DY262747

Overview
NameDY262747
Unique NameDY262747
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1028
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: AQPZ1_AGRT5 (Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.110e-11
Identity = 58/187 (31.02%), Postives = 78/187 (41.71%), Query Frame = 1
Query:  325 ISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTV---CIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAFALYTKV 876
            ISGGH NP VS    + G    +    YI+AQ +G +  A AL  ++T K      +GG   N       G    G     AL +EII +  FL   +            GRV V    + IG  L L+  +S  VT         +NPAR  G AL  GG    + W+FW  P +     A+  K+
Sbjct:   57 ISGGHFNPAVSVGLTVAGKFPAANLVPYIVAQVLGAVVAAAALYVILTGKA--GAEIGGFAANGYGEHSPG----GYSLLSALLIEIILTAFFLVVIL--------GSTHGRVPVGFAPVAIGLALTLIHLISIPVT------NTSVNPARSTGQALFVGGWALQQLWLFWLAPILGGAIGAVVWKI 223          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: NIP32_ORYSJ (Aquaporin NIP3-2 OS=Oryza sativa subsp. japonica GN=NIP3-2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.062e-11
Identity = 61/227 (26.87%), Postives = 94/227 (41.41%), Query Frame = 1
Query:  178 AELLGTAVLVFALDTIVISSIQTDTKTPNLVMSXXXXXXXXXXXXXXFPISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEI-GLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVA 855
            AE  GT  L+F + + +I   Q       L ++                ISG H+NP VS A  + G    +    YI AQ +G I  + A+K +                    P   G+V +  +GT +A +LE + +FV LF    +A D    K L    + + +G  + +   V+   T      GA +NPAR LGPA+  G   + + WV+     +  VA
Sbjct:   99 AEFFGTFTLIFTVLSTIIMDEQHKGVESLLGIATSAGLAVTVLVLSLIHISGCHLNPAVSIAMTVFGHLPPAHLLPYIAAQILGSITASFAVKGMYH------------------PVNPGIVTVPKVGTVEAFFLEFVTTFVLLFIITALATDPNAVKEL----IAVAVGATIMMNALVAGPST------GASMNPARTLGPAIATG--RYTQIWVYLVATPLGAVA 295          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: AQP6_RAT (Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.062e-11
Identity = 58/192 (30.21%), Postives = 81/192 (42.19%), Query Frame = 1
Query:  328 SGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAFALYTKVIPSQNLHTI 903
            SG H NP V+ A  +    S  RA  YI AQ  G   GA  L  V    +         TL V       +V     T QA+ +E++ + + L   V+ + DSRQ   LG     I     LG L+ +         + G  +NPAR  GPA++ G   +  HW+FW GP    V  +L    I   +  T+
Sbjct:   74 SGAHANPAVTLAYLVGSHISLPRAVAYIAAQLAGATVGAALLYGVTPGGVRE-------TLGV------NVVHNSTSTGQAVAVELVLT-LQLVLCVFASMDSRQ--TLGSPAAMIGTSVALGHLIGIY--------FTGCSMNPARSFGPAVIVG--KFAVHWIFWVGPLTGAVLASLIYNFILFPDTKTV 239          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: NIP31_MAIZE (Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.305e-11
Identity = 56/185 (30.27%), Postives = 80/185 (43.24%), Query Frame = 1
Query:  325 ISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAFALYTKVI 879
            ISG H+NP ++ A A      + +   Y+  Q +  +  A ALK V      H F  GG T+      PD  V     T QA + E I SF  LF    +A D+R    L  + V   +   L +LV   TT        G  +NP R LGPA+  G   + + W++   P +  +A A   K +
Sbjct:  127 ISGAHLNPSLTIAFAALRHFPWLQVPAYVAVQALASVCAAFALKGVF-----HPFLSGGVTV------PDATV----STAQAFFTEFIISFNLLFVVTAVATDTRAVGELAGIAVGAAV--TLNILVAGPTT--------GGSMNPVRTLGPAVAAGN--YRQLWIYLLAPTLGALAGASVYKAV 284          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: AQPZ1_RHIME (Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.305e-11
Identity = 56/185 (30.27%), Postives = 77/185 (41.62%), Query Frame = 1
Query:  325 ISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAFALYTKVI 879
            ISGGH NP VS   A+ G    +    YILAQ  G I  A  L  + + K   +F LGG   N       G    G     AL  E++ +  FL     +   +     +G   + I +G  L  LV +  T T+        +NPAR  G AL  G     + W+FW  P I  V   +  K++
Sbjct:   57 ISGGHFNPAVSVGLAVAGRMPPASLVGYILAQVTGAIAAAAVLYVIASGKA--DFQLGGFAANGYGEHSPG----GYSLTAALVTEVVMTAFFLLI---ILGSTHSRVPVGFAPIAIGLGLTLIHLVSIPVTNTS--------VNPARSTGQALFVGDWAISQLWLFWVAPLIGAVIAGIVWKIV 224          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: NIP51_ARATH (Probable aquaporin NIP5-1 OS=Arabidopsis thaliana GN=NIP5-1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.929e-11
Identity = 67/242 (27.69%), Postives = 99/242 (40.91%), Query Frame = 1
Query:  154 VKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSXXXXXXXXXXXXXXFPISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVA-FALYTKV 876
            V + R   AE +GT +L+F      I + + D     +  +                ISG H+NP ++ A A      ++    YI AQ    I  + ALK V      H F  GG T+  V  G            QA  LE I +F+ LF    +A D+R    L  + V   +  +L +LV   +T        G  +NP R LGPA+  G   +   WV+   P +  ++  A+YT V
Sbjct:   74 VSLTRKLGAEFVGTFILIFTATAGPIVNQKYDGAETLIGNAACAGLAVMIIILSTGHISGAHLNPSLTIAFAALRHFPWAHVPAYIAAQVSASICASFALKGVF-----HPFMSGGVTIPSVSLG------------QAFALEFIITFILLFVVTAVATDTRAVGELAGIAVGATV--MLNILVAGPST--------GGSMNPVRTLGPAVASGN--YRSLWVYLVAPTLGAISGAAVYTGV 286          
The following BLAST results are available for this feature:
BLAST of DY262747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
AQPZ1_AGRT53.110e-1131.02Aquaporin Z 1 OS=Agrobacterium tumefaciens (strain... [more]
NIP32_ORYSJ4.062e-1126.87Aquaporin NIP3-2 OS=Oryza sativa subsp. japonica G... [more]
AQP6_RAT4.062e-1130.21Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1[more]
NIP31_MAIZE5.305e-1130.27Aquaporin NIP3-1 OS=Zea mays GN=NIP3-1 PE=2 SV=1[more]
AQPZ1_RHIME5.305e-1130.27Aquaporin Z 1 OS=Rhizobium meliloti GN=aqpZ1 PE=3 ... [more]
NIP51_ARATH6.929e-1127.69Probable aquaporin NIP5-1 OS=Arabidopsis thaliana ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100DD02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262747 ID=DY262747; Name=DY262747; organism=Citrus clementina; type=EST; length=1028bp
TCGGAACTGGCCGGTGATATAGAGGGTGAATATGGTGGTAACAGAGTCCA
GCCTTTTGCTACACCAAAGCAAGAGCAGAGACTGATGGATGAAGAGAAGA
AACAGAATCCCTCCACATGGAAAAAGATTTTGGGATTTGAAGACATTTTT
TCTGTGAAAGTGTGGAGAGCATCAATGGCTGAGCTGCTTGGTACAGCAGT
GCTGGTTTTTGCACTGGACACAATTGTCATTTCCTCCATTCAAACAGACA
CAAAGACCCCAAATCTTGTAATGTCAACTTTGGTCGCAATCACAATAACA
ATCCTCCTACTTGCAACTTTTCCAATTTCTGGTGGCCACATCAACCCATT
AGTGTCCTTTGCTGCAGCACTCACTGGCATCGCGTCCTTCTCAAGGGCAG
CCATATACATTTTGGCTCAATGTGTTGGTGGCATTTTCGGTGCACTAGCG
CTGAAAGCTGTGGTGACCAACAAAATTGCACATAATTTTTCACTTGGAGG
CTGCACCCTGAATGTTGTGGTACCTGGGCCAGATGGGCTTGTTGAGATCG
GCTTGGGGACTAGGCAGGCCCTTTGGCTTGAGATAATTTGCTCGTTTGTG
TTCCTTTTTGCTTCTGTGTGGATGGCTTTTGACTCCAGACAAGCCAAGGC
TCTTGGCAGAGTTACCGTATGCATTGTCATTGGAACAGTGTTGGGTCTTC
TGGTTTTTGTCTCGACAACTGTTACTGCTCAAAAGGGCTATGCCGGAGCT
GGGCTCAACCCGGCAAGATGTTTGGGCCCAGCACTCGTTAGAGGAGGCCA
TCTCTGGGATCGCCACTGGGTTTTCTGGGCCGGGCCGGCTATCGCTTGCG
TGGCATTTGCTTTGTACACTAAGGTCATTCCAAGTCAGAATTTGCACACC
ATCAAGTGATGTAGCTTGAAATTCAATCACCCTTTATTGGCTTCTTAGGA
TTAATTTGAAGGTGTTTCATGTTTTTANGGGATTAAAAAAGTGAAATATC
TATTGAAAATTATATTTTATTGTCTAAT
back to top