DY262747

Overview
NameDY262747
Unique NameDY262747
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1028
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig995 contig Ccv1_Contig995:34..1061. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.637e-15
Identity = 69/234 (29.49%), Postives = 99/234 (42.31%), Query Frame = 1
Query:  142 DIFSVKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSXXXXXXXXXXXXXXFPISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI 843
            ++ S   WRA  AE   T   VF    +  S   T      L ++                ISG H+NP V+FA  +    S  RA  Y+ AQ +G + GA  L +V    +      G   LN + PG    V +G    QA  +EI  +  F+   ++  +D R+   LG V + +     LG L  +         Y GAG+NPAR   PA++     +  HWV+W GP I
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFF--GLGASLRWTPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVLYSVTPPAVR-----GNLALNTLHPG----VSVG----QATTVEIFLTLQFVLC-IFATYDERRNGRLGSVALAVGFSLTLGHLFGMY--------YTGAGMNPARSFAPAILTRN--FTNHWVYWVGPII 210          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 6.056e-15
Identity = 74/246 (30.08%), Postives = 109/246 (44.31%), Query Frame = 1
Query:  163 WRASMAELLGTAVLVF-----ALD-TIVISSIQTDTKTPNLVMSXXXXXXXXXXXXXXFPISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI-ACVAFALYTKVI 879
            WRA +AE L   + VF     AL     + + QT  +  N+ +S                ISG H+NP V+    L+   S  RA +YI+AQCVG I     L  + +       SL G +L     G + L + G+ + Q L +EII   + L   V    D R+    G   + I +   LG L+ +         Y G G+NPAR  G A++   H +  HW+FW GP I   +A  +Y  ++
Sbjct:   11 WRAVVAEFLAMTLFVFISIGSALGFKYPVGNNQTAVQD-NVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITS-------SLPGNSL-----GRNDLAD-GVNSGQGLGIEII-GTLQLVLCVLATTDRRRRDLGGSAPLAIGLSVALGHLLAID--------YTGCGINPARSFGSAVIT--HNFSNHWIFWVGPFIGGALAVLIYDFIL 231          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.910e-15
Identity = 73/257 (28.40%), Postives = 113/257 (43.97%), Query Frame = 1
Query:  139 EDIFSVKVWRASMAELLGTAVLVF-ALDTIVISSIQTDTKTPN--------LVMSXXXXXXXXXXXXXXFPISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGH-LWDRHWVFWAGPAIACVAFALYTKVI 879
            E++    ++RA +AE + T + ++ ++ T++    QTD             L ++                ISGGHINP V+    L    S  R  +YI+AQC+G I G   +KA    + ++    GG        G + L + G      L  EII +FV ++ +V+ A D ++      V V   +   +G  VF+    T      G G+NPAR  G A++      WD  W+FW GP I   A A Y + I
Sbjct:   30 EELRKWPLYRAVIAEFVATLLFLYVSILTVIGYKAQTDATAGGVDCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTVGLFLARKVSLVRTVLYIVAQCLGAICGCGFVKAF---QSSYYTRYGG--------GANELAD-GYNKGTGLGAEIIGTFVLVY-TVFSATDPKRNARDSHVPVLAPL--PIGFAVFMVHLATIP--ITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPMIGAAAAAFYHQFI 269          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.033e-14
Identity = 53/173 (30.64%), Postives = 79/173 (45.66%), Query Frame = 1
Query:  325 ISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI 843
            ISG H+NP V+FA  +    S  RA  YI AQ +G + GA  L +V    +  N +L               +  G+   QA  +EI  +  F+   ++  +D R+   +G V + +     LG L  +         Y GAG+NPAR   PA++     +  HWV+W GP I
Sbjct:   60 ISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLAL-------------NTLHAGVSVGQATTVEIFLTLQFVLC-IFATYDERRNGRMGSVALAVGFSLTLGHLFGMY--------YTGAGMNPARSFAPAILTRN--FSNHWVYWVGPII 208          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.033e-14
Identity = 53/173 (30.64%), Postives = 79/173 (45.66%), Query Frame = 1
Query:  325 ISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI 843
            ISG H+NP V+FA  +    S  RA  YI AQ +G + GA  L +V    +  N +L               +  G+   QA  +EI  +  F+   ++  +D R+   +G V + +     LG L  +         Y GAG+NPAR   PA++     +  HWV+W GP I
Sbjct:   62 ISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVLYSVTPPAVRGNLAL-------------NTLHAGVSVGQATTVEIFLTLQFVLC-IFATYDERRNGRMGSVALAVGFSLTLGHLFGMY--------YTGAGMNPARSFAPAILTRN--FSNHWVYWVGPII 210          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.349e-14
Identity = 49/176 (27.84%), Postives = 79/176 (44.89%), Query Frame = 1
Query:  319 FPISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSR-QAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI 843
            F +SGGH+NP V+    + G  +  RA +Y+ AQ +      + L+ +    +    +LG                 G+   Q L +E+I +F  LF +  M  D R Q + +G +   +++G              A   + GA +NPAR  GPA+  G  +W  HWV+W GP +
Sbjct:   83 FHVSGGHLNPAVTVGILVRGHITKLRALLYVAAQLLASSLACILLRYLSGGMVTPVHALGA----------------GIRPMQGLVMEVILTFSLLFVTYAMILDPRSQVRTIGPLLTGLIVG----------ANSLAGGNFTGASMNPARSFGPAMATG--VWTNHWVYWIGPLL 230          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.349e-14
Identity = 51/176 (28.98%), Postives = 77/176 (43.75%), Query Frame = 1
Query:  319 FPISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQA-KALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI 843
            F +SGGH+NP V+ A    G  +  R+A+Y+ AQ +      + L+ +         +LG                 G+G  Q L +EII +F  LF       D R +    G +   +++G              A   ++GA +NPAR  GPAL  G  +W  HW++W GP I
Sbjct:   77 FHVSGGHLNPAVTVALLARGHITAFRSALYVAAQLLASSLACILLRYLTGGMATPVHTLGS----------------GIGPMQGLVMEIILTFSLLFVVYATILDPRSSVPGFGPLLTGLIVG----------ANTIAGGNFSGASMNPARSFGPALATG--VWTHHWIYWLGPLI 224          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.349e-14
Identity = 55/192 (28.65%), Postives = 85/192 (44.27%), Query Frame = 1
Query:  325 ISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI-ACVAFALYTKVIPSQNLH 897
            +SGGH+NP V+F A + G  +  RA +Y +AQ +G +   L LK          FSL                  G+    A+  EI+ +F  ++     A D ++        + I+    +GL+  V   +     + GA +NPA   GPA+V    +W  HWV+W GP I A +A  +Y  +    N H
Sbjct:   79 VSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLKVSTGGMETAAFSL----------------SYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKKG------DIGIIAPLAIGLI--VGANILVGGAFDGASMNPAVSFGPAVV--SWIWTNHWVYWVGPFIGAAIAAIVYDTIFIGSNGH 244          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.349e-14
Identity = 61/186 (32.80%), Postives = 84/186 (45.16%), Query Frame = 1
Query:  325 ISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALV-RGGHLWDRHWVFWAGPAIACVAFALYTKVI 879
            +SGGHINP V+    L    S  RA +Y+ AQC+G I G   +K   +            +L     G    +  G  T   L  EII +FV ++ +V+ A D ++      V V   +   +G  VF+    T      G G+NPAR LG A+V      W   W+FW GP I     ALY +VI
Sbjct:  103 VSGGHINPAVTLGLFLARKVSLVRALLYMAAQCLGAICGVALVKGFQS------------SLYDRYGGGANELAAGYSTGTGLAAEIIGTFVLVY-TVFSATDPKRNARDSHVPVLAPL--PIGFAVFMVHLATIP--ITGTGINPARSLGVAVVYNNNKAWSDQWIFWVGPFIGAAIAALYHQVI 271          
BLAST of DY262747 vs. ExPASy Swiss-Prot
Match: BIB_DROME (Neurogenic protein big brain OS=Drosophila melanogaster GN=bib PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.349e-14
Identity = 72/254 (28.35%), Postives = 99/254 (38.98%), Query Frame = 1
Query:  142 DIFSVKVWRASMAELLGTAVLVFALDTIVIS-SIQTDTKTPNLVMSXXXXXXXXXXXXXXFPISGGHINPLVSFAAALTGIASFSRAAIYILAQCVGGIFGALALKAVVTNKIAHNFSLGGCTLNVVVPGPDGLVEIGLGTRQAL--WLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAFAL-YTKVIPSQN 891
            +I +++ WR+ ++E L + + VF +        +     +  L  +                ISG HINP V+ A  +    S  RAA+YI AQC GGI GA  L                    V VPG  G ++  +    AL  W      F+  F  V   F S              IG       FVS             LNPAR LGP+ V   + WD HWV+W GP +  +A  L Y  +  S+N
Sbjct:   58 EIRTLEFWRSIISECLASFMYVFIVCGAAAGVGVGASVSSVLLATALASGLAMATLTQCFLHISGAHINPAVTLALCVVRSISPIRAAMYITAQCGGGIAGAALL------------------YGVTVPGYQGNLQAAISHSAALAAWERFGVEFILTFLVVLCYFVSTDPMKKFMGNSAASIGCAYSACCFVSMPY----------LNPARSLGPSFVL--NKWDSHWVYWFGPLVGGMASGLVYEYIFNSRN 281          
The following BLAST results are available for this feature:
BLAST of DY262747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
MIP_CANFA4.637e-1529.49Lens fiber major intrinsic protein OS=Canis famili... [more]
AQP1_PONAB6.056e-1530.08Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3[more]
PIP24_ARATH7.910e-1528.40Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
MIP_RAT1.033e-1430.64Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_MOUSE1.033e-1430.64Lens fiber major intrinsic protein OS=Mus musculus... [more]
TIP42_MAIZE1.349e-1427.84Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
TIP41_ORYSJ1.349e-1428.98Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]
TIP13_ARATH1.349e-1428.65Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
PIP24_ORYSJ1.349e-1432.80Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
BIB_DROME1.349e-1428.35Neurogenic protein big brain OS=Drosophila melanog... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100DD02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262747 ID=DY262747; Name=DY262747; organism=Citrus clementina; type=EST; length=1028bp
TCGGAACTGGCCGGTGATATAGAGGGTGAATATGGTGGTAACAGAGTCCA
GCCTTTTGCTACACCAAAGCAAGAGCAGAGACTGATGGATGAAGAGAAGA
AACAGAATCCCTCCACATGGAAAAAGATTTTGGGATTTGAAGACATTTTT
TCTGTGAAAGTGTGGAGAGCATCAATGGCTGAGCTGCTTGGTACAGCAGT
GCTGGTTTTTGCACTGGACACAATTGTCATTTCCTCCATTCAAACAGACA
CAAAGACCCCAAATCTTGTAATGTCAACTTTGGTCGCAATCACAATAACA
ATCCTCCTACTTGCAACTTTTCCAATTTCTGGTGGCCACATCAACCCATT
AGTGTCCTTTGCTGCAGCACTCACTGGCATCGCGTCCTTCTCAAGGGCAG
CCATATACATTTTGGCTCAATGTGTTGGTGGCATTTTCGGTGCACTAGCG
CTGAAAGCTGTGGTGACCAACAAAATTGCACATAATTTTTCACTTGGAGG
CTGCACCCTGAATGTTGTGGTACCTGGGCCAGATGGGCTTGTTGAGATCG
GCTTGGGGACTAGGCAGGCCCTTTGGCTTGAGATAATTTGCTCGTTTGTG
TTCCTTTTTGCTTCTGTGTGGATGGCTTTTGACTCCAGACAAGCCAAGGC
TCTTGGCAGAGTTACCGTATGCATTGTCATTGGAACAGTGTTGGGTCTTC
TGGTTTTTGTCTCGACAACTGTTACTGCTCAAAAGGGCTATGCCGGAGCT
GGGCTCAACCCGGCAAGATGTTTGGGCCCAGCACTCGTTAGAGGAGGCCA
TCTCTGGGATCGCCACTGGGTTTTCTGGGCCGGGCCGGCTATCGCTTGCG
TGGCATTTGCTTTGTACACTAAGGTCATTCCAAGTCAGAATTTGCACACC
ATCAAGTGATGTAGCTTGAAATTCAATCACCCTTTATTGGCTTCTTAGGA
TTAATTTGAAGGTGTTTCATGTTTTTANGGGATTAAAAAAGTGAAATATC
TATTGAAAATTATATTTTATTGTCTAAT
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