DY262897

Overview
NameDY262897
Unique NameDY262897
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1243
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262897 vs. ExPASy Swiss-Prot
Match: NCED1_MAIZE (9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 3.513e-39
Identity = 90/254 (35.43%), Postives = 132/254 (51.97%), Query Frame = 2
Query:  236 NIIDRP--LHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRA-IYSSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPHLTFSRFDANGGKAKDVPYMSINRPPFIHDFAITKRFAI 988
            N+++RP  L  + DP     GNFAPV E  P     V G++P  + G Y RNG NP   P    H F+GDGM+H++++  G A  Y+ R+ +T + + ER  G  +FP      +G   + +     AR   G V+   G G+AN              E DLPY ++   +GD+ET+GR+DFD +L  +M AHPK D  T E  A  +     P+L +  F  +G K+ DV  + + +P  IHDFAIT+   +
Sbjct:  105 NVLERPHGLPSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARNGANPCFDPVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDDVE-IPLEQPTMIHDFAITENLVV 357          
BLAST of DY262897 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 5.992e-39
Identity = 98/259 (37.84%), Postives = 144/259 (55.60%), Query Frame = 2
Query:  227 LFTNIIDRPLHPSVDPKHVFTGNFAPV-DELGPTECPVVDGKLPDSLTGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQIFPNV--FSGFYGLVDM-VQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPHLTFSRFDANGGKAKDVPYMSINRPPFIHDFAITKRFAIF 991
            L   ++ + +H +  P H  +GNFAP+ DE  P +   V G LP+ L G ++R GPNP+       H+F+GDGM+H +++  G+A Y SRYVKT + K E   G   F  +    GF+GL+ + VQ + +  ++L    +   G G ANT             E+D PY+IK   +GD++TLG  D+D+ L  S TAHPK D  T E F F +S    P+LT+     +G     VP ++I+ P  +HDFAIT+ +AIF
Sbjct:   29 LLERLVVKLMHDASLPLHYLSGNFAPIRDETPPVKDLPVHGFLPECLNGEFVRVGPNPKFDAVAGYHWFDGDGMIHGVRIKDGKATYVSRYVKTSRLKQEEFFGAAKFMKIGDLKGFFGLLMVNVQQLRTKLKIL----DNTYGNGTANTALVYHHGKLLALQEADKPYVIKVLEDGDLQTLGIIDYDKRLTHSFTAHPKVDPVTGEMFTFGYS-HTPPYLTYRVISKDGIMHDPVP-ITISEPIMMHDFAITETYAIF 281          
BLAST of DY262897 vs. ExPASy Swiss-Prot
Match: ZCD_CROSA (Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplast OS=Crocus sativus GN=ZCD PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.303e-21
Identity = 58/141 (41.13%), Postives = 83/141 (58.87%), Query Frame = 2
Query:  629 VNLKKGFGLANTXXXXXXXXXXXXGESDLPYIIKCTRE-GDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPHLTFSRFDANGGKA-KDVPYMSINRPPFIHDFAITKRFAIFSKTQ*PVSQPNVMVGKRV 1045
            V+  KG GLANT             E DLPY+++ + E GDI T+GR + +     S TAHPKTD  T ETF+F + P   P++T+SR+D +G K+  DVP  S   P F+HDFAIT+ +A+F   Q  +    ++ G+R+
Sbjct:    3 VDPTKGIGLANTSLQFSNGRLHALCEYDLPYVVRLSPEDGDISTVGRIENNVST-KSTTAHPKTDPVTGETFSFSYGPI-QPYVTYSRYDCDGKKSGPDVPIFSFKEPSFVHDFAITEHYAVFPDIQIVMKPAEIVRGRRM 141          
The following BLAST results are available for this feature:
BLAST of DY262897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
NCED1_MAIZE3.513e-3935.439-cis-epoxycarotenoid dioxygenase 1, chloroplastic... [more]
CCD1_ARATH5.992e-3937.84Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
ZCD_CROSA3.303e-2141.13Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromo... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10BA10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262897 ID=DY262897; Name=DY262897; organism=Citrus clementina; type=EST; length=1243bp
AAAAAAACATCATCCACTCTACATATCTACCAAAAGAATGGATCTCATGA
ATTACTTATCCTTAAAGATATCATACAATTCTCCACCAAAACCAAAGTTC
ACATATTACAATCACATCAACGAACAAAATATCCCATTCCGTTCTTCTCA
AAAGCCAAAAATATGTGCACCCATACAATCTTTAATGGGAACAAATTCAT
CCTACAACACCAAATCCGCGCCATCATTGTTTACAAACATTATTGATCGT
CCTCTTCATCCTTCTGTTGATCCAAAGCATGTCTTCACCGGAAACTTTGC
TCCGGTGGACGAGCTTGGCCCGACTGAGTGCCCGGTGGTTGATGGCAAGC
TTCCGGACTCTCTAACCGGCACGTACATCCGAAACGGACCAAACCCACAG
CACATGCCCCGTGGCCCTCTCCACTTCTTTGAAGGTGATGGCATGCTTCA
CTCAATGCAATTATCTAAAGGGCGTGCAATTTACAGTAGCCGCTATGTCA
AGACTTACAAGTACAAGCTCGAGAGAGATGCCGGTGGCCAAATTTTCCCC
AACGTCTTCTCAGGATTTTATGGGCTTGTGGATATGGTTCAATGTGTTGC
ATCGACAGCAAGAGTGTTGATGGGTCACGTAAATCTCAAGAAAGGATTTG
GTTTGGCCAATACAAGTCTTGCTTTCTTTTCGTCTAAGCTTCTTGCTCTT
GGTGAGTCCGATTTGCCCTACATTATAAAATGTACTCGAGAAGGCGACAT
TGAGACTTTAGGGAGATGGGATTTTGATGAAGAATTATTTGCAAGCATGA
CTGCGCATCCAAAGACAGACATGACCACAAAGGAGACTTTTGCTTTCAAA
TTTAGCCCCTTTTTTTCCCCTCATCTTACATTCTCCCGTTTTGATGCAAA
TGGTGGTAAGGCAAAGGATGTGCCCTATATGTCCATAAATCGACCACCTT
TCATCCATGATTTTGCTATAACCAAGAGGTTCGCTATTTTCTCAAAGACA
CAATAGCCGGTTTCACAGCCAAATGTGATGGTGGGGAAAAGGGTTGCCGA
CGGGTTTTTGATCCGGAAAAAGTCCCAAAAAATGGGAATCAAATGGAAAT
TGGCAAAAAGGGGTGGCCCAAAGGAAAAGGGGTTTAAGGTTTCGGGGGGG
TAAAGGGAAGGGCGGGGCTTCTTGGGGTGGGGGAAAAAGGGGAGGGGAGA
GAAGGGGGGGTTTTTTTGTTTGCCAAAAAGAGGCAAAAACCCC
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