DY262747

Overview
NameDY262747
Unique NameDY262747
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1028
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.696e-14
Identity = 62/239 (25.94%), Postives = 102/239 (42.68%), Query Frame = 1
Query:  142 DIFSVKVWRASMAELLGTAVLVFAL--DTIVISSIQTDTKTPN---LVMSXXXXXXXXXXXXXXFPISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI 843
            D FSV   +A ++E + T + VFA     +  + + +D        + ++                ISGGH+NP V+   A+ G  +      Y +AQC+G I   L L  V   K                  P   V  GLG  + + +EI+ +F  ++     A D ++  +LG +   I IG ++G        + A   ++G  +NPAR  GPA+V G     + W++W GP +
Sbjct:   11 DSFSVSSLKAYLSEFIATLLFVFAGVGSAVAFAKLTSDGALDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSIVACLLLVFVTNGKSV----------------PTHGVSAGLGAVEGVVMEIVVTFALVYTVYATAADPKKG-SLGTIAP-IAIGFIVG------ANILAAGPFSGGSMNPARSFGPAVVSGD--LSQIWIYWVGPLV 223          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.745e-14
Identity = 68/239 (28.45%), Postives = 105/239 (43.93%), Query Frame = 1
Query:  142 DIFSVKVWRASMAELLGTAVLVFAL--DTIVISSIQTDTKTPN---LVMSXXXXXXXXXXXXXXFPISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI 843
            D FSV   +A +AE + T + VFA     I  + +  D        + ++                ISGGH+NP V+   A+ G  +      Y +AQ +G     L LK  VTN +A                P   V  GL   Q + +EII +F  ++     A D ++  +LG +   I IG ++G        + A   ++G  +NPAR  GPA+V G   + ++W++WAGP I
Sbjct:   11 DSFSVGSLKAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLK-YVTNGLA---------------VPTHGVAAGLNGLQGVVMEIIITFALVYTVYATAADPKKG-SLGTIAP-IAIGFIVG------ANILAAGPFSGGSMNPARSFGPAVVAGD--FSQNWIYWAGPLI 223          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.142e-13
Identity = 68/239 (28.45%), Postives = 105/239 (43.93%), Query Frame = 1
Query:  142 DIFSVKVWRASMAELLGTAVLVFAL--DTIVISSIQTDTKTPN---LVMSXXXXXXXXXXXXXXFPISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI 843
            D FSV   +A +AE + T + VFA     I  + +  D        + ++                ISGGH+NP V+   A+ G  +      Y +AQ +G     L LK  VTN +A                P   V  GL   Q + +EII +F  ++     A D ++  +LG +   I IG ++G        + A   ++G  +NPAR  GPA+V G   + ++W++WAGP I
Sbjct:   11 DSFSVGSLKAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLK-YVTNGLA---------------VPTHGVAAGLNGFQGVVMEIIITFALVYTVYATAADPKKG-SLGTIAP-IAIGFIVG------ANILAAGPFSGGSMNPARSFGPAVVAGD--FSQNWIYWAGPLI 223          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.142e-13
Identity = 71/249 (28.51%), Postives = 104/249 (41.77%), Query Frame = 1
Query:  166 RASMAELLGTAVLVFALDT--IVISSIQTD---TKTPNLVMSXXXXXXXXXXXXXXFPISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAFALYTKVIPSQNLH 897
            +A +AE + T + VFA     I  + +  D   T    +  S                ISGGH+NP V F A + G  +  R  +YI+AQ +G I  +  L  V  + +                   GL E G+G   AL LEI+ +F  ++     A D ++      +   I IG ++G  + V    T      GA +NPA   GPA+V     W  HWV+WAGP I      L  +V+   + H
Sbjct:   21 KAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLVFVTASSVP----------------AFGLSE-GVGVGPALVLEIVMTFGLVYTVYATAVDPKKGNI--GIIAPIAIGFIVGANILVGGAFT------GASMNPAVSFGPAVVSWS--WSNHWVYWAGPLIGGGIAGLVYEVLFINSTH 241          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 77.7962 bits (190), Expect = 1.142e-13
Identity = 72/245 (29.39%), Postives = 105/245 (42.86%), Query Frame = 1
Query:  163 WRASMAELLGTAVLVF-----ALDTIVISSIQTDTKTPNLVMSXXXXXXXXXXXXXXFPISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI-ACVAFALYTKVI 879
            WRA +AE L   + VF     AL               N+ +S                ISG H+NP V+    L+   S  RA +YI+AQCVG I  A A+ + +T+ +  N SLG   L             G+ + Q L +EII   + L   V    D R+    G   + I +   LG L+ +         Y G G+NPAR  G A++     +  HW+FW GP I + +A  +Y  ++
Sbjct:   11 WRAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIV-ASAILSGITSSLLEN-SLGRNDL-----------ARGVNSGQGLGIEII-GTLQLVLCVLATTDRRRRDLGGSAPLAIGLSVALGHLLAID--------YTGCGINPARSFGSAVLTRN--FSNHWIFWVGPFIGSALAVLIYDFIL 231          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 1.142e-13
Identity = 72/245 (29.39%), Postives = 104/245 (42.45%), Query Frame = 1
Query:  163 WRASMAELLGTAVLVF-----ALDTIVISSIQTDTKTPNLVMSXXXXXXXXXXXXXXFPISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI-ACVAFALYTKVI 879
            WRA +AE L   + VF     AL               N+ +S                ISG H+NP V+    L+   S  RA +YI+AQCVG I  A A+ + +T+ +  N SLG   L             G+ + Q L +EII   + L   V    D R+    G   + I +   LG L+ +         Y G G+NPAR  G A++     +  HW+FW GP I   +A  +Y  ++
Sbjct:   11 WRAVVAEFLAMTLFVFISIGSALGFNYPLERNQTLVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISILRAVMYIIAQCVGAIV-ATAILSGITSSLVDN-SLGRNDL-----------AHGVNSGQGLGIEII-GTLQLVLCVLATTDRRRRDLGGSAPLAIGLSVALGHLLAID--------YTGCGINPARSFGSAVLTRN--FSNHWIFWVGPFIGGALAVLIYDFIL 231          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.492e-13
Identity = 70/241 (29.05%), Postives = 101/241 (41.91%), Query Frame = 1
Query:  142 DIFSVKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSXXXXXXXXXXXXXXFPISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAFAL 864
            ++ S   WRA +AE LG+  L++ L  +  S          L  +                +SGGHINP ++ A  L    S  RA  Y+LAQ +G + GA  L  V    +     L     + V PG   +VE+ L  +      I+C    +FAS     D R   A   V   + +G + G+             + GAG+NPAR   PA++     +  HWVFWAGP +     AL
Sbjct:    3 ELRSSSFWRAILAEFLGS--LLYTLLGLGASLRWAPGPHGVLGSALAFGLAQATLVQALGHVSGGHINPAITLAFLLASQLSLPRALGYLLAQLLGALAGAGVLYGVTPAAVRGTLGLSALHPS-VGPGQGTVVELLLTAQ-----FILC----VFASFDDRHDGRPGSAALPVGFSLALGHLFGI------------PFTGAGMNPARSFAPAVITRN--FTNHWVFWAGPLLGAALAAL 217          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.948e-13
Identity = 61/239 (25.52%), Postives = 103/239 (43.10%), Query Frame = 1
Query:  142 DIFSVKVWRASMAELLGTAVLVFAL--DTIVISSIQTDTKTPN---LVMSXXXXXXXXXXXXXXFPISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI 843
            D FSV   +A ++E + T + VFA     +  + + +D        + ++                ISGGH+NP V+   A+ G  +      Y +AQC+G I   L L  V   +                  P   V  GLG  + + +EI+ +F  ++     A D ++  +LG +   I IG ++G        + A   ++G  +NPAR  GPA+V G   + + W++W GP +
Sbjct:   11 DSFSVASLKAYLSEFIATLLFVFAGVGSALAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITVITGFFYWIAQCLGSIVACLLLVFVTNGESV----------------PTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKG-SLGTIAP-IAIGFIVG------ANILAAGPFSGGSMNPARSFGPAVVSGD--FSQIWIYWVGPLV 223          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: AQP6_HUMAN (Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.948e-13
Identity = 71/255 (27.84%), Postives = 111/255 (43.53%), Query Frame = 1
Query:  133 GFEDIFSVKVW----RASMAELLGTAVLVFALDTIVISSIQTDTKTPNLV-MSXXXXXXXXXXXXXXFPISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI-ACVAFALYTKVI 879
            G+  + + ++W    RA  AE L T + VF     V S ++  T  P+++ ++              +  SG H NP V+ A  +    S  RA  Y+ AQ VG   GA  L  V+   I     +              +V   + T QA+ +E++ + + L   V+ + DSRQ    G     I I   LG L+ +         + G  +NPAR  GPA++ G   +  HWVFW GP + A +A  +Y  V+
Sbjct:   10 GWASMLACRLWKAISRALFAEFLATGLYVFFG---VGSVMRWPTALPSVLQIAITFNLVTAMAVQVTWKASGAHANPAVTLAFLVGSHISLPRAVAYVAAQLVGATVGAALLYGVMPGDIRETLGI-------------NVVRNSVSTGQAVAVELLLT-LQLVLCVFASTDSRQTS--GSPATMIGISVALGHLIGIH--------FTGCSMNPARSFGPAIIIG--KFTVHWVFWVGPLMGALLASLIYNFVL 235          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.544e-13
Identity = 67/241 (27.80%), Postives = 107/241 (44.40%), Query Frame = 1
Query:  136 FEDIFSVKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPN-----LVMSXXXXXXXXXXXXXXFPISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI 843
            F+D FS    +A +AE + T V VFA     I+  +     P      + ++                ISGGH+NP V+F  AL G  +      Y +AQ +G I GA+ ++               CT  V  P   GL   G+G  + + +EII +F  ++     A D ++  +LG +   I IG ++G  + V+        ++G  +NPAR  GPA+  G   +   W++W GP +
Sbjct:   10 FDDSFSAASLKAYVAEFISTLVFVFAGVGSAIAYTKLTGGAPLDPAGLVAVAVCHGFGLFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQF--------------CT-GVATP-THGL--SGVGAFEGVVMEIIVTFGLVYTVYATAADPKKG-SLGTIAP-IAIGFIVGANILVAGP------FSGGSMNPARSFGPAVASGD--YTNIWIYWVGPLV 222          
The following BLAST results are available for this feature:
BLAST of DY262747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
TIP23_ARATH6.696e-1425.94Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
TIP1_TOBAC8.745e-1428.45Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIP2_TOBAC1.142e-1328.45Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP1_MEDSA1.142e-1328.51Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
AQP1_RAT1.142e-1329.39Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4[more]
AQP1_MOUSE1.142e-1329.39Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3[more]
MIP_CHICK1.492e-1329.05Lens fiber major intrinsic protein OS=Gallus gallu... [more]
TIP22_ARATH1.948e-1325.52Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
AQP6_HUMAN1.948e-1327.84Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2[more]
TIP22_ORYSJ2.544e-1327.80Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100DD02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262747 ID=DY262747; Name=DY262747; organism=Citrus clementina; type=EST; length=1028bp
TCGGAACTGGCCGGTGATATAGAGGGTGAATATGGTGGTAACAGAGTCCA
GCCTTTTGCTACACCAAAGCAAGAGCAGAGACTGATGGATGAAGAGAAGA
AACAGAATCCCTCCACATGGAAAAAGATTTTGGGATTTGAAGACATTTTT
TCTGTGAAAGTGTGGAGAGCATCAATGGCTGAGCTGCTTGGTACAGCAGT
GCTGGTTTTTGCACTGGACACAATTGTCATTTCCTCCATTCAAACAGACA
CAAAGACCCCAAATCTTGTAATGTCAACTTTGGTCGCAATCACAATAACA
ATCCTCCTACTTGCAACTTTTCCAATTTCTGGTGGCCACATCAACCCATT
AGTGTCCTTTGCTGCAGCACTCACTGGCATCGCGTCCTTCTCAAGGGCAG
CCATATACATTTTGGCTCAATGTGTTGGTGGCATTTTCGGTGCACTAGCG
CTGAAAGCTGTGGTGACCAACAAAATTGCACATAATTTTTCACTTGGAGG
CTGCACCCTGAATGTTGTGGTACCTGGGCCAGATGGGCTTGTTGAGATCG
GCTTGGGGACTAGGCAGGCCCTTTGGCTTGAGATAATTTGCTCGTTTGTG
TTCCTTTTTGCTTCTGTGTGGATGGCTTTTGACTCCAGACAAGCCAAGGC
TCTTGGCAGAGTTACCGTATGCATTGTCATTGGAACAGTGTTGGGTCTTC
TGGTTTTTGTCTCGACAACTGTTACTGCTCAAAAGGGCTATGCCGGAGCT
GGGCTCAACCCGGCAAGATGTTTGGGCCCAGCACTCGTTAGAGGAGGCCA
TCTCTGGGATCGCCACTGGGTTTTCTGGGCCGGGCCGGCTATCGCTTGCG
TGGCATTTGCTTTGTACACTAAGGTCATTCCAAGTCAGAATTTGCACACC
ATCAAGTGATGTAGCTTGAAATTCAATCACCCTTTATTGGCTTCTTAGGA
TTAATTTGAAGGTGTTTCATGTTTTTANGGGATTAAAAAAGTGAAATATC
TATTGAAAATTATATTTTATTGTCTAAT
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