DY262747

Overview
NameDY262747
Unique NameDY262747
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1028
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig995 contig Ccv1_Contig995:34..1061. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 5.293e-19
Identity = 79/246 (32.11%), Postives = 109/246 (44.31%), Query Frame = 1
Query:  166 RASMAELLGTAVLVFALDTIVIS--SIQTDTKTPN--LVMSXXXXXXXXXXXXXXFPISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI-ACVAFALYTKVIPSQ 888
            RA+++E + TAV VFA +  V     +  DT T    LV++                 SGGH+NP V+F   +    SF+RAA+Y  AQ +G +   L L+          F+LG                  +  R AL LE++ +F  ++     A D R     G     + IG V G        + A   + GA +NPAR  GPALV  G  W  HWV+W GP I A +A ALY  V+  Q
Sbjct:   29 RAALSEFVATAVFVFAAEGSVYGLWKMYRDTGTLGGLLVVAVAHALALAAAVAVSRNASGGHVNPAVTFGVLVGRRISFARAALYWAAQLLGAVLAVLLLRLASGGMRPMGFTLGH----------------RIHERHALLLEVVMTFGLVYTVYATAVDRRSG---GGDIAPLAIGLVAG------ANILAGGPFDGAAMNPARAFGPALV--GWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQ 247          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.293e-19
Identity = 86/290 (29.66%), Postives = 122/290 (42.07%), Query Frame = 1
Query:   34 GGNRV---QPFATPKQEQRLMDEEKKQNPSTWKKILGFEDIFSVKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSXXXXXXXXXXXXXXF---PISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVT-VCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALV-RGGHLWDRHWVFWAGPAIACVAFALYTKVI 879
            G NR    QP  T  Q      EEK         +   E++ S   +RA +AE + T + ++     V+   ++ +K   + +               +    ISGGHINP V+F   L    S +RA  Y++ QC+G I GA  +K          F  G   L +   G    V  G      L  EI+ +FV     V+  F +  AK   R + V I+    +G  VF+    T      G G+NPAR LG A+V    H W+ HW+FW GP I     A+Y  VI
Sbjct:   11 GANRYSERQPIGTAAQGT----EEKDYKEPPPAPLFEAEELTSWSFYRAGIAEFVATFLFLYISILTVMGVSKSSSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVK---------GFQEG---LYMGAGGGANAVNPGYTKGDGLGAEIVGTFVL----VYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIP--ITGTGINPARSLGAAIVYNRSHAWNDHWIFWVGPFIGAALAAIYHVVI 278          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 9.029e-19
Identity = 77/257 (29.96%), Postives = 114/257 (44.36%), Query Frame = 1
Query:  139 EDIFSVKVWRASMAELLGTAVLVFALDTIVIS--SIQTDTKTPN--LVMSXXXXXXXXXXXXXXFPISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLV--FVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI-ACVAFALYT-KVIPS 885
            ED       RA+++E + TA+ VFA +  V+S   +  D  T    + ++                ISGGH+NP V+F A + G  S  RA +Y +AQ +G +   L L+          F+L                  G+G   A+ LE + +F  ++A      D ++            +GT+  L V   +   V A   + GAG+NPAR  GPALV  G  W  HWV+W GP + A +A  +Y   VIPS
Sbjct:   17 EDATHPDTIRAAISEFIATAIFVFAAEGSVLSLGKMYHDMSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLRLATGGMRPPGFALAS----------------GVGDWHAVLLEAVMTFGLMYAYYATVIDPKRGH----------VGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALV--GWRWRHHWVYWLGPFLGAGLAGLVYEYLVIPS 245          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 9.029e-19
Identity = 74/251 (29.48%), Postives = 111/251 (44.22%), Query Frame = 1
Query:  142 DIFSVKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSXXXXXXXXXXXXXXF---PISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVT-VCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALV-RGGHLWDRHWVFWAGPAIACVAFALYTKVI 879
            ++ S   +RA +AE + T + ++     V+   ++ +K   + +               +    ISGGHINP V+F   L    S +RA  YI+ QC+G + GA  +K         N    G   NVV P        G      L  EI+ +F+     V+  F +  AK   R + V I+    +G  VF+    T      G G+NPAR LG A++    H W+ HW+FW GP I     A+Y +VI
Sbjct:   47 ELKSWSFYRAGIAEFVATFLFLYITILTVMGVSKSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAVCGAGVVKGFQQGLYMGN----GGGANVVAP--------GYTKGDGLGAEIVGTFIL----VYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIP--ITGTGINPARSLGAAIIYNRDHAWNDHWIFWVGPFIGAALAAIYHQVI 279          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.011e-18
Identity = 78/257 (30.35%), Postives = 117/257 (45.53%), Query Frame = 1
Query:  139 EDIFSVKVWRASMAELLGTAVLVFALDTIVIS-SIQTDTKTPN--------LVMSXXXXXXXXXXXXXXFPISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALV-RGGHLWDRHWVFWAGPAIACVAFALYTKVI 879
            E++    ++RA +AE + T + ++     VI   IQ+DTK           L ++                ISGGHINP V+F   L    S  RA +Y++AQC+G I G   +KA    + +H  + GG        G + L + G  T   L  EII +FV ++ +V+ A D ++      V V   +   +G  VF+    T      G G+NPAR  G A++      WD HW+FW GP I     A Y + +
Sbjct:   28 EELTKWSLYRAVIAEFVATLLFLYVTVLTVIGYKIQSDTKAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGFVKAF---QSSHYVNYGG--------GANFLAD-GYNTGTGLAAEIIGTFVLVY-TVFSATDPKRNARDSHVPVLAPL--PIGFAVFMVHLATIP--ITGTGINPARSFGAAVIFNKSKPWDDHWIFWVGPFIGATIAAFYHQFV 267          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.011e-18
Identity = 72/243 (29.63%), Postives = 113/243 (46.50%), Query Frame = 1
Query:  163 WRASMAELLGTAVLVF-ALDTIVISSIQTD--TKTPNLVMSXXXXXXXXXXXXXXFPISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALV-RGGHLWDRHWVFWAGPAIACVAFALYTKVI 879
            WRA++AE + T + ++  + T++    +TD       L ++                ISGGHINP V+F   L    S  RA +Y++AQC G I G   +KA +  K  +N   GG             V +G     A   E+I +FV ++ +V+ A D +++     V   I+    +G  VF+    T      G G+NPAR  G A++     +WD HW+FW GP +  +A A Y + +
Sbjct:   39 WRAAIAEFIATLLFLYITVATVIGYKKETDPCASVGLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCAGAICGVGLVKAFM--KGPYNQFGGGA----------NSVALGYNKGTAFGAELIGTFVLVY-TVFSATDPKRSARDSHVP--ILAPLPIGFAVFMVHLATIP--ITGTGINPARSFGAAVIYNKKRVWDDHWIFWVGPFVGALAAAAYHQYV 264          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.627e-18
Identity = 71/240 (29.58%), Postives = 107/240 (44.58%), Query Frame = 1
Query:  139 EDIFSVKVWRASMAELLGTAVLVFALDTIVIS--SIQTDTKTPN-----LVMSXXXXXXXXXXXXXXFPISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGP 837
            ED       RA+++E + TA+ VFA +  V+S   +  D  T +     + ++                +SGGH+NP V+F A + G  S  RA +Y  AQ +G +   L L+          F+L                  G+G   A+ LE + +F F++A      D ++   LG +   + +G +LG        V A   + GAG+NPAR  GPALV  G  W  HWV+W GP
Sbjct:   19 EDATHPDTIRAAISEFIATAIFVFAAEGSVLSLGKMYHDHSTISTAGGLVAVALAHALGLAVAVAVAVNVSGGHVNPAVTFGALVGGRVSLVRAVLYWAAQLLGAVAATLLLRLATGGARPPGFALAS----------------GVGDGHAVLLEAVMTFGFVYAYYATVVDPKRGH-LGTIAP-LAVGFLLG------ANVLAGGPFDGAGMNPARVFGPALV--GWRWRHHWVYWLGP 232          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.627e-18
Identity = 85/290 (29.31%), Postives = 120/290 (41.38%), Query Frame = 1
Query:   34 GGNRV---QPFATPKQEQRLMDEEKKQNPSTWKKILGFEDIFSVKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSXXXXXXXXXXXXXXF---PISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVT-VCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALV-RGGHLWDRHWVFWAGPAIACVAFALYTKVI 879
            G NR    QP  T  Q      EEK         +   E++ S   +RA +AE + T + ++     V+   ++ +K   + +               +    ISGGHINP V+F   L    S +RA  Y+  QC+G I GA  +K          F  G   L +   G    V  G      L  EI+ +FV     V+  F +  AK   R + V I+    +G  VF+    T      G G+NPAR LG A+V    H W  HW+FW GP I     A+Y  V+
Sbjct:   11 GANRYTERQPIGTAAQGA----EEKDYREPPAAPVFEVEELTSWSFYRAGIAEFVATFLFLYISILTVMGVNKSASKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMAMQCLGAICGAGVVK---------GFQRG---LYMGSGGGANAVNPGYTKGDGLGAEIVGTFVL----VYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIP--ITGTGINPARSLGAAIVYNRAHAWHDHWIFWVGPFIGAALAAIYHVVV 278          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.481e-18
Identity = 70/238 (29.41%), Postives = 99/238 (41.60%), Query Frame = 1
Query:  166 RASMAELLGTAVLVFA-----LDTIVISSIQTDTKTPNLVMSXXXXXXXXXXXXXXFPISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAFAL 864
            RAS+AE   T + VFA     L  + I      +    L ++                +SGGH+NP VSF A + G  S  RA  Y +AQ +G I  AL L+ V  N     F                 V  G+G      LE++ +F  ++     A D +      R  V  +    +GL+V  +  V     + GA +NPA   GP+LV  G  W +HW+FW GP +     AL
Sbjct:   21 RASLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTNNMRPSGFH----------------VSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPK------RGAVSYIAPLAIGLIVGANILVGGP--FDGACMNPALAFGPSLV--GWQWHQHWIFWVGPLLGAALAAL 232          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: AQP_HAEIX (Aquaporin OS=Haematobia irritans exigua PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.481e-18
Identity = 70/252 (27.78%), Postives = 111/252 (44.05%), Query Frame = 1
Query:  127 ILGFEDIF-SVKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSXXXXXXXXXXXXXXFPISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAFALYTKVI 879
            ++G +DI  + K+WR  MAEL+GT  LV           +     P +  +                ISG HINP V+    + G  S  ++ +YI  QCVG I GA  +K  V+  ++         L++ V      + +G    QA+ +E + +F+ L   V    D  +    G   + + +    G L  +  T        GA +NPAR  GPA+V+  ++W  HWV+W GP +  +  AL  K +
Sbjct:   10 VVGVKDITDNKKIWRQLMAELIGTFFLVVIGVGSCTGGSEWSPSIPQIAFTFGLTVATLAQAIGH--ISGCHINPAVTVGFLIVGEMSIIKSVLYIAVQCVGAIAGAAVIKVGVSEAVS--------GLDLGVSSFSSTLTVG----QAVLIEALITFI-LVVVVKGVSDPGRTDIKGSAPLAVGLSIAAGHLCAIKLT--------GASMNPARSFGPAVVQ--NMWIDHWVYWVGPIVGAIVAALLYKFV 236          
The following BLAST results are available for this feature:
BLAST of DY262747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
TIP32_ORYSJ5.293e-1932.11Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
PIP15_MAIZE5.293e-1929.66Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
TIP31_MAIZE9.029e-1929.96Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
PIP12_MAIZE9.029e-1929.48Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP23_ARATH2.011e-1830.35Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
PIP1_ATRCA2.011e-1829.63Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
TIP32_MAIZE2.627e-1829.58Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
PIP13_ORYSJ2.627e-1829.31Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
TIPA_PHAVU4.481e-1829.41Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
AQP_HAEIX4.481e-1827.78Aquaporin OS=Haematobia irritans exigua PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100DD02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262747 ID=DY262747; Name=DY262747; organism=Citrus clementina; type=EST; length=1028bp
TCGGAACTGGCCGGTGATATAGAGGGTGAATATGGTGGTAACAGAGTCCA
GCCTTTTGCTACACCAAAGCAAGAGCAGAGACTGATGGATGAAGAGAAGA
AACAGAATCCCTCCACATGGAAAAAGATTTTGGGATTTGAAGACATTTTT
TCTGTGAAAGTGTGGAGAGCATCAATGGCTGAGCTGCTTGGTACAGCAGT
GCTGGTTTTTGCACTGGACACAATTGTCATTTCCTCCATTCAAACAGACA
CAAAGACCCCAAATCTTGTAATGTCAACTTTGGTCGCAATCACAATAACA
ATCCTCCTACTTGCAACTTTTCCAATTTCTGGTGGCCACATCAACCCATT
AGTGTCCTTTGCTGCAGCACTCACTGGCATCGCGTCCTTCTCAAGGGCAG
CCATATACATTTTGGCTCAATGTGTTGGTGGCATTTTCGGTGCACTAGCG
CTGAAAGCTGTGGTGACCAACAAAATTGCACATAATTTTTCACTTGGAGG
CTGCACCCTGAATGTTGTGGTACCTGGGCCAGATGGGCTTGTTGAGATCG
GCTTGGGGACTAGGCAGGCCCTTTGGCTTGAGATAATTTGCTCGTTTGTG
TTCCTTTTTGCTTCTGTGTGGATGGCTTTTGACTCCAGACAAGCCAAGGC
TCTTGGCAGAGTTACCGTATGCATTGTCATTGGAACAGTGTTGGGTCTTC
TGGTTTTTGTCTCGACAACTGTTACTGCTCAAAAGGGCTATGCCGGAGCT
GGGCTCAACCCGGCAAGATGTTTGGGCCCAGCACTCGTTAGAGGAGGCCA
TCTCTGGGATCGCCACTGGGTTTTCTGGGCCGGGCCGGCTATCGCTTGCG
TGGCATTTGCTTTGTACACTAAGGTCATTCCAAGTCAGAATTTGCACACC
ATCAAGTGATGTAGCTTGAAATTCAATCACCCTTTATTGGCTTCTTAGGA
TTAATTTGAAGGTGTTTCATGTTTTTANGGGATTAAAAAAGTGAAATATC
TATTGAAAATTATATTTTATTGTCTAAT
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