DY262846

Overview
NameDY262846
Unique NameDY262846
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1209
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY262846 vs. ExPASy Swiss-Prot
Match: U533_DICDI (UPF0533 protein OS=Dictyostelium discoideum GN=DDB_G0269062 PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 3.305e-18
Identity = 59/171 (34.50%), Postives = 91/171 (53.22%), Query Frame = 2 
Query:  158 HSLAFRVMRLCRPSLHVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLV---LPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYS 661
            H L  +VMRL +P++    P+  +  DL      ++    + +   L    V ++ S+D    +  L+ ++ + I + GL V   L    G IYLGE FC YIS+NN S  +VR+V +K E+QT   RI LLD+ +  V +   G   DF+V+ +VKE G + LVC   Y+
Sbjct:    5 HLLNLKVMRLSKPNIPTINPILCEKQDL-----PYETMSTSIDSTSLSMGSVNSSGSND----NNQLIGNNGNPINMEGLGVTSMLQLQSGVIYLGEMFCCYISLNNHSPYQVRNVFLKVELQTTSSRIPLLDSEQQSVPTFNPGFSSDFVVQREVKESGVNILVCAVNYT 166
[Close]
BLAST of DY262846 vs. ExPASy Swiss-Prot
Match: U533_DROME (UPF0533 protein CG4953 OS=Drosophila melanogaster GN=CG4953 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.615e-18
Identity = 60/174 (34.48%), Postives = 95/174 (54.60%), Query Frame = 2 
Query:  149 PGTHSLAFRVMRLCRPSL-HVEPPLRVDPTDLFIGEDIFDDPIAASNLPPLISSDVTTNKSSDLTYRSRFLLHDSADSIGLSGLLVLPQAFGAIYLGETFCSYISINNSSTLEVRDVVIKAEIQTDKQRILLL--DTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCTALYS 661
            P  H +A +VMRL RP+L  + P +  +PTDL                        ++++ SD       +    A+++    +L+LPQ+FG+IYLGETF SYI ++N++   V  V +KA++Q++  RI L   + +KSPV  +  GG  D ++ ++VKE+G H LVC   YS
Sbjct:    6 PDAHLVALKVMRLMRPTLVGLGPVVTCEPTDLV--------------------QRFSSSQESD------GMSGACAETLAAGQVLLLPQSFGSIYLGETFASYICVHNTTPNPVECVTVKADLQSNTSRINLSMHENAKSPV-VLPPGGTIDDVIRYEVKEIGTHILVCEVNYS 152
The following BLAST results are available for this feature:
BLAST of DY262846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
U533_DICDI3.305e-1834.50UPF0533 protein OS=Dictyostelium discoideum GN=DDB... [more]
U533_DROME9.615e-1834.48UPF0533 protein CG4953 OS=Drosophila melanogaster ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10AE02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262846 ID=DY262846; Name=DY262846; organism=Citrus clementina; type=EST; length=1209bp
AGGAGATGCGTCTGGTCTGAGTCTGATTTTCTCCTCCTACTCTTGGCTAA
CTGTAATAAAATTTTACTTCAATTGATTATCATCGTCAATTCATTCAGAT
TGAGTAAAGAGTGGTTGAGTGAGGAGGGGACTGAGGATGAGCTCGACGCC
AGGAACACACTCGCTAGCCTTCAGAGTGATGAGGCTATGTAGGCCGTCGT
TACACGTGGAGCCTCCTCTTCGCGTAGACCCCACCGATCTCTTCATCGGC
GAGGACATCTTCGACGATCCAATCGCCGCTTCCAACCTCCCTCCACTAAT
ATCTAGCGACGTCACCACCAACAAATCCTCCGATCTCACCTATCGCTCTA
GATTCCTCCTCCACGACTCCGCTGATTCCATCGGCCTCTCCGGCCTCCTC
GTCCTCCCCCAAGCCTTCGGGGCTATTTATCTGGGAGAGACGTTTTGTAG
CTACATTAGTATCAACAACAGTTCCACTTTAGAAGTTAGAGATGTTGTTA
TTAAGGCAGAAATTCAAACGGATAAGCAGAGGATCCTCCTTTTGGATACG
TCAAAATCACCTGTTGAATCAATACGAGCGGGCGGACGTTATGATTTCAT
CGTAGAACATGATGTCAAAGAACTCGGAGCTCATACGCTTGTGTGCACGG
CATTGTATAGTGATGGTGGGAGAGCGGAAATATCTTCCACAGTTTTTCAA
GTTCATTGTCTCCAATCCACTTTCAGTTCGGACCAAGGTCCGTGTTGTTA
AGGAAATAACATTTTTAGAGGCATGCATTGAGAATCATACAAAATCAAAC
CTTTATATGGACCAAGTTGAGTTTGAGCCTTCTCAGAATTGGAGTGCAAC
AATGCTTAAAGCTGATGGACCCCATTCTGATTACAATGCCCAAAGTAGAG
AGATATTTAAGTCACCAGTACTCATCAGATCTGGTGGGAGGGATCACAAC
TATCTATATCAGTTAAAAAGGTTGTCACATGGTTTCTTCCTCCCCAGTGG
AAAGTCCAGGGAAGTAATGTTCTTGGGAAACTTTCAAATACATTGGCGTA
ACAAATTTGGGTGAACCTGGTCCCCCTACCGAACCCACAAAATTTTTGGG
CCCACCCTTCCTATACAAGAAAATTGAACCTAAATGTTGGGGGGGGTTCC
CTTCGTTTTGTCGCCTAAAAAAAACCCTTTTTTTGGTTAAATTAAAAACC
TCCAAAACC
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