DY262742

Overview
NameDY262742
Unique NameDY262742
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length776
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA2_CHLRE (Glutamine synthetase, chloroplastic OS=Chlamydomonas reinhardtii GN=GLN2 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.399e-43
Identity = 84/178 (47.19%), Postives = 117/178 (65.73%), Query Frame = 3
Query:    6 EQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQ-GDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTFQ 536
            EQEYT+L K                         A+ A+GR + ++H +AC+ AG+ ISGIN EVMPGQWE+Q+GP   ++ GD++ ++R++L R+ E  G+V +F+PKP++ GDWNG GAH N+STK MR  GG +VI++A+EKL   H EHI  YG GN  R+TGKHET +I TF+
Sbjct:  154 EQEYTMLAKTSGHIYGWPAGGFPAPQGPFYCGVGAESAFGRPLAEAHMEACMKAGLVISGINAEVMPGQWEYQIGPVGPLALGDEVMLSRWLLHRLGEDFGIVSTFNPKPVRTGDWNGTGAHTNFSTKGMRVPGGMKVIEEAVEKLSKTHIEHITQYGIGNEARLTGKHETCDINTFK 331          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA_CAEEL (Probable glutamine synthetase OS=Caenorhabditis elegans GN=gln-2 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.436e-41
Identity = 86/183 (46.99%), Postives = 112/183 (61.20%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKP--IQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAY----GEGNGRRITGKHETAEIKTF 533
            +EQEY ++ +D + PL                   AD+A+GR++V++HY+ACL+AG+NI G N EV PGQWEFQ+G   GI  GDQLW++RYIL R+ E  GV +S DPKP    GDWNGAG H N+ST  MR  GG   I+ A+  L   H E +  Y    GE N RR+TG+HET+    F
Sbjct:  137 MEQEYLIVDRD-EHPLGWPKHGFPDPQGKYYCSVGADRAFGREVVETHYRACLHAGLNIFGTNAEVTPGQWEFQIGTCEGIDMGDQLWMSRYILHRVAEQFGVCVSLDPKPKVTMGDWNGAGCHTNFSTAEMRAPGGIAAIEAAMTGLKRTHLEAMKVYDPHGGEDNLRRLTGRHETSSADKF 318          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA2_STRVR (Glutamine synthetase 2 OS=Streptomyces viridochromogenes GN=glnII PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.578e-38
Identity = 83/174 (47.70%), Postives = 104/174 (59.77%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKL--GLRHSEHIAAYGEGNGRRITGKHETA 518
            IEQEYT  Q    +PL                   AD+ +GRD+V++H   CL AG+ ISGIN EVMPGQWEFQVGP   +   D LWVAR++L R  E   V  + DPKP++GDWNGAGAH N+STK+MR    ++ I  A E L  G +  +H+  YG G   R+TG HETA
Sbjct:  112 IEQEYTFFQDG--YPLGFPKGGFPAPQGGYYCGVGADEIFGRDVVEAHLDNCLKAGLAISGINAEVMPGQWEFQVGPVSPLEVSDHLWVARWLLYRTAEDFDVAATLDPKPVKGDWNGAGAHTNFSTKAMRE--SYDAIITAAESLGEGSKPLDHVKNYGAGIDDRLTGLHETA 281          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA2_STRHY (Glutamine synthetase 2 OS=Streptomyces hygroscopicus GN=glnB PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.529e-35
Identity = 83/175 (47.43%), Postives = 103/175 (58.86%), Query Frame = 3
Query:    3 IEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXX-ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGL--RHSEHIAAYGEGNGRRITGKHETA 518
            IEQEYT L+ D   PL                    AD  +GR+IV+ H   CL AG+ +SGIN EVMPGQWEFQVG    +   D +WVAR++L R+ E  GV  S D KP +GDWNGAGAH N+ST++MR   G++ I  A E LG   +  EH+  YG G   R+TG HETA
Sbjct:  108 IEQEYTFLKGDR--PLGFPEGGGYPAPQADYYCGVGADAIFGREIVEKHLDLCLAAGLGLSGINAEVMPGQWEFQVGALPPLEVSDHMWVARWLLHRVAEEFGVTASLDAKPAKGDWNGAGAHTNFSTRAMRE--GYDPIITACEALGQDDKPLEHVRQYGTGIEDRLTGAHETA 278          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA2_FRAAL (Glutamine synthetase 2 OS=Frankia alni GN=glnII PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.208e-34
Identity = 80/174 (45.98%), Postives = 99/174 (56.90%), Query Frame = 3
Query:    3 IEQEYTLLQ--KDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETA 518
            IEQEYT  +  +   WP                      K  GR IV+ H +ACL AG+ I G N EVM GQWEFQ+G     + GDQ+W+ R++L RI E  GV +SF  KPI GDWNGAGAH N+STK      G++ I    E LG R +EH+  YG+G   R+TGKHETA
Sbjct:  107 IEQEYTFFKDGRPYGWP----EVGYPAPQGPYYCGVGGSKMPGRQIVERHTQACLDAGLAIEGTNAEVMMGQWEFQIGVLPAPAIGDQIWLGRWLLHRIAEDYGVEVSFAAKPIPGDWNGAGAHTNFSTKQTME--GWDAIVTCCEALGTRVTEHVTHYGKGIEDRLTGKHETA 274          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA2_RHILP (Glutamine synthetase 2 OS=Rhizobium leguminosarum bv. phaseoli GN=glnII PE=1 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 9.600e-30
Identity = 64/137 (46.72%), Postives = 84/137 (61.31%), Query Frame = 3
Query:  126 RDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPI-QGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTF 533
            R+IV+ H   CL AGIN  GIN EV  GQWEFQ+       A DQ+W+ARY+L+R+TE  G+ + +  KP+   DWNG+G H N+STK +R  GG E  +  +        +HIA YG  N +R+TGKHETA    F
Sbjct:  146 REIVEEHLDLCLAAGINHEGINAEVAKGQWEFQIFGKGSKKAADQIWMARYLLQRLTEKYGIDIEYHCKPLGDTDWNGSGMHCNFSTKYLREVGGKEYFEALMASSDKNLMDHIAVYGPDNDKRLTGKHETAPWNKF 282          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA2_BRAJA (Glutamine synthetase 2 OS=Bradyrhizobium japonicum GN=glnII PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.765e-29
Identity = 64/137 (46.72%), Postives = 83/137 (60.58%), Query Frame = 3
Query:  126 RDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPI-QGDWNGAGAHANYSTKSMRNDGGFEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETAEIKTF 533
            R IV+ H   CL AGIN  GIN EV  GQWEFQ+       A D++W+ARY++ R+TE  G+ + F  KP+   DWNG+G HAN+ST+ MR  GG E  +  +        +HIA YG  N +R+TGKHETA    F
Sbjct:  149 RKIVEEHLDLCLAAGINHEGINAEVAKGQWEFQIFGKGSKKAADEMWMARYLMLRLTEKYGIDIEFHCKPLGDTDWNGSGMHANFSTEYMRTVGGKEYFEALMAAFDKNLMDHIAVYGPDNDKRLTGKHETAPWNKF 285          
BLAST of DY262742 vs. ExPASy Swiss-Prot
Match: GLNA2_RHIME (Glutamine synthetase 2 OS=Rhizobium meliloti GN=glnII PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.891e-26
Identity = 66/135 (48.89%), Postives = 81/135 (60.00%), Query Frame = 3
Query:  126 RDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPI-QGDWNGAGAHANYSTKSMRNDGG---FEVIKKAIEKLGLRHSEHIAAYGEGNGRRITGKHETA 518
            R IV+ H   CL AGIN  GIN EV  GQWEFQ+       A D++ VARY+L R+TE  G+ + F  KP+   DWNG+G HAN+ST  +R  GG   FE +  A EK      +HI  YG  N  R+TGKHETA
Sbjct:  149 RQIVEEHLDICLAAGINHEGINAEVAKGQWEFQIFGKGSKKAADEVCVARYLLVRLTEKYGIDVEFHCKPLGDTDWNGSGMHANFSTAYLREVGGQDYFEALMAAFEK---NLHDHINVYGPDNHLRLTGKHETA 280          
The following BLAST results are available for this feature:
BLAST of DY262742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA2_CHLRE3.399e-4347.19Glutamine synthetase, chloroplastic OS=Chlamydomon... [more]
GLNA_CAEEL2.436e-4146.99Probable glutamine synthetase OS=Caenorhabditis el... [more]
GLNA2_STRVR9.578e-3847.70Glutamine synthetase 2 OS=Streptomyces viridochrom... [more]
GLNA2_STRHY1.529e-3547.43Glutamine synthetase 2 OS=Streptomyces hygroscopic... [more]
GLNA2_FRAAL2.208e-3445.98Glutamine synthetase 2 OS=Frankia alni GN=glnII PE... [more]
GLNA2_RHILP9.600e-3046.72Glutamine synthetase 2 OS=Rhizobium leguminosarum ... [more]
GLNA2_BRAJA4.765e-2946.72Glutamine synthetase 2 OS=Bradyrhizobium japonicum... [more]
GLNA2_RHIME2.891e-2648.89Glutamine synthetase 2 OS=Rhizobium meliloti GN=gl... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100DC09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262742 ID=DY262742; Name=DY262742; organism=Citrus clementina; type=EST; length=776bp
GTATTGAGCAGGAATACACCTTACTGCAGAAGGATGTTAAATGGCCTCTT
GGCTGGCCCATCGGTGGTTATCCTGGGCCTCAGGGACCATACTACTGTGG
TGTTGGTGCTGACAAAGCTTGGGGGCGTGACATTGTGGACTCCCATTACA
AGGCCTGTCTATATGCAGGAATCAACATCAGTGGCATCAATGGAGAAGTC
ATGCCGGGGCAGTGGGAGTTCCAAGTTGGTCCCGCTGTTGGAATTTCTGC
TGGAGATCAGTTGTGGGTTGCCCGCTATATTTTAGAGAGGATTACAGAGA
TTGCTGGAGTTGTGCTTTCTTTCGATCCCAAGCCAATTCAGGGTGACTGG
AATGGAGCTGGTGCTCACGCAAATTACAGCACCAAGTCGATGAGGAACGA
TGGAGGCTTTGAGGTTATTAAGAAAGCAATTGAGAAACTTGGACTGAGGC
ACAGTGAGCACATTGCCGCATATGGTGAAGGCAATGGACGCCGAATCACT
GGGAAACATGAAACAGCTGAAATCAAAACTTTCCAAGGGGGGGGTTGCTA
ACGGGGGGGCATCAACCGGGGTGGGACAAAACCAAAAAAAAAAAAGGAAA
GGGTACCTTTGAGGAAGGGGAACCGGGTTTCAACCGGGATCCCTATGTTG
GCCCCCCCCCGAAATGGCAAAACCCCCTTTTCGGGGAGAAACCTGAAGGG
GCCCCTCACCACACCCTTTAAAAAATTTTTTTTTGGTGCTGGGGGGCTTT
TTATTACGGGGATCCCCAGAATCCCC
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