DY262742

Overview
NameDY262742
Unique NameDY262742
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length776
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 5.195e-76
Identity = 134/177 (75.71%), Postives = 148/177 (83.62%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTF 533
            +EQEYTLLQKDVKWPL                   ADKAWGRDIVD+HYKACLY+GINISGINGEVMPGQWEFQVGP+VGISA D+LW AR+I+ERITE AGVVLSFDPKPI+GDWNGAG H NYSTKSMR +GGFEVIKKAIEKL LRH EHI+AYGEGN RR+TG+HETA++ TF
Sbjct:  129 LEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDAHYKACLYSGINISGINGEVMPGQWEFQVGPSVGISAADELWCARFIMERITEKAGVVLSFDPKPIEGDWNGAGCHTNYSTKSMRKEGGFEVIKKAIEKLKLRHKEHISAYGEGNERRLTGRHETADMNTF 305          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA_NICPL (Glutamine synthetase OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 6.785e-76
Identity = 137/178 (76.97%), Postives = 148/178 (83.15%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTFQ 536
            IEQEYTLLQ+D+ WPL                   ADKA+GRDIVDSHYKA LYAGINISGINGEVMPGQWEFQVGP+VGISAGD++WVARYILERI EIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR DGG+EVI KAIEKLGL+H EHIAAYGEGN RR+TGKHETA I TF+
Sbjct:  128 IEQEYTLLQRDINWPLGWPIGGFPGPQGPYYCGTGADKAFGRDIVDSHYKAYLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEVWVARYILERIAEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMREDGGYEVILKAIEKLGLKHKEHIAAYGEGNERRLTGKHETANISTFK 305          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA5_MAIZE (Glutamine synthetase root isozyme 5 OS=Zea mays GN=GS1-5 PE=2 SV=2)

HSP 1 Score: 283.493 bits (724), Expect = 8.862e-76
Identity = 134/178 (75.28%), Postives = 150/178 (84.27%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTFQ 536
            IEQEYTLLQKD+ WPL                   ADKA+GRD+VD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VGISAGD++WVARYILERITE+AG+VLS DPKPI+GDWNGAGAH NYSTKSMR  GG+EVIK+AIEKLG RH EHIAAYGEGN RR+TG+HETA+I TF+
Sbjct:  128 IEQEYTLLQKDLSWPLGWPVGGYPGPQGPYYCAAGADKAFGRDVVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWVARYILERITEMAGIVLSLDPKPIKGDWNGAGAHTNYSTKSMREAGGYEVIKEAIEKLGRRHREHIAAYGEGNERRLTGRHETADINTFK 305          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA1_PEA (Glutamine synthetase nodule isozyme OS=Pisum sativum GN=GS1 PE=2 SV=2)

HSP 1 Score: 283.108 bits (723), Expect = 1.157e-75
Identity = 133/177 (75.14%), Postives = 150/177 (84.75%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTF 533
            IEQEYTLLQKD+ WPL                   ADKA+GRD+V++HYKACL+AGINISGINGEVMPGQWEFQVGP+VGISAGD++WVARYILERITE+AGVVL+FDPKPI+GDWNGAGAH NYSTKSMR DGG+E+IKKAIEKLG R  EHI+AYGEGN RR+TGKHETA+I TF
Sbjct:  127 IEQEYTLLQKDINWPLGWPAGGYPGPQGPYYCSVGADKAFGRDVVEAHYKACLFAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWVARYILERITEVAGVVLTFDPKPIKGDWNGAGAHTNYSTKSMREDGGYEIIKKAIEKLGKRLPEHISAYGEGNERRLTGKHETADINTF 303          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA1_MAIZE (Glutamine synthetase root isozyme 1 OS=Zea mays GN=GLN6 PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.157e-75
Identity = 134/178 (75.28%), Postives = 149/178 (83.71%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTFQ 536
            IEQEYTLLQKDV WPL                   ADKA+GRD+VD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VGISAGD++WVARYILERITE+AG+VLS DPKPI+GDWNGAGAH NYSTKSMR  GG+EVIK AI+KLG RH EHIAAYGEGN RR+TG+HETA+I TF+
Sbjct:  128 IEQEYTLLQKDVSWPLGWPVGGYPGPQGPYYCAAGADKAFGRDVVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEIWVARYILERITEMAGIVLSLDPKPIKGDWNGAGAHTNYSTKSMREAGGYEVIKAAIDKLGKRHKEHIAAYGEGNERRLTGRHETADINTFK 305          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLN12_ARATH (Glutamine synthetase cytosolic isozyme 1-2 OS=Arabidopsis thaliana GN=GLN1-2 PE=1 SV=2)

HSP 1 Score: 281.952 bits (720), Expect = 2.578e-75
Identity = 134/177 (75.71%), Postives = 148/177 (83.62%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTF 533
            IEQEYTLLQKDV WPL                   ADK++GRDIVD+HYKA LYAGINISGINGEVMPGQWEFQVGP+VGISA D++W+ARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR +GG+E+IKKAIEKLGLRH EHI+AYGEGN RR+TG HETA+I TF
Sbjct:  128 IEQEYTLLQKDVNWPLGWPIGGFPGPQGPYYCSIGADKSFGRDIVDAHYKASLYAGINISGINGEVMPGQWEFQVGPSVGISAADEIWIARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMREEGGYEIIKKAIEKLGLRHKEHISAYGEGNERRLTGHHETADINTF 304          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA4_MAIZE (Glutamine synthetase root isozyme 4 OS=Zea mays GN=GLN5 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 6.515e-75
Identity = 133/177 (75.14%), Postives = 148/177 (83.62%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTF 533
            IEQEYTLLQKD  WPL                   A+K++GRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VGIS+GDQ+WVARYILERITEIAGVV++FDPKPI GDWNGAGAH NYST+SMR +GG+EVIK AIEKL LRH EHIAAYGEGN RR+TG+HETA+I TF
Sbjct:  128 IEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINTF 304          

HSP 2 Score: 23.483 bits (49), Expect = 6.515e-75
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  541 GVANGGASTGVGQNQ 585
            GVAN GAS  VGQ +
Sbjct:  307 GVANRGASVAVGQTE 321          

HSP 3 Score: 21.9422 bits (45), Expect = 6.515e-75
Identity = 8/14 (57.14%), Postives = 9/14 (64.29%), Query Frame = 2
Query:  608 FEEGEPGFNRDPYV 649
            FE+  P  N DPYV
Sbjct:  328 FEDRRPASNMDPYV 341          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLN12_ORYSJ (Glutamine synthetase cytosolic isozyme 1-2 OS=Oryza sativa subsp. japonica GN=GLN1-2 PE=1 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.280e-74
Identity = 132/178 (74.16%), Postives = 148/178 (83.15%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTFQ 536
            IEQEYTLLQKDV WPL                   A+KA+GRDIVD+HYKAC+YAGINISGINGEVMPGQWEFQVGP+VGI+A DQ+WVARYILER+TE+AGVVLS DPKPI GDWNGAGAH N+STKSMR  GG+EVIKKAI+KL LRH EHIAAYGEGN RR+TG+HETA+I TF+
Sbjct:  128 IEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCAAGAEKAFGRDIVDAHYKACIYAGINISGINGEVMPGQWEFQVGPSVGIAAADQVWVARYILERVTEVAGVVLSLDPKPIPGDWNGAGAHTNFSTKSMREPGGYEVIKKAIDKLALRHKEHIAAYGEGNERRLTGRHETADINTFK 305          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA3_HORVU (Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.183e-74
Identity = 132/176 (75.00%), Postives = 146/176 (82.95%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKT 530
            IEQEYTLLQKD+ WPL                   ADK++GRDIVDSHYKACL+ G+NISGINGEVMPGQWEFQVGP VGISAGDQ+WVARYILERITEIAGVV++FDPKPI GDWNGAGAH NYST+SMRNDGGF+VI  A+EKL L+H EHIAAYGEGN RR+TGKHETA+I T
Sbjct:  128 IEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCGIGADKSFGRDIVDSHYKACLFGGVNISGINGEVMPGQWEFQVGPTVGISAGDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTESMRNDGGFKVIVDAVEKLKLKHKEHIAAYGEGNERRLTGKHETADINT 303          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA3_MAIZE (Glutamine synthetase root isozyme 3 OS=Zea mays GN=GLN4 PE=1 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 8.294e-74
Identity = 132/177 (74.58%), Postives = 147/177 (83.05%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTF 533
            IEQEYTLLQKD  WPL                   A+K++GRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VGIS+GDQ+WVARYILERITEIAGVV++FDPKPI GDWNGAGAH NYST+SMR +GG+EVIK AIEKL LRH EHIAAYGEGN  R+TG+HETA+I TF
Sbjct:  128 IEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHREHIAAYGEGNDGRLTGRHETADINTF 304          
The following BLAST results are available for this feature:
BLAST of DY262742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA_PINSY5.195e-7675.71Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLNA_NICPL6.785e-7676.97Glutamine synthetase OS=Nicotiana plumbaginifolia ... [more]
GLNA5_MAIZE8.862e-7675.28Glutamine synthetase root isozyme 5 OS=Zea mays GN... [more]
GLNA1_PEA1.157e-7575.14Glutamine synthetase nodule isozyme OS=Pisum sativ... [more]
GLNA1_MAIZE1.157e-7575.28Glutamine synthetase root isozyme 1 OS=Zea mays GN... [more]
GLN12_ARATH2.578e-7575.71Glutamine synthetase cytosolic isozyme 1-2 OS=Arab... [more]
GLNA4_MAIZE6.515e-7575.14Glutamine synthetase root isozyme 4 OS=Zea mays GN... [more]
GLN12_ORYSJ1.280e-7474.16Glutamine synthetase cytosolic isozyme 1-2 OS=Oryz... [more]
GLNA3_HORVU2.183e-7475.00Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1[more]
GLNA3_MAIZE8.294e-7474.58Glutamine synthetase root isozyme 3 OS=Zea mays GN... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100DC09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262742 ID=DY262742; Name=DY262742; organism=Citrus clementina; type=EST; length=776bp
GTATTGAGCAGGAATACACCTTACTGCAGAAGGATGTTAAATGGCCTCTT
GGCTGGCCCATCGGTGGTTATCCTGGGCCTCAGGGACCATACTACTGTGG
TGTTGGTGCTGACAAAGCTTGGGGGCGTGACATTGTGGACTCCCATTACA
AGGCCTGTCTATATGCAGGAATCAACATCAGTGGCATCAATGGAGAAGTC
ATGCCGGGGCAGTGGGAGTTCCAAGTTGGTCCCGCTGTTGGAATTTCTGC
TGGAGATCAGTTGTGGGTTGCCCGCTATATTTTAGAGAGGATTACAGAGA
TTGCTGGAGTTGTGCTTTCTTTCGATCCCAAGCCAATTCAGGGTGACTGG
AATGGAGCTGGTGCTCACGCAAATTACAGCACCAAGTCGATGAGGAACGA
TGGAGGCTTTGAGGTTATTAAGAAAGCAATTGAGAAACTTGGACTGAGGC
ACAGTGAGCACATTGCCGCATATGGTGAAGGCAATGGACGCCGAATCACT
GGGAAACATGAAACAGCTGAAATCAAAACTTTCCAAGGGGGGGGTTGCTA
ACGGGGGGGCATCAACCGGGGTGGGACAAAACCAAAAAAAAAAAAGGAAA
GGGTACCTTTGAGGAAGGGGAACCGGGTTTCAACCGGGATCCCTATGTTG
GCCCCCCCCCGAAATGGCAAAACCCCCTTTTCGGGGAGAAACCTGAAGGG
GCCCCTCACCACACCCTTTAAAAAATTTTTTTTTGGTGCTGGGGGGCTTT
TTATTACGGGGATCCCCAGAATCCCC
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