DY262705

Overview
NameDY262705
Unique NameDY262705
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1178
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: ATG18_PICGU (Autophagy-related protein 18 OS=Pichia guilliermondii GN=ATG18 PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 7.852e-17
Identity = 47/133 (35.34%), Postives = 76/133 (57.14%), Query Frame = 2
Query:  374 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSG-GFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLS 769
            +++NQD  C A G + G+ I+   PF + +  D   G    IVEML+  +++ +V  G+ +   P K+ I +  +   I +  F S +  VKL+R R++V+LE +IY+Y    +KLLH IET  N  G+C +S
Sbjct:   27 ITFNQDGSCIAVGNNKGYSIFTTNPFTKCY--DSPPGEAIGIVEMLYSTSLVVVVALGEETGSSPRKLKIINTKRGSTICDLVFPSTILKVKLTRSRMIVLLEEQIYLYDISTMKLLHTIETSPNMAGICAIS 157          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: WIPI2_HUMAN (WD repeat domain phosphoinositide-interacting protein 2 OS=Homo sapiens GN=WIPI2 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.339e-16
Identity = 63/202 (31.19%), Postives = 105/202 (51.98%), Query Frame = 2
Query:  494 IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQI-ETLANPRGLCCLSHHSSTSVLACPGLQR-GQVRI-EHFGLNMIKLINAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDK-TEITSNALSPTVQWLAGARDKGRVKI 1087
            IVE LF  +++A+V     S   P K+ +    +   I  +++ + + +VKL+R R++V LE  +Y+++  D+K+LH I ET  NP GLC LS ++    LA PG    G+V++ +   L    +I AHDS +A                +GT+IR+F+   G +L +  +GV +   I S A S    +L+ + +   V I
Sbjct:   78 IVERLFSSSLVAIV-----SLKAPRKLKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLYIHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDGMFLSASSNTETVHI 274          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: ATG18_AJECN (Autophagy-related protein 18 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=ATG18 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.090e-16
Identity = 74/261 (28.35%), Postives = 117/261 (44.83%), Query Frame = 2
Query:  458 TFRRD---LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQR-----------------------GQVRI-EHFGLNMIKLINAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDKTEITSNALSPTVQWLAGARDKGRVKISSPGLR--GLEGPLSPPFTLSQKT 1153
            TF +D   L  G   I+EMLF  +++AL+         P ++ I +  +   I E  F + V +V+L+R R+V+VLE +IY+Y    +KLL+ IET  NP  +C LS  S    LA P  Q+                       G+V I +   L  I ++ AH S ++C               +GT+IR+F+     +L +  +G   + I S + + T   L  +     + I   G +    + P SP  T S+KT
Sbjct:    7 TFNQDYSYLAVGNIAILEMLFSTSLVALI-------LSPRRLQITNTKRQSTICELTFPTTVLAVRLNRKRLVIVLEDQIYLYDIQTMKLLYTIETSPNPNAICALSPSSENCYLAYPLPQKAPPSSFTPPSHAPPSSAHISPTSGEVLIFDTLKLEAINVVEAHKSPLSCLAINTEGTLLATASDKGTIIRVFSVPDAQKLYQFRRGSMPSRIFSMSFNITSTLLCVSSATETIHIFKLGHQDPSEDLPTSPIGTDSRKT 260          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: ATG21_SCHPO (Autophagy-related protein 21 OS=Schizosaccharomyces pombe GN=atg21 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.647e-14
Identity = 66/271 (24.35%), Postives = 122/271 (45.02%), Query Frame = 2
Query:  365 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI-IWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM-IKLINAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGGTRLAKVPKGVDKTEITSNALSPTVQWLAGARDKGRV---KISSPGLRGLEGPLSPPFTLSQKTKFL 1162
            ++  SWNQD G  + G+  G+++Y   PF   F +  K+ G  I EML+  ++LA V     S    T+++ + D  +   +    + S V SV+ + +R+VV+++  IYVY+  +++L++ + T  +   +   + H +      P    G + +      + + LI+ H S +                 +GT+IR+  T  G  + ++ +G     I S +  P   +LA A + G +   KIS         P S     S  +K+L
Sbjct:    5 ILYCSWNQDRGFLSIGSENGYQVYRSNPFTLCFSK--KANGASICEMLYESSLLAFVNISPES----TRLLKLVDIKRDIVLCRIFYPSPVLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNT--SKGNVIAFAVHENYVAYNSP-TNPGDIYLASLDTAIPVTLIHCHSSAVQVVDFHPRGHLIATASAKGTVIRVITTSDGELVTELRRGYIPASIVSISFHPVEPFLACASENGTIHVFKISKQPSDPNSSPTSSVTVSSSWSKYL 266          
BLAST of DY262705 vs. ExPASy Swiss-Prot
Match: HSV2_CANAL (SVP1-like protein 2 OS=Candida albicans GN=HSV2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.297e-11
Identity = 50/141 (35.46%), Postives = 69/141 (48.94%), Query Frame = 2
Query:  383 NQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSG-----GFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSF-VDLKLLHQIETLANPRGLCCLSHHSSTS 787
            N   G   + +S G        +K T +    SG     G   + ML R N LAL+G G+N ++P  K+IIWDD + +      F + V +V LSR RI+VVL  +I VY F    K      T+ NP G+  LS +S  S
Sbjct:   96 NNSTGSNGSVSSSGSNNETTLGYKSTHKSASGSGSGSGSGIGHISMLHRTNYLALIGGGENPKFPINKLIIWDDLKRKTSLSLEFDTPVLNVLLSRVRIIVVLIDQIIVYGFAAPPKKFQTFNTINNPLGIADLSVNSQQS 236          
The following BLAST results are available for this feature:
BLAST of DY262705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
ATG18_PICGU7.852e-1735.34Autophagy-related protein 18 OS=Pichia guilliermon... [more]
WIPI2_HUMAN1.339e-1631.19WD repeat domain phosphoinositide-interacting prot... [more]
ATG18_AJECN5.090e-1628.35Autophagy-related protein 18 OS=Ajellomyces capsul... [more]
ATG21_SCHPO3.647e-1424.35Autophagy-related protein 21 OS=Schizosaccharomyce... [more]
HSV2_CANAL1.297e-1135.46SVP1-like protein 2 OS=Candida albicans GN=HSV2 PE... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100CH02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262705 ID=DY262705; Name=DY262705; organism=Citrus clementina; type=EST; length=1178bp
TTCCTTTACGTCTCTCTCTGTGAGTCGGGATGAATTGAATCTCTCTCTCT
CTCTCTCTCTCTCTCTTTCAGATCTCTCACAAAGCGAAAGAGAAAATTTG
ATCTGATGATCATTAATTTGATTTCTCATATCACAGCATCAAGGGGGTGC
CACTGAAATTATTCACAATCGAGAAGATTTTCATCTTTGATTGCTGCTGC
TGCTGCTGACCGTTTCTTCGTCCCACATGACTTCAACTGTTTCGACATCT
CGAGAAATTCTTCCACCGGGCCCCTTTGGATCCCCCAATGCTGGCGCTTC
GGCTTCGGCTTCGGCTTCATTTGGCCACCCGCAAACGGCGTTCAGTGATG
TTGATGAAATTGAGTTGATCTCTGTGTCTTGGAACCAGGACTATGGTTGT
TTTGCCGCTGGAACTAGTTGTGGGTTTCGAATTTATAATTGTGAGCCGTT
TAAGGAAACTTTTAGACGTGATTTGAAAAGTGGTGGGTTTAGGATTGTTG
AGATGTTGTTTCGTTGTAATATATTGGCACTCGTTGGTGCTGGGGATAAT
TCTCAGTATCCTCCTACTAAAGTTATTATTTGGGATGATCATCAGAGCAG
GTGCATTGGTGAGTTTGCGTTTAGGTCTGATGTTCGCTCTGTGAAATTGA
GTAGGGATCGAATTGTGGTTGTTCTTGAGCATAAGATATATGTTTATAGT
TTTGTTGATCTCAAGTTGCTTCATCAGATTGAGACTCTTGCGAATCCGAG
GGGGCTTTGTTGTCTTTCTCATCATTCGAGTACTTCTGTGTTGGCTTGCC
CGGGTCTCCAACGTGGACAGGTTCGCATTGAGCACTTTGGGCTCAATATG
ATAAAGCTAATAAATGCTCATGATTCTCATATTGCGTGCTTTACCCTCAC
ATTGGATGGCCTGCTTCTTGCTACTGCTAGTACCAGGGGCACTTTGATAA
GAATTTTCAACACCGTGGGAGGTACTCGCTTGGCAAAAGTTCCAAAAGGT
GTTGACAAAACAGAGATTACCAGTAATGCTCTGTCCCCAACCGTCCAATG
GTTGGCGGGGGCAAGGGACAAAGGCCGGGTCAAAATTTCGTCCCCGGGGT
TAAGGGGGTTGGAAGGACCCCTCTCCCCCCCTTTTACCCTTTCCCAAAAG
ACAAAATTTCTAAACCTTTCTTTTCTTT
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