DY262760

Overview
NameDY262760
Unique NameDY262760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1242
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262760_ssr52 microsatellite DY262760_ssr52:52..84. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_PELCD (5'-nucleotidase surE OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=surE PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.262e-27
Identity = 76/192 (39.58%), Postives = 111/192 (57.81%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISA---RPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQG 738
            I+VTNDDG+ APG+ +L   L    +  V V APD ++SA+ H++T   P+ A   RP  F      AV GTP DC +LG+   L  SVPDLV++GIN G+N G  + YSGTV  A EA   GVP++++S +  G     ++Y  AA+A L     +  ++  +  P   FLN+++P      +G +LT+QG
Sbjct:    3 ILVTNDDGVHAPGIAALADSLHGLGQ--VVVVAPDRDRSAIGHALTLHAPLRADELRPGVF------AVDGTPTDCVNLGI-HGLLSSVPDLVVAGINRGANLGDDITYSGTVCAAMEATLMGVPALAVSLE--GDTFASSEYRQAADAAL----FLAQKVSEEGLPSDTFLNVNVPAG--RIRGIRLTRQG 177          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_NATTJ (5'-nucleotidase surE OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=surE PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 6.872e-27
Identity = 89/251 (35.46%), Postives = 134/251 (53.39%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDG----VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS---YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG----TSIFKMGW--RRVTSEMQGGKML-STMTMDTDSAVTIETDTS-TPLEEDL 876
            +++TNDDGI APG+ ++ + + S + +   V APD E+SA  H+IT   P+        G    +  Y+V+GTP+DC  L V +++    PDLVISGIN G+N G  V+YSGTV+GA EA    + S+++S   YD+        DY+ AA     I N I  +   + +     LN+++P    N  KG K+T+QG     +IF+  +  R        GK++  T  + TD A   E   S TP++ DL
Sbjct:    3 VLLTNDDGIYAPGIFAMAKEIASRDEFEAVVVAPDREQSATGHAITVHKPLRVNNVKKLGEKLEIPFYSVNGTPSDCVKLAV-ESVMDEKPDLVISGINRGANLGTDVLYSGTVSGAMEAAILNIKSIAVSLVDYDY-------EDYSTAASYTAYIANII--KDNPEEFENGTLLNVNVPAVEANQLKGVKITRQGFRQYENIFEKRFDPRGKAYYWMAGKVIEDTSDIKTDVASVKENYVSVTPIKYDL 243          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_BREBN (5'-nucleotidase surE OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=surE PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 8.975e-27
Identity = 74/178 (41.57%), Postives = 96/178 (53.93%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDG--VTAYAVSGTPADCASLGVSQALFP--SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP 693
            I+VTNDDGIDA G++ LV  L++     V + AP  EKS V H IT+R  +S    DF G  V A+AV+G PADC        LF     PD+V SGIN+G+N G  + YSGT +GAREA   GVP V++SYD    + N  D     E   P++                F NI++P
Sbjct:    3 ILVTNDDGIDALGIKRLVEALLTLEGAEVSIVAPVEEKSGVGHGITYRSALSPEQRDFYGMPVKAWAVNGNPADCVK-AAYHLLFEHGKKPDIVFSGINVGTNLGRDIYYSGTCSGAREAVILGVPGVALSYDNWFDQDNYGD---VVEMIRPLVKEFSDRAIKGELASEVFWNINIP 176          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_GEOSF (5'-nucleotidase surE OS=Geobacter sp. (strain FRC-32) GN=surE PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.172e-26
Identity = 70/181 (38.67%), Postives = 106/181 (58.56%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNK 714
            I++TNDDG+ APGL +L   +    +  V V APD E+SAV H++T  HP+ A      G   +AV GTP DC +LG+  +L    PD+V+SGIN G+N G  V YSGTV+ A EA   G+P++++S   +   +   +Y  AA+  +     + A +R +  P   FLN+++P D+P  +
Sbjct:    3 ILLTNDDGVRAPGLNALAEAMTVLGQ--VFVIAPDREQSAVGHALTLHHPLRANKI---GENIFAVDGTPTDCVNLGI-HSLLSFKPDIVVSGINRGANLGDDVTYSGTVSAAMEATLMGIPAIAVS---LVTSAEGTNYAAAAQFAV----KLAATVREKGLPADTFLNVNVP-DLPRER 169          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_SYMTH (5'-nucleotidase surE OS=Symbiobacterium thermophilum GN=surE PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.531e-26
Identity = 77/203 (37.93%), Postives = 112/203 (55.17%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTA--YAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQGTSIFKMGWRR 768
            +++TNDDGI APG+ +L   +       V   APD E+SA  H+IT   P+     +  G  A   +V+GTPAD A L + +A+ P  PDLVISGIN G+N G  + YSGTVA A E    G+P++++S D        +DY+ AA+    +   +L E      PE   LN+++P  +P    KG ++TK G  I++  W R
Sbjct:    4 VLLTNDDGIFAPGINALRARMEQIPGLEVWAVAPDRERSASGHAITTYRPLFPVRVEIPGAVAPCISVTGTPADSAKLAI-EAILPRRPDLVISGINRGANLGTDIFYSGTVAAALEGPILGIPALAVSLD----SMTSSDYSAAADFAAQLALKVLEE----GLPEGTLLNVNVPA-LPREAIKGVRVTKVGRRIYRDQWVR 196          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_GEOMG (5'-nucleotidase surE OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=surE PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.531e-26
Identity = 79/194 (40.72%), Postives = 109/194 (56.19%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISA---RPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNK--GYKLTKQG 738
            I+VTNDDG+ APG+RSL   L   N   V V APD E+SAV H++T  HP+ A   RPA F      AV GTP DC +LG+   L  S PD+V+SG+N G N G  + YSGTV+ A EA   G+P++++S    G   N   Y +A+     ++      +  +  P    LN+++P D+P  K  G  +T QG
Sbjct:    3 ILVTNDDGVRAPGIRSLAEAL--RNIGDVVVVAPDRERSAVGHALTLHHPLRASEIRPAVF------AVDGTPTDCVNLGI-HTLLGSRPDIVVSGVNCGGNMGDDITYSGTVSAAMEATLMGIPALAVSLATSGRGDN---YAVASAFAARLVRI----VSERGLPPDTLLNVNVP-DLPLEKLGGAVVTIQG 179          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_DESHY (5'-nucleotidase surE OS=Desulfitobacterium hafniense (strain Y51) GN=surE PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.999e-26
Identity = 88/244 (36.07%), Postives = 124/244 (50.82%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQGTSIFKMGWRRVTSE------MQGGKMLSTMTMDTDSAVTIETDTS-TPLEEDL 876
            I++TNDDG  APGL++L   L     Y V + APDS+KSA  HSIT   P+       D  T YAVSG PADC  L +  ++ P  PDLVISGIN G N G  V YSGTV+ A E    GVP++++S        +  DY  AA+     +   L ++R         +NI++P  +P    KG ++TK G ++++  +    +        Q G +   +  +TD     E   S TP+  DL
Sbjct:    3 ILLTNDDGYFAPGLQTLYTTLAEAG-YDVFIVAPDSQKSATGHSITLFEPLFITKHSLDRGTGYAVSGKPADCVKLAIQGSIIPK-PDLVISGINNGPNLGTDVFYSGTVSAAMEGVLLGVPAIAVSL----ASFSAVDYKPAAQ----FVALSLPKLRLGP----GLININIP-PLPEKEWKGVRVTKLGKAVYENVFEHRQAPYGRDYYWQAGTVSPEVDQETDLYAVQEGYVSITPMHSDL 231          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_DESHD (5'-nucleotidase surE OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=surE PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.999e-26
Identity = 88/244 (36.07%), Postives = 124/244 (50.82%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQGTSIFKMGWRRVTSE------MQGGKMLSTMTMDTDSAVTIETDTS-TPLEEDL 876
            I++TNDDG  APGL++L   L     Y V + APDS+KSA  HSIT   P+       D  T YAVSG PADC  L +  ++ P  PDLVISGIN G N G  V YSGTV+ A E    GVP++++S        +  DY  AA+     +   L ++R         +NI++P  +P    KG ++TK G ++++  +    +        Q G +   +  +TD     E   S TP+  DL
Sbjct:    3 ILLTNDDGYFAPGLQTLYTTLAEAG-YDVFIVAPDSQKSATGHSITLFEPLFITKHSLDRGTGYAVSGKPADCVKLAIQGSIIPK-PDLVISGINNGPNLGTDVFYSGTVSAAMEGVLLGVPAIAVSL----ASFSAVDYKPAAQ----FVALSLPKLRLGP----GLININIP-PLPEKEWKGVRVTKLGKAVYENVFEHRQAPYGRDYYWQAGTVSPEVDQETDLYAVQEGYVSITPMHSDL 231          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_CLOB6 (5'-nucleotidase surE OS=Clostridium botulinum (strain 657 / Type Ba4) GN=surE PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.611e-26
Identity = 85/246 (34.55%), Postives = 133/246 (54.07%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFD-GVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP-TDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKMLSTMTMDTDSAVTIETD---------TSTPLEEDL 876
            I++TNDDGI+A G+ +L  +L  +  + V + AP++++SA SHSIT   PI  +       V AY++SGTPADC  + + + L P   D+VISGIN G N G  ++YSGTV+ A E   + VPS+++S  ++  K+   +Y +AA+  L ++N     ++ +       LN+++P       KG K+ K G  IF   +     E +G K+L  +  D +  +   TD         T TPL  DL
Sbjct:    3 ILLTNDDGIEAEGINTLAELL--SKYHNVTMVAPENQRSASSHSITIYEPIIVKQVKKPYNVEAYSISGTPADCVRVALDK-LVPDNIDMVISGINKGLNIGNDILYSGTVSAAIEGSMYKVPSMAVSAQFI--KNKKENYKIAAKYALDMLN----RLKKEDLKNDVVLNLNIPFCSEEEIKGIKVCKVGNKIFNTRFSEEIDE-EGNKILK-LEGDINEDIYDGTDVYYIRNKYVTLTPLHYDL 237          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_GEOSL (5'-nucleotidase surE OS=Geobacter sulfurreducens GN=surE PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 3.411e-26
Identity = 75/191 (39.27%), Postives = 107/191 (56.02%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNK--GYKLTKQG 738
            I+VTNDDG+ APG+ +L   L      TV V APD E+SAV H++T  HP+        G+  +AV GTP DC +LG+   L    PD+V+SG+N G N G  + YSGTV+ A EA   G+P++++S    G  SN   Y  AA     +      E+ ++  P   FLN+++P D+P  +  G  +T QG
Sbjct:    3 ILVTNDDGVHAPGIVALAEALRLVG--TVTVVAPDRERSAVGHALTLHHPLRVTEI-MAGI--FAVDGTPTDCVNLGI-HTLLAEAPDIVVSGVNRGGNLGDDITYSGTVSAALEATLMGIPAIAVSLATNGHGSN---YRAAAAFAAQLAR----EVLDRGLPRDTFLNVNVP-DLPAEELGGPVITSQG 179          
The following BLAST results are available for this feature:
BLAST of DY262760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SURE_PELCD5.262e-2739.585'-nucleotidase surE OS=Pelobacter carbinolicus (s... [more]
SURE_NATTJ6.872e-2735.465'-nucleotidase surE OS=Natranaerobius thermophilu... [more]
SURE_BREBN8.975e-2741.575'-nucleotidase surE OS=Brevibacillus brevis (stra... [more]
SURE_GEOSF1.172e-2638.675'-nucleotidase surE OS=Geobacter sp. (strain FRC-... [more]
SURE_SYMTH1.531e-2637.935'-nucleotidase surE OS=Symbiobacterium thermophil... [more]
SURE_GEOMG1.531e-2640.725'-nucleotidase surE OS=Geobacter metallireducens ... [more]
SURE_DESHY1.999e-2636.075'-nucleotidase surE OS=Desulfitobacterium hafnien... [more]
SURE_DESHD1.999e-2636.075'-nucleotidase surE OS=Desulfitobacterium hafnien... [more]
SURE_CLOB62.611e-2634.555'-nucleotidase surE OS=Clostridium botulinum (str... [more]
SURE_GEOSL3.411e-2639.275'-nucleotidase surE OS=Geobacter sulfurreducens G... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA100DE03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262760 ID=DY262760; Name=DY262760; organism=Citrus clementina; type=EST; length=1242bp
CTCATTTGTTTTCCCCCATCTTAAGCCAAACGCACGACTAAGGACTAACA
ATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCGTCTTGGACCGAA
CAATCCTGTAGCCGGAGGAAGAAATGGAGCGTCGTGGAATCGCTATTGTT
AACTCCGATCACAAGCCAACGATTATGGTCACCAACGACGACGGGATCGA
CGCGCCTGGTTTGCGTTCCCTCGTCCGCGTTCTCGTCTCCACCAATCGCT
ACACCGTCCAAGTCTGCGCCCCCGATTCAGAAAAATCGGCTGTTAGTCAT
AGTATTACTTGGCGTCACCCAATTTCGGCCAGACCAGCAGATTTTGATGG
AGTTACCGCCTATGCCGTGTCTGGAACTCCAGCAGATTGTGCATCGTTGG
GTGTCTCGCAAGCACTCTTTCCTTCGGTCCCTGACCTGGTAATCAGTGGC
ATAAACATGGGTAGCAACTGTGGTTATCATGTTGTTTACTCTGGGACAGT
TGCAGGTGCTCGAGAGGCTTTCTTTCATGGTGTACCGTCTGTCTCTATAT
CATACGACTGGGTTGGAGGTAAGAGCAATGTTAATGATTACACACTTGCT
GCTGAGGCTTGTTTACCTATTATAAATGCAATACTGGCCGAGATCAGGAA
TCAAACTTATCCTGAAAGATGCTTTCTAAACATAGATCTACCTACAGATA
TTCCTAATAATAAGGGGTATAAACTTACTAAGCAGGGTACGAGCATATTC
AAAATGGGGTGGAGACGAGTCACTTCTGAGATGCAAGGAGGGAAGATGTT
ATCAACAATGACAATGGACACAGATTCAGCAGTTACTATTGAAACAGATA
CATCTACCCCATTGGAAGAAGACCTTCTGTTTCGTAGGGAGGTAAGAGGG
GCCACATTGCTGATCCTGATACAGATTGGCCATTTCTTCGAGAAGGATAT
ATTACCGTCACTCCTATTGGAGCCCTCTCTAATGCAGATACGGAGTCCCT
ACTCTACTTCCAAAGATTGGCTGCAAGTTGGTGGCTGGACCTGAAATCTT
CTTCTGCTTTGTAATGGTAAAGCCATCCCTAGGCTGAAATATGATGAATA
AAGAAGGTCTTGGCTTTTAAAATGGATTAAATGTTTTGAATCTCCCTTTG
GGGTCAAAAAATTTTTTGTGGTCCCCTCGTTTTAAGGGGAACCCCCGCCC
TCCTCGCCCCCCTTGTATTTGGCGGGTTTTTTTTCGGTGTTT
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