DY262755

Overview
NameDY262755
Unique NameDY262755
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1223
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262755 vs. ExPASy Swiss-Prot
Match: CAP11_ARATH (Putative clathrin assembly protein At1g33340 OS=Arabidopsis thaliana GN=At1g33340 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.785e-18
Identity = 58/155 (37.42%), Postives = 85/155 (54.84%), Query Frame = 3
Query:  318 TSTIRKAIGAVKDQTSIGLAKVASNLAP---ELEVAIVKATSHDDDPADEKYIREILSLTSYSRGYVHACMTAVSKRLGKTRDWLVAIKTLMLIHRLLNDGDPVFQEEILYATRRGTRLLNMSDFRDEAHSSSWDHSAFVRTYAMYLDQRLELIL 773
            ++  R+ +G  KD  SIG A V +       ++EVA+V+ATSHDD P D+K + EIL L S + G +      +S+RL KTRD LVA KTL+L HRLL       ++++  A   G   +  S F     S S+    F++ Y  YL +R+  I+
Sbjct:    6 SAKFRQVLGLAKDHASIGRAIVQNYNEKAFFDIEVAVVRATSHDDCPVDDKTMHEILFLVSNTPGSIPFLAEQISRRLAKTRDCLVAGKTLLLFHRLLRGSSRSIEQQLHIAHTSGHLQIGCSWFMMSLDSRSF---VFLQNYVAYLQERVGWII 157          
BLAST of DY262755 vs. ExPASy Swiss-Prot
Match: CAP16_ARATH (Putative clathrin assembly protein At4g40080 OS=Arabidopsis thaliana GN=At4g40080 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 3.257e-13
Identity = 45/147 (30.61%), Postives = 82/147 (55.78%), Query Frame = 3
Query:  339 IGAVKDQTSIGLAKVASNLAPE----LEVAIVKATSHDDD-PADEKYIREILSLTSYSRGYVHACMTAVSKRLGKTRDWLVAIKTLMLIHRLLNDGDPVFQEEI-LYATRRGTRLLNMSDFRDEAHSSSWDHSAFVRTYAMYLDQRL 761
            IG +KD+ S   A + S+          +++++AT+HD   P   +++  ILS  + SR    + + ++ +RL  T D  VA+K+L++IH ++  G  + Q+++ ++    G   L +S FRDE     W+ S++VR YA+YL+  L
Sbjct:   11 IGRIKDKASQSKAALVSSNTKSKTLSFHLSVLRATTHDPSTPPGNRHLAVILSAGTGSRATASSAVESIMERLHTTGDACVALKSLIIIHHIVKHGRFILQDQLSVFPASGGRNYLKLSAFRDEKSPLMWELSSWVRWYALYLEHLL 157          
BLAST of DY262755 vs. ExPASy Swiss-Prot
Match: CAP13_ARATH (Putative clathrin assembly protein At1g25240 OS=Arabidopsis thaliana GN=At1g25240 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.257e-13
Identity = 51/147 (34.69%), Postives = 77/147 (52.38%), Query Frame = 3
Query:  330 RKAIGAVKDQTS---IGLAKVASNLAPELEVAIVKATSHDDDPADEKYIREILSLTSYSRGYVHACMTAVSKRLGKTRDWLVAIKTLMLIHRLLNDGDPVFQEEILYATRRGTRLLNMSDFRD--EAHSSSWDHSAFVRTYAMYLDQ 755
            ++A GA+KD+ +   IG ++  S   P+L+ AI+ ATSHDD   D      +      S   +   + A+S R+ +TR W+VA+K LML+H +L       QE      RR     ++SDF D     S +W  +AF+R Y  +LDQ
Sbjct:    5 KRASGALKDRKTLFTIGFSRKTSFRNPDLDSAIIHATSHDDSSVDYHNAHRVYKWIRSSPANLKPLVHALSSRVNRTRSWIVALKALMLVHGVLCCKVTSLQE-----IRR--LPFDLSDFSDGHSRPSKTWGFNAFIRAYFSFLDQ 144          
BLAST of DY262755 vs. ExPASy Swiss-Prot
Match: CAP12_ARATH (Putative clathrin assembly protein At1g68110 OS=Arabidopsis thaliana GN=At1g68110 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.982e-11
Identity = 50/147 (34.01%), Postives = 75/147 (51.02%), Query Frame = 3
Query:  330 RKAIGAVKDQTS---IGLAKVASNLA-PELEVAIVKATSHDDDPADEKYIREILSLTSYSRGYVHACMTAVSKRLGKTRDWLVAIKTLMLIHRLLNDGDPVFQEEILYATRRGTRL-LNMSDFRD--EAHSSSWDHSAFVRTYAMYL 749
            ++A  A+KD+ S   +G ++  S+    +LE AI+KATSHDD   D      +      S   +   + A+S R+  TR W+VA+K+LML+H +L    P    E         RL  ++SDF D     S +W  + FVRTY  +L
Sbjct:    5 KRAAAAIKDRKSLLAVGFSRRNSSYRNADLEAAIIKATSHDDSSVDYSNAHRVYKWIRSSPLNLKTLVYAISSRVNHTRSWIVALKSLMLLHGVLCCKVPSVVGEF-------RRLPFDLSDFSDGHSCLSKTWGFNVFVRTYFAFL 144          
The following BLAST results are available for this feature:
BLAST of DY262755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CAP11_ARATH9.785e-1837.42Putative clathrin assembly protein At1g33340 OS=Ar... [more]
CAP16_ARATH3.257e-1330.61Putative clathrin assembly protein At4g40080 OS=Ar... [more]
CAP13_ARATH3.257e-1334.69Putative clathrin assembly protein At1g25240 OS=Ar... [more]
CAP12_ARATH3.982e-1134.01Putative clathrin assembly protein At1g68110 OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100DD10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262755 ID=DY262755; Name=DY262755; organism=Citrus clementina; type=EST; length=1223bp
CTTCTCTTTGACCTCTTTCTGTCCTCCACACTAAAACGAAAGAAAAAGAA
TCTAGAAGCCTAAACTCACCTCAGCTTTGAGTCAAAACGACGCCGGTTAA
CTCACCGGCGTGTCTCTCTTCTCCACAGATCTAAACGGTATATTCAAAAG
CTTCTCAGTTCTAGCGACCACCTAGTTAATGCTAATTAAGCACTCTTGAG
CTTAATTAATCACTCAATCTCAACTGTTTAAACGAACCAAACCATAACCG
TTTTGATCTTTACTCAGTTGAAAAAAGAACTTGTTCAAGTTTCAAAGAAT
CAACGGTAGCGATGTCGACGAGCACTATTCGAAAAGCGATCGGGGCCGTT
AAGGACCAGACGAGCATAGGCTTAGCGAAAGTGGCGAGCAACCTGGCGCC
GGAGCTGGAAGTCGCGATAGTCAAAGCCACGAGCCACGACGACGATCCGG
CTGACGAGAAATACATTCGCGAGATCTTGAGCTTGACCTCGTATTCTCGC
GGCTACGTGCACGCATGCATGACGGCTGTGTCGAAGCGTCTGGGGAAGAC
GCGCGACTGGCTCGTGGCTATCAAGACGCTCATGCTGATTCACCGGCTCC
TGAACGACGGCGATCCGGTGTTTCAAGAGGAGATCTTGTACGCGACGAGG
AGAGGAACGCGGCTTTTGAACATGTCCGATTTCAGAGACGAGGCTCACTC
GAGCTCGTGGGACCACTCGGCTTTTGTAAGAACTTATGCTATGTATTTAG
ATCAGAGACTTGAATTGATTTTGTTTGATAAAAAGAGTGGCTCTAAGTCT
GGTTCTAGTCATAATAATGGATTTGGATCTAGAGATAGGGATGATTTTCG
ATCACCGCCACCTAGACCTCCTGAGTATAATTATGGGGACTCTAGAATTG
ATACTGGTTACGGGAATTATGGGATGACGAGGAGATCTAGATCTTATGGT
GATGTGAGTGAGGCTGCAGGTGGGGGGAAGGAAAAAAAATGGTGACTCCG
TTGAGGGAATGGAACCGGAAAGGAAATTTGGGAAATGGGGGAATTGCAAA
AACTCTGGAATCGGTTCTTGGTCGGGAAAACCCTCTGGTTTTGGCAAAAA
AAAAAAGGAATTGGTTTGATTGGCCCTGTATCCCAAGGGTTAAGGAAAAT
TTTTCCAATTTAGGCTTGAATATTTTGGGAAGGGTTAACCCGGGTGTTAT
TTTTAAAAAATTTTTTTAGAAAA
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