DY262742

Overview
NameDY262742
Unique NameDY262742
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length776
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNAC_MAIZE (Glutamine synthetase, chloroplastic OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 7.266e-70
Identity = 126/177 (71.19%), Postives = 139/177 (78.53%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTF 533
            IEQEYTLLQKDV WPL                   ADK++GRDI D+HYKACLYAGINISG NGEVMPGQWE+QVGP+VGI AGD +W++RYILERITE AGVVL+ DPKPIQGDWNGAG H NYSTK+MR DGGFE IK+AI  L LRH  HI+AYGEGN RR+TGKHETA I TF
Sbjct:  179 IEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCAVGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWISRYILERITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTKTMREDGGFEEIKRAILNLSLRHDLHISAYGEGNERRLTGKHETASIGTF 355          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA2_ORYSJ (Glutamine synthetase, chloroplastic OS=Oryza sativa subsp. japonica GN=GLN2 PE=1 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.761e-69
Identity = 125/177 (70.62%), Postives = 138/177 (77.97%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTF 533
            IEQEYTLLQ+DV WPL                   +DK++GRDI D+HYKACLYAGINISG NGEVMPGQWE+QVGP+VGI AGD +W++RYILERITE AGVVL+ DPKPIQGDWNGAG H NYSTKSMR DGGFEVIKKAI  L LRH  HI+AYGEGN RR+TG HETA I  F
Sbjct:  184 IEQEYTLLQRDVNWPLGWPVGGYPGPQGPYYCAVGSDKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWISRYILERITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHDLHISAYGEGNERRLTGLHETASIDNF 360          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA2_PEA (Glutamine synthetase leaf isozyme, chloroplastic OS=Pisum sativum GN=GS2 PE=2 SV=2)

HSP 1 Score: 260.766 bits (665), Expect = 6.151e-69
Identity = 125/177 (70.62%), Postives = 137/177 (77.40%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTF 533
            IEQEYTLLQ +VKWPL                   ADK++GRDI D+HYKAC+YAGINISG NGEVMPGQWE+QVGP+VGI AGD +W +RYILERITE AGVVL+ DPKPI+GDWNGAG H NYSTKSMR DGGFEVIKKAI  L LRH  HI AYGEGN RR+TGKHETA I  F
Sbjct:  186 IEQEYTLLQTNVKWPLGWPVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACIYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWASRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHKIHIEAYGEGNERRLTGKHETASINDF 362          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA2_HORVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 3.375e-67
Identity = 122/177 (68.93%), Postives = 135/177 (76.27%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTF 533
            IEQEYTL+Q+DV WPL                   +DK++GRDI D+HYKACLYAGI ISG NGEVMPGQWE+QVGP+VGI AGD +W +RYILERITE AGVVL+ DPKPIQGDWNGAG H NYST SMR DGGF+VIKKAI  L LRH  HIAAYGEGN RR+TG HETA I  F
Sbjct:  190 IEQEYTLMQRDVNWPLGWPVGGYPGPQGPYYCAVGSDKSFGRDISDAHYKACLYAGIEISGTNGEVMPGQWEYQVGPSVGIDAGDHIWASRYILERITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTLSMREDGGFDVIKKAILNLSLRHDLHIAAYGEGNERRLTGLHETASISDF 366          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA_AMAMU (Glutamine synthetase OS=Amanita muscaria GN=GLN1 PE=2 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 6.180e-53
Identity = 101/177 (57.06%), Postives = 118/177 (66.67%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTF 533
            IEQEYTL   D   P                      K + RD++++HY+ACLYAG+NISGIN EVMP QWEFQVGP  GIS GD LW+ARY+L R+ E  GV +SF PKP+QGDWNGAGAH NYST +MR  GG + I+ AIEKL  RH EHIA YGE N  R+TG+HET  I TF
Sbjct:  128 IEQEYTLFDADGS-PYGWPKGGFPGPQGPYYCGAGTGKVFARDLIEAHYRACLYAGVNISGINAEVMPSQWEFQVGPCEGISMGDHLWMARYLLIRVAEQWGVKVSFHPKPLQGDWNGAGAHTNYSTLAMREPGGMKYIEAAIEKLAKRHDEHIAVYGEDNEMRLTGRHETGHIGTF 303          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA_HEBCY (Glutamine synthetase OS=Hebeloma cylindrosporum GN=GLN1 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.377e-52
Identity = 100/177 (56.50%), Postives = 118/177 (66.67%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTF 533
            +EQEYTL   D   P                      K + RD++++HY+ACLY+GINISGIN EVMP QWEFQVGP  GIS GD LW+ARY+L RI E   V +SF PKP+QGDWNGAG H NYSTK+MR  GG +VI++AIEKL  RH EHIA YGE N  R+TG+HET  I  F
Sbjct:  128 LEQEYTLFDADGS-PYGWPKGGFPGPQGPYYCGAGTGKVFARDLIEAHYRACLYSGINISGINAEVMPSQWEFQVGPCEGISMGDHLWMARYLLVRIAEQWAVKVSFHPKPLQGDWNGAGCHTNYSTKAMREPGGMKVIEEAIEKLSKRHDEHIAVYGEDNDLRLTGRHETGHIGAF 303          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA_AGABI (Glutamine synthetase OS=Agaricus bisporus GN=glnA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.165e-51
Identity = 98/177 (55.37%), Postives = 118/177 (66.67%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTF 533
            +EQEYTL   D + P                      K + RD++++HY+ACLYAGINISGIN EVMP QWEFQVGP  GIS GD LW+ARY+L RI E  GV +SF PKP++G+WNGAG H N+STK+MR  GG + I+ AIEKL  RH EHIA YGE N  R+TG+HET  I  F
Sbjct:  128 LEQEYTLFDADDQ-PYGWPKGGFPGPQGPYYCGAGTGKVFARDLIEAHYRACLYAGINISGINAEVMPSQWEFQVGPCEGISMGDHLWMARYLLVRIAEQWGVKVSFHPKPLKGEWNGAGCHTNFSTKAMREAGGMKFIEDAIEKLAKRHDEHIAVYGEDNDLRLTGRHETGHISNF 303          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA_SUIBO (Glutamine synthetase OS=Suillus bovinus GN=GLNA PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.522e-51
Identity = 98/177 (55.37%), Postives = 116/177 (65.54%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTF 533
            +EQEYTL   D   P                      K + RD++++HY+ACLYAG+NISGIN EVMP QWEFQVGP  GIS GD LW+ARY+L RI E  G+ +SF PKP+ GDWNGAG H NYSTK MR  GG + I +AIEKL  RH+EHIA YGE N  R+TG+HET  I  F
Sbjct:  128 LEQEYTLFDADGT-PFGWPKGGFPGPQGPYYCGAGTGKVFARDLIEAHYRACLYAGVNISGINAEVMPSQWEFQVGPCEGISMGDHLWMARYLLVRIAEQWGIKVSFHPKPLAGDWNGAGCHTNYSTKVMREPGGMKYIDEAIEKLSKRHAEHIAVYGEDNDLRLTGRHETGHIGDF 303          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA_YARLI (Glutamine synthetase OS=Yarrowia lipolytica GN=GLN1 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.391e-51
Identity = 97/180 (53.89%), Postives = 119/180 (66.11%), Query Frame = 3
Query:    3 IEQEYTLLQKD---VKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTF 533
            IEQEYT+  +    V WP                      K + RD+V++HY+ACLY+GINISGIN EVMP QWE+QVGP  GIS  D+LW++RY+L R+ E  G+ +SF PKP+QGDWNGAG H N STKSMR  GG + I+ AIEKL  RH EHIA YGE N  R+TG+HET  I +F
Sbjct:  121 IEQEYTMFDESDNPVGWP----KGGFPAPQGPYYCGVGTGKVFARDVVEAHYRACLYSGINISGINAEVMPSQWEYQVGPCEGISMADELWMSRYLLHRVAEEFGIKISFHPKPLQGDWNGAGCHTNVSTKSMREPGGMKHIEAAIEKLAARHKEHIAVYGEDNDMRLTGRHETGSIGSF 296          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA_CHICK (Glutamine synthetase OS=Gallus gallus GN=GLUL PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.391e-51
Identity = 101/181 (55.80%), Postives = 120/181 (66.30%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNGRRITGKHETAEIKTF 533
            +EQEYTLL  D   P                    ADKA+GRDIV++HY+ACLYAG+ I G N EVMP QWEFQVGP  GI  GD LW+AR+IL R+ E  GV++SFDPKPI G+WNGAG H N+STK+MR DGG + I++AIEKL  RH  HI AY    G  N RR+TG HET+ I  F
Sbjct:  133 MEQEYTLLGTDGH-PFGWPSNCFPGPQGPYYCGVGADKAYGRDIVEAHYRACLYAGVKIGGTNAEVMPAQWEFQVGPCEGIEMGDHLWIARFILHRVCEDFGVIVSFDPKPIPGNWNGAGCHTNFSTKNMREDGGLKHIEEAIEKLSKRHQYHIRAYDPKGGLDNARRLTGFHETSSIHEF 312          
The following BLAST results are available for this feature:
BLAST of DY262742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNAC_MAIZE7.266e-7071.19Glutamine synthetase, chloroplastic OS=Zea mays GN... [more]
GLNA2_ORYSJ2.761e-6970.62Glutamine synthetase, chloroplastic OS=Oryza sativ... [more]
GLNA2_PEA6.151e-6970.62Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_HORVU3.375e-6768.93Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA_AMAMU6.180e-5357.06Glutamine synthetase OS=Amanita muscaria GN=GLN1 P... [more]
GLNA_HEBCY1.377e-5256.50Glutamine synthetase OS=Hebeloma cylindrosporum GN... [more]
GLNA_AGABI1.165e-5155.37Glutamine synthetase OS=Agaricus bisporus GN=glnA ... [more]
GLNA_SUIBO1.522e-5155.37Glutamine synthetase OS=Suillus bovinus GN=GLNA PE... [more]
GLNA_YARLI3.391e-5153.89Glutamine synthetase OS=Yarrowia lipolytica GN=GLN... [more]
GLNA_CHICK3.391e-5155.80Glutamine synthetase OS=Gallus gallus GN=GLUL PE=2... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100DC09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262742 ID=DY262742; Name=DY262742; organism=Citrus clementina; type=EST; length=776bp
GTATTGAGCAGGAATACACCTTACTGCAGAAGGATGTTAAATGGCCTCTT
GGCTGGCCCATCGGTGGTTATCCTGGGCCTCAGGGACCATACTACTGTGG
TGTTGGTGCTGACAAAGCTTGGGGGCGTGACATTGTGGACTCCCATTACA
AGGCCTGTCTATATGCAGGAATCAACATCAGTGGCATCAATGGAGAAGTC
ATGCCGGGGCAGTGGGAGTTCCAAGTTGGTCCCGCTGTTGGAATTTCTGC
TGGAGATCAGTTGTGGGTTGCCCGCTATATTTTAGAGAGGATTACAGAGA
TTGCTGGAGTTGTGCTTTCTTTCGATCCCAAGCCAATTCAGGGTGACTGG
AATGGAGCTGGTGCTCACGCAAATTACAGCACCAAGTCGATGAGGAACGA
TGGAGGCTTTGAGGTTATTAAGAAAGCAATTGAGAAACTTGGACTGAGGC
ACAGTGAGCACATTGCCGCATATGGTGAAGGCAATGGACGCCGAATCACT
GGGAAACATGAAACAGCTGAAATCAAAACTTTCCAAGGGGGGGGTTGCTA
ACGGGGGGGCATCAACCGGGGTGGGACAAAACCAAAAAAAAAAAAGGAAA
GGGTACCTTTGAGGAAGGGGAACCGGGTTTCAACCGGGATCCCTATGTTG
GCCCCCCCCCGAAATGGCAAAACCCCCTTTTCGGGGAGAAACCTGAAGGG
GCCCCTCACCACACCCTTTAAAAAATTTTTTTTTGGTGCTGGGGGGCTTT
TTATTACGGGGATCCCCAGAATCCCC
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