DY262760

Overview
NameDY262760
Unique NameDY262760
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1242
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262760_ssr52 microsatellite DY262760_ssr52:52..84. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_CAMJ8 (5'-nucleotidase surE OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=surE PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.211e-25
Identity = 74/196 (37.76%), Postives = 109/196 (55.61%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVS-GTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYP--ERCFLNIDLPTDIPNNKGYKLTKQGTSIF 750
            I++TNDDG ++ GL+ L+++L    +  + + AP SEKSA SHSIT   P+        G   Y +  GTPADC  L +       +PDLVISGIN G+N G  + YSGT AGA EA   G+P++++S  +   +  + DY  A    L I   I+  I ++ +P  ++ FLNI+ P      KG K+ K G  ++
Sbjct:    4 ILITNDDGYESEGLKKLIKMLTKEFKAKITIVAPASEKSACSHSITLTKPLRFVKV---GKRFYKLDDGTPADCVYLALHALYKKRLPDLVISGINKGANVGEDITYSGTCAGAMEAVLQGIPAIALSQFYKKSEKEL-DYKNA----LQITKKIIQNIFDKGFPLEKKEFLNINFPAK-SKIKGIKICKAGKRVY 190          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_WOLSU (5'-nucleotidase surE OS=Wolinella succinogenes GN=surE PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.887e-25
Identity = 77/199 (38.69%), Postives = 111/199 (55.78%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAV-SGTPADCASLGVSQALFP--SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYP--ERCFLNIDLP-TDIPNNKGYKLTKQGTSIF 750
            I++TNDDG D+PGL +L   L      TV   AP +EKSA  H +T   P+     D D    Y +  GTP DC  L ++ AL+   S PDL+ISGIN+GSN G  + YSGT +GA E   HG+PSV+ S       +   D+ LA +    ++  +  +I +  +P  +R FLN+++P   I   KGYK+T+ G  ++
Sbjct:    5 ILITNDDGFDSPGLLALKEALCDVAHLTV--VAPANEKSACGHGLTLTSPLRFIKLDDD---VYKLRDGTPTDCIYLALN-ALYEEHSKPDLIISGINLGSNMGEDITYSGTASGAMEGVIHGIPSVAFSQLLHDKNTFGFDFALAKK----VVRELTLKILSGGFPLGDRKFLNVNIPYVGIEEFKGYKVTEMGYRLY 193          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_CLOBA (5'-nucleotidase surE OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=surE PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.887e-25
Identity = 76/197 (38.58%), Postives = 113/197 (57.36%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVT--AYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT-DIPNNKGYKLTKQGTSIFK 753
            I++TNDDGI+A G+++L   +  + ++ V + AP  +KSA SHSI+   PI  R    DG+   AY++ GTPADC   G+S  L     DLVISGIN G N G  ++YSGTV+ A E   + VPS++IS D V    +  DY+ AA      +N ++     +   +   LN+++P  +  + KG K+ K G S +K
Sbjct:    3 ILITNDDGINARGIKTLAEKM--SKKHNVTIVAPREQKSASSHSISINIPIKIREEKIDGLDCKAYSLVGTPADCTQAGIS--LLVKDIDLVISGINRGFNSGTDILYSGTVSAAIEGAIYDVPSIAISMD-VKWDRDDEDYSKAAN----WVNKVVDLAEKKYLKKNVVLNVNVPNINEEDIKGLKVCKIGKSTYK 190          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_SYNS3 (5'-nucleotidase surE OS=Synechococcus sp. (strain CC9311) GN=surE PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.771e-25
Identity = 70/180 (38.89%), Postives = 101/180 (56.11%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPAD--FD-GVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS---YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP 693
            I+++NDDG+ A G+R+L     +       VC PD E+SA  H +T + PI A  AD  F+ G+ A+A SGTPADC  L + + L P  PDLV+SGIN G N G  V  SGTVA A E    G+P++++S   + W        ++  AA   + +  A LA+     +PE   LN+++P
Sbjct:    6 ILISNDDGVFADGIRTLAAAAAAAGHQVTVVC-PDQERSATGHGLTLQTPIRAERADELFEPGIKAWACSGTPADCMKLALFE-LLPEKPDLVLSGINHGPNLGTDVFCSGTVAAAMEGTLEGLPAMAVSSACFQW-------REFQAAAHLAIQVAEAALAD----QWPENLLLNLNVP 172          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_SYNPW (5'-nucleotidase surE OS=Synechococcus sp. (strain WH7803) GN=surE PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.771e-25
Identity = 74/188 (39.36%), Postives = 102/188 (54.26%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPAD--FD-GVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS---YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKG 717
            I+++NDDG+ A G+R+L     +       VC PD E+SA  H +T + PI A  AD  FD G++A+A SGTPADC  L + + L    PDLV+SGIN G N G  V  SGTVA A E    G+PS++IS   + W        D+  AA   + +  A L +     +PE   LN+++P   P   G
Sbjct:    6 ILISNDDGVFADGIRALAGAAAAAGHQVTVVC-PDRERSATGHGLTLQTPIRAEKADSLFDAGISAWACSGTPADCMKLALFE-LMDEAPDLVLSGINHGPNLGTDVFCSGTVAAAMEGTLEGLPSMAISSACFQW-------RDFQGAAALAVEVATAALRD----QWPENLLLNLNIPPCRPEVMG 180          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_PROMA (5'-nucleotidase surE OS=Prochlorococcus marinus GN=surE PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.771e-25
Identity = 75/208 (36.06%), Postives = 111/208 (53.37%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF---DGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSI---SYDWVGGKSNVNDYTLAAEACLPII-NAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVT 774
            I+++NDDG+ A G+R+L  +  ++  + V V  PD E+SA  H +T + PI A  AD    +G+ A+  SGTPADC  L +++ L    PDL++SGIN G N G  +  SGTVA A E    G+PS+++   S+ W         + LA E  L I  NAI     NQ +P++  LN+++P       G           K GW R++
Sbjct:    6 ILISNDDGVFAEGIRTLA-IAAASRGHEVTVVCPDQERSATGHGLTLQAPIRAERADELFNEGIQAWGCSGTPADCVKLALNE-LLKEKPDLILSGINHGPNLGTDIFCSGTVAAALEGTLEGIPSLAVSIASFQW-------RKFKLAGELALNIAENAI-----NQKWPKKLLLNLNIPPCDSEQMG-----------KPGWTRLS 188          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_PARL1 (5'-nucleotidase surE OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=surE PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 3.771e-25
Identity = 75/191 (39.27%), Postives = 107/191 (56.02%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDW-VGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG 738
            I+VTNDDGI APGL+ L ++    +R  V V AP+ E+S  +HS++  +P+  R         YAV GTP+DC  + V   L    PDLV+SGIN G N    V YSGT+A A E    G+PS+++S  +   G +NV   T  AE   P    IL ++    +PE   +NI+ P  +P +  G ++T+QG
Sbjct:   11 ILVTNDDGIHAPGLKVLEKIAHKLSR-DVWVVAPEDEQSGSAHSLSLANPLRVRKLT---ARKYAVRGTPSDCVLMAVRHILKDEQPDLVVSGINRGQNIADDVTYSGTIAAAMEGTQLGIPSIALSQAFGFSGSANVKWST--AEHFAP---DILKKLIAAGWPEEVLININFPDVVPGSVTGIEVTRQG 192          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_TRIEI (5'-nucleotidase surE OS=Trichodesmium erythraeum (strain IMS101) GN=surE PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 4.925e-25
Identity = 90/266 (33.83%), Postives = 130/266 (48.87%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADF---DGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAA-EACLPIINAILAEIRNQTYPERCFLNIDLP----TDIPNNKGYKLTKQGT----SIFK--MGWRRVTSEMQGGKMLSTMTMDTDSAV--TIETD---------TSTPLEEDLLFRREV 894
            I+V+NDDGI A G+RSL   L +       VC PD E+SA  H +T   PI A        D +TA+A SGTPADC  L +  +L  + PDLV++GIN G N G  + YSGTV+ A E     +PS++ S         +  YT    E  +    +++ +I +Q       LN+++P    T+I    G K+T+QG      IFK  +  R  T     G++L       D A+     TD         T TPL+ +L + R++
Sbjct:    3 ILVSNDDGIFAEGIRSLANGLAAVGHEVFVVC-PDKERSATGHGLTLHQPIRAEIVKSIFDDRITAWACSGTPADCVKLALF-SLLETQPDLVLAGINHGPNLGTDIFYSGTVSAAMEGIVENIPSIAFS---------LGSYTSREFEVAVNFAQSLVQKIESQPLDNLMLLNVNIPAVKETEI---AGVKITRQGVCRYIDIFKKRVDPRGKTYYWLAGELLEETEETKDQAIPDKYNTDVEAMREKYITITPLQYNLTYGRQL 254          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_SYNPX (5'-nucleotidase surE OS=Synechococcus sp. (strain WH8102) GN=surE PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 4.925e-25
Identity = 71/180 (39.44%), Postives = 98/180 (54.44%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPAD---FDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS---YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP 693
            ++++NDDG+ A G+R+L    V+       VC PD E+SA  H +T + PI A  AD     GVTA+A SGTPADC  L + + L    PDLV+SGIN G N G  V  SGTVA A E    G+PS++IS   + W         +   AE  + +    LA+     +PE   LN+++P
Sbjct:    3 VLISNDDGVFAEGIRTLAAAAVARGHDVTVVC-PDQERSATGHGLTLQTPIRAERADELFVPGVTAWACSGTPADCMKLALFE-LVKDKPDLVLSGINHGPNLGTDVFCSGTVAAAMEGTLEGIPSMAISSACFQW-------RQFQAGAELAVEVAEQALAD----QWPENLLLNLNIP 169          
BLAST of DY262760 vs. ExPASy Swiss-Prot
Match: SURE_RHOPB (5'-nucleotidase surE OS=Rhodopseudomonas palustris (strain BisB18) GN=surE PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 4.925e-25
Identity = 79/207 (38.16%), Postives = 108/207 (52.17%), Query Frame = 1
Query:  172 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSEKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQGTSIFKMGWRRVTSEMQG 789
            I+ TNDDGI APGL+ +V  +       V V AP+ ++S VSHS++   P+  R     G   +AV GTP DC  +G    L    PDLV+SG+N G N    VVYSGT+AGA E    G PS ++S ++    S  N  T   E  L    AIL +I +Q  P+   +NI+ P   P +  G ++T+QG      G+ RV     G
Sbjct:    3 ILCTNDDGIHAPGLK-IVEQIARQLSDDVWVVAPELDQSGVSHSLSLNDPLRLREI---GPRHFAVRGTPTDCVIMGARHILGDKGPDLVLSGVNKGRNVAEDVVYSGTIAGALEGSILGFPSFALSQEF----SMDNKGTPLWETALAHGPAILRKIIDQGVPKNTVININFPACAPGDVVGVRVTRQGKR--NQGFLRVDERRDG 199          
The following BLAST results are available for this feature:
BLAST of DY262760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SURE_CAMJ82.211e-2537.765'-nucleotidase surE OS=Campylobacter jejuni subsp... [more]
SURE_WOLSU2.887e-2538.695'-nucleotidase surE OS=Wolinella succinogenes GN=... [more]
SURE_CLOBA2.887e-2538.585'-nucleotidase surE OS=Clostridium botulinum (str... [more]
SURE_SYNS33.771e-2538.895'-nucleotidase surE OS=Synechococcus sp. (strain ... [more]
SURE_SYNPW3.771e-2539.365'-nucleotidase surE OS=Synechococcus sp. (strain ... [more]
SURE_PROMA3.771e-2536.065'-nucleotidase surE OS=Prochlorococcus marinus GN... [more]
SURE_PARL13.771e-2539.275'-nucleotidase surE OS=Parvibaculum lavamentivora... [more]
SURE_TRIEI4.925e-2533.835'-nucleotidase surE OS=Trichodesmium erythraeum (... [more]
SURE_SYNPX4.925e-2539.445'-nucleotidase surE OS=Synechococcus sp. (strain ... [more]
SURE_RHOPB4.925e-2538.165'-nucleotidase surE OS=Rhodopseudomonas palustris... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100DE03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262760 ID=DY262760; Name=DY262760; organism=Citrus clementina; type=EST; length=1242bp
CTCATTTGTTTTCCCCCATCTTAAGCCAAACGCACGACTAAGGACTAACA
ATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCGTCTTGGACCGAA
CAATCCTGTAGCCGGAGGAAGAAATGGAGCGTCGTGGAATCGCTATTGTT
AACTCCGATCACAAGCCAACGATTATGGTCACCAACGACGACGGGATCGA
CGCGCCTGGTTTGCGTTCCCTCGTCCGCGTTCTCGTCTCCACCAATCGCT
ACACCGTCCAAGTCTGCGCCCCCGATTCAGAAAAATCGGCTGTTAGTCAT
AGTATTACTTGGCGTCACCCAATTTCGGCCAGACCAGCAGATTTTGATGG
AGTTACCGCCTATGCCGTGTCTGGAACTCCAGCAGATTGTGCATCGTTGG
GTGTCTCGCAAGCACTCTTTCCTTCGGTCCCTGACCTGGTAATCAGTGGC
ATAAACATGGGTAGCAACTGTGGTTATCATGTTGTTTACTCTGGGACAGT
TGCAGGTGCTCGAGAGGCTTTCTTTCATGGTGTACCGTCTGTCTCTATAT
CATACGACTGGGTTGGAGGTAAGAGCAATGTTAATGATTACACACTTGCT
GCTGAGGCTTGTTTACCTATTATAAATGCAATACTGGCCGAGATCAGGAA
TCAAACTTATCCTGAAAGATGCTTTCTAAACATAGATCTACCTACAGATA
TTCCTAATAATAAGGGGTATAAACTTACTAAGCAGGGTACGAGCATATTC
AAAATGGGGTGGAGACGAGTCACTTCTGAGATGCAAGGAGGGAAGATGTT
ATCAACAATGACAATGGACACAGATTCAGCAGTTACTATTGAAACAGATA
CATCTACCCCATTGGAAGAAGACCTTCTGTTTCGTAGGGAGGTAAGAGGG
GCCACATTGCTGATCCTGATACAGATTGGCCATTTCTTCGAGAAGGATAT
ATTACCGTCACTCCTATTGGAGCCCTCTCTAATGCAGATACGGAGTCCCT
ACTCTACTTCCAAAGATTGGCTGCAAGTTGGTGGCTGGACCTGAAATCTT
CTTCTGCTTTGTAATGGTAAAGCCATCCCTAGGCTGAAATATGATGAATA
AAGAAGGTCTTGGCTTTTAAAATGGATTAAATGTTTTGAATCTCCCTTTG
GGGTCAAAAAATTTTTTGTGGTCCCCTCGTTTTAAGGGGAACCCCCGCCC
TCCTCGCCCCCCTTGTATTTGGCGGGTTTTTTTTCGGTGTTT
back to top