSR  IVVVL   I VY+F                   D     ++   + P+ +       H    +LA P G++ GQ+ I                 H   ++IK   AH + I                  GTLIR+F+   G+ + +  +G+D+      AL   +QW
Sbjct:   19 LHVNFNQDQECFSCATEKGFEIYNTDPIQCSVKRRFSHNGMSGIGYTRMLYRTNYIGLVGGGASPRFSTNKIAIWDDIQQRDSVSIRFNSPVHELFLSRQYIVVVLAQSIDVYTFSGSPSRVCPVISNIHNGIADFVTCSKMRRASGPQDVEHALSQKHVIAGILAYPSGIRPGQIHIADLSNIQTPSVADASATHLPTSIIK---AHKNPIHLVKLSPQGTMVATCSVEGTLIRVFSIASGSLIHEFRRGLDR------ALIYDMQW 277          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: WIPI1_XENLA (WD repeat domain phosphoinositide-interacting protein 1 OS=Xenopus laevis GN=wipi1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.699e-17
Identity = 68/250 (27.20%), Postives = 123/250 (49.20%), Query Frame = 2
Query:  362 ELISVSWNQDYGCFAAGTSCGFRIYNCEPFK--ETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQ-IETLANPRGLCCLSHHSSTSVLACPG-LQRGQVRIEHFGLNMIK---LINAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDK-TEITSNALSPTVQWLAGARDKGRVKI 1087
            ++  +S+NQD    A G   G+++Y+    +  +      ++    IVE LF  +++ +V     S   P ++ +    +   I  + +  ++ S++L+R R++V LE  IY+++  D+KLL   ++T  NP GLC LS + S S LA PG    G+V +  +  N +K    I AHDS +A                +GT+IR+F+   G +L +  +G+ +   I+S   S   Q+L  + +   V +
Sbjct:   12 DICCLSYNQDCTSVAIGMRSGYKLYSLSNVERLDLVHESCEAKDVYIVERLFSSSLVVVV-----SHAKPRQMNVLHFKKGTEICNYNYSDNILSIRLNRQRLIVCLEESIYIHNIKDMKLLKTLLDTPRNPHGLCTLSINHSNSYLAYPGSSSTGEVSL--YDANCLKCECTIPAHDSPLAAIAFNSTGTKLASASEKGTVIRVFSIPDGQKLYEFRRGMKRYVNISSLVFSMDSQFLCASSNTETVHV 254          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: WIPI1_MOUSE (WD repeat domain phosphoinositide-interacting protein 1 OS=Mus musculus GN=Wipi1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.699e-17
Identity = 70/253 (27.67%), Postives = 125/253 (49.41%), Query Frame = 2
Query:  356 EIELISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRI-----VEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQI-ETLANPRGLCCLSHHSSTSVLACPGLQ-RGQVRI-EHFGLNMIKLINAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDK-TEITSNALSPTVQWLAGARDKGRVKI 1087
            E  L   S+NQD    A GT  G+++++    ++    D   G   I     VE LF  +++ +V     S   P ++ ++   +   I  +++ S++ S++L+R R++V LE  IY+++  D+KLL  + +  +NP GLC LS + S S LA PG Q  G++ + +   L  +  I AH+  +A                +GT+IR+F+   G +L +  +G+ +   I+S   S   Q+L  + +   V I
Sbjct:   14 EAALSCFSFNQDCTSLAIGTKAGYKLFSLSSVEQL---DQVHGSNEIPDVYIVERLFSSSLVVVV-----SHTKPRQMNVYHFKKGTEICNYSYSSNILSIRLNRQRLLVCLEESIYIHNIKDMKLLKTVLDIPSNPTGLCALSINHSNSYLAYPGSQSTGEIVLYDGNSLKTVCTIAAHEGTLAAITFNSSGSKLASASEKGTVIRVFSVPEGQKLYEFRRGMKRYVTISSLVFSMDSQFLCASSNTETVHI 258          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: ATG18_PHANO (Autophagy-related protein 18 OS=Phaeosphaeria nodorum GN=ATG18 PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 6.012e-17
Identity = 63/247 (25.51%), Postives = 115/247 (46.56%), Query Frame = 2
Query:  374 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLSHHSSTSVLACP-----------------------GLQRGQVRI-EHFGLNMIKLINAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDKTEITSNALSPT 1042
            V++NQD+     GTS G+R+Y  +PF +  + + + G    +EMLF  +++AL  +    +   TK      H + C  E  FR+ + +++L+R R+VVVLE ++Y+Y   ++++L   +T  NP  +C LS  S  + L  P                           G++ I +   +  + +I AH+S ++C               +GT+IR+F+     +L +  +G     I S + + T
Sbjct:    4 VTFNQDHSHLGVGTSNGYRVYTTDPFNK--QSESREGDVSSLEMLFSTSLVALTLSPRVLRIQNTK---GKRHSTIC--EMTFRTAILAMRLNRKRLVVVLESELYIYDISNMQMLRTEKTSPNPNAICALSASSENNYLIYPLPTKAAPATFQPPSHAPPKSDHIAPTSGEILIYDATKMEAVNVIEAHNSPLSCIALNNDGTLLATASEKGTIIRVFSIPDAQKLYQFRRGSIPARIFSMSFNST 243          
The following BLAST results are available for this feature:
BLAST of DY262705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
WIPI2_MOUSE8.389e-1928.63WD repeat domain phosphoinositide-interacting prot... [more]
WIPI2_CHICK1.096e-1828.46WD repeat domain phosphoinositide-interacting prot... [more]
WIPI2_XENLA7.102e-1828.63WD repeat domain phosphoinositide-interacting prot... [more]
ATG18_LODEL7.102e-1825.37Autophagy-related protein 18 OS=Lodderomyces elong... [more]
ATG18_VANPO9.276e-1835.29Autophagy-related protein 18 OS=Vanderwaltozyma po... [more]
WIPI1_HUMAN1.211e-1728.06WD repeat domain phosphoinositide-interacting prot... [more]
HSV2_ASHGO1.582e-1727.61SVP1-like protein 2 OS=Ashbya gossypii GN=HSV2 PE=... [more]
WIPI1_XENLA2.699e-1727.20WD repeat domain phosphoinositide-interacting prot... [more]
WIPI1_MOUSE2.699e-1727.67WD repeat domain phosphoinositide-interacting prot... [more]
ATG18_PHANO6.012e-1725.51Autophagy-related protein 18 OS=Phaeosphaeria nodo... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CH02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262705 ID=DY262705; Name=DY262705; organism=Citrus clementina; type=EST; length=1178bp
TTCCTTTACGTCTCTCTCTGTGAGTCGGGATGAATTGAATCTCTCTCTCT
CTCTCTCTCTCTCTCTTTCAGATCTCTCACAAAGCGAAAGAGAAAATTTG
ATCTGATGATCATTAATTTGATTTCTCATATCACAGCATCAAGGGGGTGC
CACTGAAATTATTCACAATCGAGAAGATTTTCATCTTTGATTGCTGCTGC
TGCTGCTGACCGTTTCTTCGTCCCACATGACTTCAACTGTTTCGACATCT
CGAGAAATTCTTCCACCGGGCCCCTTTGGATCCCCCAATGCTGGCGCTTC
GGCTTCGGCTTCGGCTTCATTTGGCCACCCGCAAACGGCGTTCAGTGATG
TTGATGAAATTGAGTTGATCTCTGTGTCTTGGAACCAGGACTATGGTTGT
TTTGCCGCTGGAACTAGTTGTGGGTTTCGAATTTATAATTGTGAGCCGTT
TAAGGAAACTTTTAGACGTGATTTGAAAAGTGGTGGGTTTAGGATTGTTG
AGATGTTGTTTCGTTGTAATATATTGGCACTCGTTGGTGCTGGGGATAAT
TCTCAGTATCCTCCTACTAAAGTTATTATTTGGGATGATCATCAGAGCAG
GTGCATTGGTGAGTTTGCGTTTAGGTCTGATGTTCGCTCTGTGAAATTGA
GTAGGGATCGAATTGTGGTTGTTCTTGAGCATAAGATATATGTTTATAGT
TTTGTTGATCTCAAGTTGCTTCATCAGATTGAGACTCTTGCGAATCCGAG
GGGGCTTTGTTGTCTTTCTCATCATTCGAGTACTTCTGTGTTGGCTTGCC
CGGGTCTCCAACGTGGACAGGTTCGCATTGAGCACTTTGGGCTCAATATG
ATAAAGCTAATAAATGCTCATGATTCTCATATTGCGTGCTTTACCCTCAC
ATTGGATGGCCTGCTTCTTGCTACTGCTAGTACCAGGGGCACTTTGATAA
GAATTTTCAACACCGTGGGAGGTACTCGCTTGGCAAAAGTTCCAAAAGGT
GTTGACAAAACAGAGATTACCAGTAATGCTCTGTCCCCAACCGTCCAATG
GTTGGCGGGGGCAAGGGACAAAGGCCGGGTCAAAATTTCGTCCCCGGGGT
TAAGGGGGTTGGAAGGACCCCTCTCCCCCCCTTTTACCCTTTCCCAAAAG
ACAAAATTTCTAAACCTTTCTTTTCTTT
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