DY262716

Overview
NameDY262716
Unique NameDY262716
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1218
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262716 vs. ExPASy Swiss-Prot
Match: RME6_DROPS (Receptor-mediated endocytosis protein 6 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA14078 PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 7.466e-18
Identity = 60/171 (35.09%), Postives = 89/171 (52.05%), Query Frame = 1
Query:  331 ELDSAGEGLEKYVMTKLFTRV-FASIPDDVKTDEQLSEKIALVQQFVRPEN--LDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNID 834
            ++D+A E +E+ ++  ++ +V F +   DV  D  LS  I  +Q+FV P +  L I   +  E  W  AQ++L  +  YK PR+KL CI+NC                   P AD+ LPVLIYV I ANPP L S + YI  +  + +L GE  +++T   S   FI  +D
Sbjct: 1606 QVDAAREAIERMLLELMYQQVMFPNEDADVSRDTVLSAHIGKLQRFVHPAHPALCIAQEYLGEAPWTFAQQQLCHMAAYKTPREKLQCIINCISSIMSLLRMSCGRV----PAADDLLPVLIYVVIMANPPYLLSTVEYISCFLGR-KLDGENEFYWTLFGSVVKFIKTMD 1771          
BLAST of DY262716 vs. ExPASy Swiss-Prot
Match: RME6_CAEEL (Receptor-mediated endocytosis protein 6 OS=Caenorhabditis elegans GN=rme-6 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.721e-14
Identity = 54/177 (30.51%), Postives = 81/177 (45.76%), Query Frame = 1
Query:  310 WAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPD-DVKTDEQLSEKIALVQQFVRPEN--LDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI 831
            W   ++  +  A   +E+YV+  ++   F    D D   D+ L   IA V   V P N  L I      E  W  AQ EL  +++Y   +DKL C++ CC V              +   AD+  PVL++V IKANP  L SN+ +++ +       G  AY++ N  SA  +I  I
Sbjct:  919 WNFATDTMMSRAMTTIERYVIFAVYDNAFYPNRDADHHRDKLLRGTIAKVSDVVTPVNDFLKIPEHLHGEAPWPSAQAELSMLDIYVTAQDKLNCVVRCCDVINNLVALSSKNAVAS---ADDLTPVLVFVIIKANPRALLSNVQFVETFAGDRIESGRDAYYWVNFKSAVEYIKTI 1092          
BLAST of DY262716 vs. ExPASy Swiss-Prot
Match: RME6_CAEBR (Receptor-mediated endocytosis protein 6 OS=Caenorhabditis briggsae GN=rme-6 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.485e-13
Identity = 56/194 (28.87%), Postives = 85/194 (43.81%), Query Frame = 1
Query:  259 VQSFLANMEAAFRAHPLWAGCSEEELDSAGEGLEKYVMTKLFTRVFASIPD-DVKTDEQLSEKIALVQQFVRP--ENLDIKASFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRYRRQSRLVGEAAYFFTNMLSAESFISNI 831
            +Q+ L  +      +  W   +E  +  A   +E++VM  ++   F    + D K D+ L   I      V P  E L I      E  W  AQ EL  ++ Y   ++KL C++ CC V              +   AD+  PVL++V IKANP  L SNL +I+ +       G  AY++ N  SA  +I  I
Sbjct:  913 LQNLLTYLRERLMQNYDWNFATESMIARAMTTMERFVMFAVYEIAFWPNREMDQKKDKLLQSVIGKASSSVTPVHEALKIPEHLLGEAPWPSAQAELSMLDNYVTAQEKLNCLVRCCDVINNLVALSSKNAVAS---ADDLTPVLVFVIIKANPRSLLSNLQFIETFAGDQIESGRDAYYWVNFKSAVEYIKTI 1103          
The following BLAST results are available for this feature:
BLAST of DY262716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RME6_DROPS7.466e-1835.09Receptor-mediated endocytosis protein 6 homolog OS... [more]
RME6_CAEEL1.721e-1430.51Receptor-mediated endocytosis protein 6 OS=Caenorh... [more]
RME6_CAEBR2.485e-1328.87Receptor-mediated endocytosis protein 6 OS=Caenorh... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100DA02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262716 ID=DY262716; Name=DY262716; organism=Citrus clementina; type=EST; length=1218bp
AATCAATCATCATATCTGTACGTACACAACCGCAAGACATCCGAGTCTCA
GTCTCCGCTTCAGACTTATTCCCGTAATACGCAAGCTTAGATATCTGGCG
GTGGACGTTTAATGGAGAACGCCGACGTGTTCTTGGGATTGCACGACTTT
CTAGAGCGCATGCGTCAACCCTCCGCCGCAGATTTCGTCAAATCCATCAA
GAGTTTCATTGTTTCATTTTCAAACAATGCTCCTGATCCAGAAAGGGACA
GTGCTGCAGTGCAGTCATTCCTTGCCAATATGGAAGCAGCTTTCAGGGCG
CATCCTCTTTGGGCTGGTTGTTCAGAGGAGGAGCTGGACAGTGCTGGTGA
AGGACTGGAGAAGTATGTGATGACAAAGTTATTTACTCGTGTATTTGCTT
CAATTCCCGATGATGTTAAAACTGATGAACAGCTTTCAGAGAAGATAGCT
TTGGTTCAGCAATTTGTTCGTCCTGAAAATTTGGATATCAAGGCATCCTT
TCAGAATGAAACATCATGGCTGCTTGCACAGAAAGAGCTACAAAAGATAA
ATATGTACAAGGCTCCAAGAGACAAGCTTGTGTGTATTCTCAACTGCTGC
AAGGTCATCAATAATTTACTGCTTAATGCTTCTATAGCTTTAAATGAGAA
CCCCCCTGGAGCTGATGAATTTCTTCCCGTCCTAATTTACGTTACTATCA
AGGCGAATCCTCCACAACTGCACTCAAATCTATTGTATATACAAAGATAC
AGGCGTCAATCCCGATTAGTTGGAGAAGCAGCCTATTTTTTCACTAACAT
GCTCTCTGCAGAGTCTTTCATCTCTAACATTGATGCACAAGCCCTGTCAA
TGGAGGAATCTGAGTTTGAAAGAATATGGAATCTGCTCAAGCCCTTCTAT
CTGGTCTTTCAGCTGATATGGATGGTCTGTCTAATCTAAATGATGAAAGT
GAAAGTCCAATTTCTGTAAAACAACTTTAACAATCGAAACATCCAGGAGT
GAATTCTTCCAAAGAAAAAAACAATTTTACACTGGTCCAAATTTTCTTAA
TTAAATTTTTTAAAGAAAGGAAAAATTTGCCAAAAAATCAGAACCCAAAA
CAAAAATTTCTTTCCCCTCCGGAATTGTAATAAAAGGGGGCCACTTTTCC
TTTTTTAAGAAAAAAAAAGCGCCCCCCAACTTCTTTTGGAAAATCTATCT
TTTTTTTTTGGCCCACGT
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