DY262919

Overview
NameDY262919
Unique NameDY262919
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1297
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_METEP (3-deoxy-manno-octulosonate cytidylyltransferase OS=Methylobacterium extorquens (strain PA1) GN=kdsB PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 8.915e-25
Identity = 79/238 (33.19%), Postives = 118/238 (49.58%), Query Frame = 1
Query:  271 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVK----CVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDASETLRR 966
            +IPAR A++R   KPL +I G PMI   W R+ +   +  +VVATD + +AE  +  G   +MT     +G++R  EAL+ ++    +D+VVN+QGD P I+P II   V  L      + +      +PE+  DPN VK     V  N   A+ F+R   P+          P   H+G+ +Y    L  +  L    L+  E LEQL+ LE G ++  + V+    GVD    L R
Sbjct:    7 LIPARLAATRLPSKPLADIAGVPMIVHVWRRA-VEAGIGPVVVATDTDAVAEVIEAQGGLAVMTRPDHPSGSDRLAEALEIVDPDGNHDVVVNVQGDLPTIDPAIIAASVMPLADPQVDIATLCAVIHRPEEMDDPNVVKIIGHTVGPNRLRALAFTRARAPWGDG-------PLFHHIGLYAYRRKALARFVALPQGELEQREKLEQLRALEAGMRIDAMIVEDLPLGVDTPADLER 236          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_METC4 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=kdsB PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 8.915e-25
Identity = 79/238 (33.19%), Postives = 118/238 (49.58%), Query Frame = 1
Query:  271 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVK----CVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDASETLRR 966
            +IPAR A++R   KPL +I G PMI   W R+ +   +  +VVATD + +AE  +  G   +MT     +G++R  EAL+ ++    +D+VVN+QGD P I+P II   V  L      + +      +PE+  DPN VK     V  N   A+ F+R   P+          P   H+G+ +Y    L  +  L    L+  E LEQL+ LE G ++  + V+    GVD    L R
Sbjct:    7 LIPARLAATRLPSKPLADIAGVPMIVHVWRRA-VEAGIGPVVVATDTDAVAEVIEARGGLAVMTRPDHPSGSDRLAEALEIVDPDGNHDVVVNVQGDLPTIDPAIIAASVMPLADPQVDIATLCAVIHRPEEMDDPNVVKIIGHTVGPNRLRALAFTRARAPWGDG-------PLFHHIGLYAYRRKALARFVALPQGELEQREKLEQLRALEAGMRIDAMIVEDLPLGVDTPADLER 236          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_RICTY (3-deoxy-manno-octulosonate cytidylyltransferase OS=Rickettsia typhi GN=kdsB PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.164e-24
Identity = 82/242 (33.88%), Postives = 122/242 (50.41%), Query Frame = 1
Query:  271 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDI--VVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDASETLRR*IIYA*EN 990
            IIP+R  S+R   KPL  I    +I+R +++   A  + H  VATD E+IA   ++ G  VI+T      GT+R  EA + +    +I  ++N+QGD P IE   I  +++ L+ +   +  T V  +  E     + V   VD  G A+YFSR LIP+            L HLGI  +  N L+ +  L  T L+  E LEQL++LENG  +    V+     VD  E L++ I +  EN
Sbjct:    9 IIPSRLNSTRLIQKPLQLIGSITLIERVFKQVNKAN-IQHTYVATDSEEIANIIKKIGGKVILTDSDIPTGTDRTYEAFKLIPNNNNIHYIINVQGDIPFIEHRSILKIIEYLKNSEYDIV-TPVVRVDRESIEASSNVTVAVDYMGKALYFSRSLIPHGAE-------ELLYHLGIYGFRKNALEKFVSLKQTFLEKTERLEQLRILENGMTIGTCLVEDVPISVDTEEDLKKAIKFCREN 241          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_RHOP5 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Rhodopseudomonas palustris (strain BisA53) GN=kdsB PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.164e-24
Identity = 86/242 (35.54%), Postives = 127/242 (52.48%), Query Frame = 1
Query:  271 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPED-AFDPNRVKCVVDNHG----YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAS---ETLRR 966
            +IPAR A++R  GKPL++I G PMI     R++ A  +  + VATD  +IA   +  G  V+MT     +G++R  EAL  L+   + +IVVN+QGD P I P+ I  V+  L A P    +T    +  E+ A +PN VK +          A+YF+R   P+ +        P   H+G+ +Y    L+ +  L P+ L+  E LEQL+ LE G ++ V  VD    GVD +   ET RR
Sbjct:    9 LIPARMAATRLPGKPLLDIAGLPMIVHVLRRAE-AADVGPVAVATDTAEIAAAVEAHGGRVVMTRADHPSGSDRVAEALGVLDPDGRIEIVVNLQGDFPTIRPDNIGAVLGPL-ADPAVDIATLCAEIHTEEEATNPNVVKVIGSPLSPARLRALYFTRATAPWGEG-------PRYHHIGLYAYRRAALQRFIALPPSALEQREKLEQLRALEAGMRIDVGIVDTVPRGVDTAADLETARR 241          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB_RICPR (3-deoxy-manno-octulosonate cytidylyltransferase OS=Rickettsia prowazekii GN=kdsB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.521e-24
Identity = 78/234 (33.33%), Postives = 120/234 (51.28%), Query Frame = 1
Query:  271 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDI--VVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDASETLRR 966
            IIP+R  S+R   KPL  I    +I+R +++   A  + H  VATD E+IA   ++    VI T  +   GT+R  EA + +   ++I  ++N+QGD P IE   I  +++ L+ +   +  T V  +  E   D + V   VD  G A+YFSR  IP+           +L HLGI  +  N L+ +  L  T L+  E LEQL++LENG  +    V++    VD  E L++
Sbjct:    9 IIPSRLNSTRLIQKPLQLIGSITLIERVFQQVNKAN-IHHTYVATDSEEIANVIKKISGKVIFTDSNIPTGTDRAYEAFKLIPNNHNIHYIINVQGDIPFIEHRSILKIIEYLKNSEYDIV-TPVVKVDRESIEDSSNVTVAVDYTGKALYFSRSPIPHGAE-------EFLYHLGIYGFRKNALEKFVSLKQTFLEKTERLEQLRILENGMTIGTCLVENVPISVDTEEDLKK 233          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KDSB2_BURA4 (3-deoxy-manno-octulosonate cytidylyltransferase 2 OS=Burkholderia ambifaria (strain MC40-6) GN=kdsB2 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 5.778e-24
Identity = 81/241 (33.61%), Postives = 120/241 (49.79%), Query Frame = 1
Query:  271 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIID---GVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGK----VNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIK-VDHEAHGVDASETLRR 966
            +IPAR+ S+R  GKPLV++ G+PMI R   R + A     +VVA DD +IAE     G    MT     +GT+R  E  +       D V+N+QGDEPL+   ++    G   A  A   A  +  +  +   D  +P  VK VVD+ G A+YFSR  IP+ + G+          +L H+G+  Y +  L+      P  L+  E LEQL+ L  G  + V++  D    G+D  + + R
Sbjct:   13 VIPARYGSTRLPGKPLVDLEGEPMIVRVHARVRRALPEADIVVAIDDARIAEVLDARGIRFAMTDTGHASGTDRAAEVARVSGWPDTDAVLNVQGDEPLVPTALLQAFAGFCGATAALGVATVACPIGEVALLD--EPAIVKVVVDHRGRALYFSRAAIPFCRDGRPADSAGSNGLFLRHIGLYGYTNATLQALSRAAPCELEQLEKLEQLRALWLGMPIDVMRWPDAPPAGIDTPDDVAR 251          
BLAST of DY262919 vs. ExPASy Swiss-Prot
Match: KPSU1_ECOLX (3-deoxy-manno-octulosonate cytidylyltransferase (Fragment) OS=Escherichia coli GN=kpsU PE=3 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 4.295e-11
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = 1
Query:  256 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMT 462
            S+ V +IPAR+ SSR  GKPL++I+GKPMIQ  +ER+     +  + VATDD+++ +  Q FG   IMT
Sbjct:    2 SKAVIVIPARYGSSRLPGKPLLDIVGKPMIQHVYERALQVAGVAEVWVATDDQRVEKAVQAFGGKAIMT 70          
The following BLAST results are available for this feature:
BLAST of DY262919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 397
Match NameE-valueIdentityDescription
KDSB_METEP8.915e-2533.193-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_METC48.915e-2533.193-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_RICTY1.164e-2433.883-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_RHOP51.164e-2435.543-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_RICPR1.521e-2433.333-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB2_BURA45.778e-2433.613-deoxy-manno-octulosonate cytidylyltransferase 2 ... [more]
KPSU1_ECOLX4.295e-1147.833-deoxy-manno-octulosonate cytidylyltransferase (F... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10BC10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262919 ID=DY262919; Name=DY262919; organism=Citrus clementina; type=EST; length=1297bp
TCAAACTTCAAAGCAATTAGGAAGCTTCGTTGAATAAGATGTGGATTGTG
GATCAGTATGCCAGTTTCTCATAGTCGTGTAAAATCAGAATTAGAGAGTG
AGAGAGATTAAAAGATGAGCTCAAAATCAATATGTTCGCCGTCCGAATCT
TCTTCCTCAACAAAGTCGTGGATCGTGCACGGCATTGTAGCCGGAGCAGC
AATTGCTGTTGCCGTCGGTGCGCGCGCCTATCTGGGTCGATCGAAGAACT
TTCGGAGCCGGGTCGTGGGTATCATACCCGCCCGTTTCGCTTCTTCTCGC
TTCGAGGGCAAACCCCTTGTTAATATCCTCGGTAAACCTATGATCCAGAG
AACATGGGAAAGGTCCAAACTGGCAACCACATTGGATCACCTGGTTGTGG
CAACGGATGATGAGAAGATTGCAGAATGCTGCCAACAATTTGGTGCTGAT
GTGATAATGACTTCAGAATCTTGCCGAAATGGTACTGAAAGATGCAACGA
AGCATTACAAAAGCTGGAGAAGAAGTACGATATTGTTGTCAATATTCAGG
GAGATGAACCTCTTATTGAACCAGAGATTATAGATGGTGTTGTGAAAGCT
CTGCAGGCAGCCCCAGATGCAGTGTTCAGTACTGCTGTGACATCTTTAAA
ACCTGAAGATGCATTTGATCCAAATCGGGTGAAATGTGTTGTGGATAATC
ATGGTTATGCCATATATTTTTCAAGGGGATTAATTCCATATAACAAGTCA
GGAAAAGTCAATCCACAATTTCCATATTTGCTTCATCTTGGAATTCAGAG
CTATGACTCAAACTTCCTGAAGATATATCCAGGCCTTCATCCTACTCCCC
TACAACTAGAAGAGGATCTAGAACAGCTGAAAGTCCTTGAGAATGGCTAT
AAGATGAAGGTTATAAAGGTAGACCATGAAGCTCACGGTGTTGATGCTTC
AGAGACGTTGAGAAGATGAATCATTTATGCGTGAGAAAACTTGGTCTAGT
TTTAGTGACTAATCTGATTAAAAAGAAGGATGCAAATTTGCCTGTACAGC
AGTCAGCTGGCTCATGTTAATTAAGTTGGGATGGGGGGGGGGTTCTTTCC
CCCGTGGAGGTCCCTTCCCCGGGAAAAAAATTTTATTTAATTTTGCCTGG
CCGGGGTTTTTCCCATTTTTGGGGAATACCCGGAAGTTTTTTTGGGGGGG
TGCTTTTTGACACCAATTGCTTTTGGGAGAAAAAACAAAATTTTTTAGAA
TTTAAAAAAGGTGTTTTTTATTTTTGTTAAAAAAAATTATTATCTTT
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