DY262760

Overview
NameDY262760
Unique NameDY262760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1242
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262760_ssr52 microsatellite DY262760_ssr52:52..84. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_MOOTA (5'-nucleotidase surE OS=Moorella thermoacetica (strain ATCC 39073) GN=surE PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.136e-28
Identity = 79/192 (41.15%), Postives = 111/192 (57.81%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVT--AYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG 738
            I+VTNDDGI+APG+++L R L    R  V V AP+ E+SA+ H IT   P+ A    ++G    A AV+GTPADC  L +  AL    P LV+SGINMG+N G  V+YSGTV+GA E   +G PS+++S    GG     D++ AA+    +   I+     +  P    LN+++P   P   KG  +T+ G
Sbjct:    3 ILVTNDDGINAPGIKALSRSLARVGR--VAVVAPEKERSAIGHGITMHKPLRATEVTWEGPVEMALAVNGTPADCVKLALD-ALLDEEPSLVVSGINMGANLGTDVLYSGTVSGALEGCINGRPSLAVSLAGEGGV----DFSFAADFTSRLAGVII----KRGLPAGTLLNLNIPCLPPGEIKGLAITRLG 183          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_FLAPJ (5'-nucleotidase surE OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=surE PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.790e-28
Identity = 78/203 (38.42%), Postives = 111/203 (54.68%), Query Frame = 1
Query:  163 KPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARP--ADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS---YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQGTSIFK 753
            KP I+VTNDDGI APG+RSL+ V+      TV V APDS +SA+ H+IT    +      A+   VT Y+ SGTP DC  L V++ L    PDL +SG+N GSN   +V+YSGT++ A EA   G+P++  S   YDW              E   P I  I  E+  +  P+   LN++ P     + KG K+ +Q  ++++
Sbjct:    3 KPLILVTNDDGISAPGIRSLIAVMQEIG--TVVVVAPDSPQSAMGHAITINSTLHLNKISAENAAVTEYSCSGTPVDCVKLAVNEIL-KQKPDLCVSGVNHGSNSSINVIYSGTMSAAVEAGIEGIPAIGFSLLDYDW----------NADFETFKPYIKKIALEVLQKGLPDSVVLNVNFPKRKEEDLKGIKICRQAKAMWE 192          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_DESAP (5'-nucleotidase surE OS=Desulforudis audaxviator (strain MP104C) GN=surE PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.342e-28
Identity = 81/191 (42.41%), Postives = 109/191 (57.07%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPA-DFDG-VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQG 738
            I++TNDDGI APGL +L R  +S    T+ + APD E+SA  HSIT   PI  R A   DG    + V GTPADC  L + ++L P  PDLVISGIN+G N G  V+YSGTV+ A E   +GVPS++IS      ++   +    A   LP++     E R + +     LNI++P   P   G +LT+ G
Sbjct:    3 ILLTNDDGIFAPGLEAL-RNALSDLAETIYIIAPDRERSATGHSITVHRPIRVREACHADGNCCGWIVDGTPADCVKLAL-ESLLPETPDLVISGINLGPNLGTDVLYSGTVSAAMEGLINGVPSLAISLA-SHREAEFEEAAAFARRLLPLV----FEYR-EIFTANTLLNINVPPGKP--VGVRLTRLG 183          

HSP 2 Score: 27.335 bits (59), Expect = 5.342e-28
Identity = 18/62 (29.03%), Postives = 31/62 (50.00%), Query Frame = 3
Query:  846 RYIYPIGRRPSVS*GGKRGHIADPDTDWPFLREGYITVTPIGALSNADTESLLYFQRLAASW 1031
            RY Y +  +P        GH  DPDTD   +++ +I++TP+  +   D E+L   ++    W
Sbjct:  200 RYYYWMAGKPF----SPDGH--DPDTDIGAVKDRHISITPV-KIDLTDYEALDALKKWPVDW 254          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_DESVH (5'-nucleotidase surE OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=surE PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 6.215e-28
Identity = 87/244 (35.66%), Postives = 130/244 (53.28%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP-TDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKML--------STMTMDTDSAVTIE-TDTSTPLEED 873
            I +TNDDGI APGLR++ + L+    +TV V AP +E+SAV H++T   P+  +    +G   + V GTP DC  LG+S +L    P+LV+SGIN G+N G  ++YSGTV+ A EA   G  +V++SYD      +++ +   A A LP        I     PERC +NI+ P   + + KG ++  Q  +++   W    ++ +GG            T+   TD A+  E   T TPL  D
Sbjct:    3 IALTNDDGIQAPGLRAIYKALIEAG-HTVDVVAPVTEQSAVGHAVTIAMPLRVKVFHENGFRGHGVYGTPTDCMKLGLS-SLLEHKPELVVSGINAGANVGPDILYSGTVSAATEAAHMGYRAVALSYDSF-RPEDISAHARHAAALLP-------HIEWAGLPERCVVNINYPAVPVESIKGVRVCPQTRAVWH-DWYEHRTDPRGGSYWWLNGVIPPETVAPGTDRALLTEGYITVTPLRFD 235          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_DEIGD (5'-nucleotidase surE OS=Deinococcus geothermalis (strain DSM 11300) GN=surE PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 6.215e-28
Identity = 81/198 (40.91%), Postives = 108/198 (54.55%), Query Frame = 1
Query:  154 SDHKPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISAR---PADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQG 738
            S  +P I+V NDDGI +PG+++L   L       V V APD E+SAV H IT R P+  +    A F  + AY V GTPADC  LGV        PDLV+SGIN+GSN G  + +SGTVA A E    G+PS++ S    GG      +T  A     +  A+LA    +  P R  LN++ P  +P  +G ++TK G
Sbjct:    6 SPDRPRILVANDDGIFSPGIKALALALADVG--DVVVVAPDVEQSAVGHGITIRRPLRFKHTASAGFGTLPAYRVDGTPADCVVLGVHLL---GRPDLVVSGINLGSNLGDDLTHSGTVAAAIEGLALGLPSIAFSQQGNGG--GEYSFTAGAAYAARLARAVLA----KGLPPRVLLNVNFPAGLP--RGVRITKVG 190          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_DESVM (5'-nucleotidase surE OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=surE PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 8.118e-28
Identity = 85/244 (34.84%), Postives = 128/244 (52.46%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP-TDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKML--------STMTMDTDSAVTIE-TDTSTPLEED 873
            + +TNDDGI APGLR++ + L+    + V V AP +E+SAV H++T   P+  +    +G     V GTP DC  LG+S  L    PD+V+SGIN G+N G  ++YSGTV+ A EA   G P++++SYD      +     L+ +A       +LA +  Q  P RC +N++ P   +P  KG +   Q  +++K  W    ++ +GG            T+   TD A+  E   T TPL  D
Sbjct:    3 VALTNDDGIQAPGLRAMYKALLDAG-HEVHVVAPVTEQSAVGHAVTISLPLRVKEFHENGFRGRGVYGTPTDCVKLGLS-CLLDKKPDVVVSGINAGANVGPDILYSGTVSAATEAAHMGYPALAVSYD------SFRPADLSGQAAHAA--GLLATLDWQALPARCVVNLNYPAVPMPEVKGVRACPQTRAVWK-DWYDHRTDPRGGSYWWLNGVIPPETVAPGTDRALLTEGWITLTPLRFD 235          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_SULSY (5'-nucleotidase surE OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=surE PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.362e-27
Identity = 81/199 (40.70%), Postives = 111/199 (55.78%), Query Frame = 1
Query:  163 KPTIMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQGTSIFK 753
            K  + +TNDDG  + GL+++   L+  N + V   APD   S  SHS+T+  P+     + D    Y V GTPADC  LG++  L    PDL+ISGIN G N G  V YSGTV  ARE     +PSV+ S   VG   N N +   ++  + I+ A+L  I+N   P+  FLN+++PT IP    KG+ LTKQG   +K
Sbjct:    2 KKIVFLTNDDGYQSKGLQAIRNRLIEEN-FRVITVAPDRNMSGTSHSLTFTRPLKIEKIEEDFY--YIVDGTPADCVHLGLNVILQNQKPDLLISGINTGPNIGNDVFYSGTVGAAREGTLFCIPSVAFS---VGSSKNPN-FEDVSKVAVKIVKALL--IKN--LPKGTFLNVNIPT-IPAEKIKGFLLTKQGRGAYK 188          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_THEEB (5'-nucleotidase surE OS=Thermosynechococcus elongatus (strain BP-1) GN=surE PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.085e-27
Identity = 88/262 (33.59%), Postives = 132/262 (50.38%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPAD---FDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNK--GYKLTKQGTSIF------KMGWRRVTSEMQGGKMLSTMTMDTDSAVT-IETDTS-----TPLEEDLLFRREVRGAT 906
            +++ NDDG+ APG+R+L   L       V VC PD E+SA  HS+T   PI A          + A+A SGTP+DC  L +  AL    PD V+SGIN GSN G  ++YSGTV+ A E    G+PS++IS         V+D+  AA+      N +L  + N   P +  LN+++P  +P ++  G  +T+QG   +      ++  R  T     G+++     D + A T +E         TPL  DL + + V+  T
Sbjct:    3 LLIANDDGVFAPGIRTLADTLAIAGHEVVVVC-PDRERSATGHSLTVFDPIRAEVVSDRFHPRIKAWACSGTPSDCVKLALG-ALLEQPPDFVVSGINQGSNLGTDILYSGTVSAAMEGVIEGIPSIAISL----ASFTVHDFQPAAD----FTNRLLKALENAPLPPKVLLNVNVPA-LPASEIAGVVITRQGIRRYHDLFQKRVDPRGKTYYWLAGEVVEEYPQDPNQAPTDVEAIAQNLISITPLTFDLTYGQGVQDLT 253          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_CAMLR (5'-nucleotidase surE OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=surE PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.385e-27
Identity = 73/196 (37.24%), Postives = 111/196 (56.63%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVS-GTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYP--ERCFLNIDLPTDIPNNKGYKLTKQGTSIF 750
            I++TNDDG ++ GL  L ++L    +  + + AP +EKSA SHSIT   P+  +         Y +  GTPADC  L +       +PDL+ISGIN G+N G  + YSGT AGA EA  HG+P++++S  +   +  +N + LA    L I   I+ ++  + +P  ++ FLNI+ P+   N KG K+ K G  I+
Sbjct:    4 ILLTNDDGYESKGLIKLAKMLKKHFKAEITIVAPANEKSACSHSITLTKPLRFQKVK---KRFYKLEDGTPADCVYLALHALYKNHLPDLIISGINKGANVGEDITYSGTCAGAMEAVLHGIPAIALSQFYQDDQKELN-FKLA----LNITKKIVKKVFKKGFPLDKKEFLNINFPSSKTNFKGIKICKAGKRIY 191          

HSP 2 Score: 25.0238 bits (53), Expect = 3.385e-27
Identity = 16/51 (31.37%), Postives = 22/51 (43.14%), Query Frame = 3
Query:  816 GHRFSSYY*NRYIYPIGRRPSVS*GGKRGHIADPDTDWPFLREGYITVTPI 968
            G R  SY  +  I P G            H  +  +D   L++GY T+TPI
Sbjct:  187 GKRIYSYEAHSNINPRGIEYYWLAAANLDHEDEKKSDITLLKQGYATITPI 237          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_DESOH (5'-nucleotidase surE OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=surE PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.029e-27
Identity = 78/183 (42.62%), Postives = 105/183 (57.38%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFD-GVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLA-AEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNK 714
            I++TNDDGIDA GL +L RV    +R  V V AP++E+SAV H I+   P+     +   G   YAVSGTPADC  LG+   L P  PDLVISGIN G N G ++ YSGTVA AREA  +GVPS+++S D          Y  A  +    +   ++  +     P   FLN+++P D+P  +
Sbjct:    3 IVLTNDDGIDAEGLLALYRVFSRDHR--VVVVAPEAERSAVGHGISLHQPLRVNQRNHPAGGEWYAVSGTPADCVKLGILALLDPR-PDLVISGINAGLNHGAYMHYSGTVAAAREACVYGVPSIAVSMD---------GYPPAYFDEGASLTQTLVERLAEMEMPANTFLNVNMP-DLPRER 172          
The following BLAST results are available for this feature:
BLAST of DY262760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SURE_MOOTA2.136e-2841.155'-nucleotidase surE OS=Moorella thermoacetica (st... [more]
SURE_FLAPJ2.790e-2838.425'-nucleotidase surE OS=Flavobacterium psychrophil... [more]
SURE_DESAP5.342e-2842.415'-nucleotidase surE OS=Desulforudis audaxviator (... [more]
SURE_DESVH6.215e-2835.665'-nucleotidase surE OS=Desulfovibrio vulgaris (st... [more]
SURE_DEIGD6.215e-2840.915'-nucleotidase surE OS=Deinococcus geothermalis (... [more]
SURE_DESVM8.118e-2834.845'-nucleotidase surE OS=Desulfovibrio vulgaris (st... [more]
SURE_SULSY2.362e-2740.705'-nucleotidase surE OS=Sulfurihydrogenibium sp. (... [more]
SURE_THEEB3.085e-2733.595'-nucleotidase surE OS=Thermosynechococcus elonga... [more]
SURE_CAMLR3.385e-2737.245'-nucleotidase surE OS=Campylobacter lari (strain... [more]
SURE_DESOH4.029e-2742.625'-nucleotidase surE OS=Desulfococcus oleovorans (... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100DE03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262760 ID=DY262760; Name=DY262760; organism=Citrus clementina; type=EST; length=1242bp
CTCATTTGTTTTCCCCCATCTTAAGCCAAACGCACGACTAAGGACTAACA
ATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCGTCTTGGACCGAA
CAATCCTGTAGCCGGAGGAAGAAATGGAGCGTCGTGGAATCGCTATTGTT
AACTCCGATCACAAGCCAACGATTATGGTCACCAACGACGACGGGATCGA
CGCGCCTGGTTTGCGTTCCCTCGTCCGCGTTCTCGTCTCCACCAATCGCT
ACACCGTCCAAGTCTGCGCCCCCGATTCAGAAAAATCGGCTGTTAGTCAT
AGTATTACTTGGCGTCACCCAATTTCGGCCAGACCAGCAGATTTTGATGG
AGTTACCGCCTATGCCGTGTCTGGAACTCCAGCAGATTGTGCATCGTTGG
GTGTCTCGCAAGCACTCTTTCCTTCGGTCCCTGACCTGGTAATCAGTGGC
ATAAACATGGGTAGCAACTGTGGTTATCATGTTGTTTACTCTGGGACAGT
TGCAGGTGCTCGAGAGGCTTTCTTTCATGGTGTACCGTCTGTCTCTATAT
CATACGACTGGGTTGGAGGTAAGAGCAATGTTAATGATTACACACTTGCT
GCTGAGGCTTGTTTACCTATTATAAATGCAATACTGGCCGAGATCAGGAA
TCAAACTTATCCTGAAAGATGCTTTCTAAACATAGATCTACCTACAGATA
TTCCTAATAATAAGGGGTATAAACTTACTAAGCAGGGTACGAGCATATTC
AAAATGGGGTGGAGACGAGTCACTTCTGAGATGCAAGGAGGGAAGATGTT
ATCAACAATGACAATGGACACAGATTCAGCAGTTACTATTGAAACAGATA
CATCTACCCCATTGGAAGAAGACCTTCTGTTTCGTAGGGAGGTAAGAGGG
GCCACATTGCTGATCCTGATACAGATTGGCCATTTCTTCGAGAAGGATAT
ATTACCGTCACTCCTATTGGAGCCCTCTCTAATGCAGATACGGAGTCCCT
ACTCTACTTCCAAAGATTGGCTGCAAGTTGGTGGCTGGACCTGAAATCTT
CTTCTGCTTTGTAATGGTAAAGCCATCCCTAGGCTGAAATATGATGAATA
AAGAAGGTCTTGGCTTTTAAAATGGATTAAATGTTTTGAATCTCCCTTTG
GGGTCAAAAAATTTTTTGTGGTCCCCTCGTTTTAAGGGGAACCCCCGCCC
TCCTCGCCCCCCTTGTATTTGGCGGGTTTTTTTTCGGTGTTT
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