DY262963

Overview
NameDY262963
Unique NameDY262963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1246
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY262963_ssr576 microsatellite DY262963_ssr576:576..587. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: PABP_LODEL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Lodderomyces elongisporus GN=PAB1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.286e-11
Identity = 52/205 (25.37%), Postives = 94/205 (45.85%), Query Frame = 3
Query:  282 SEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXN-RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 893
            S+ D+E  L  +E  +N++    ++V N+  +    +   LF   G +  + +  D   G+S+GFGFV     E    A ++ N  E+ G+ + V                                ++V NL   +D   LE  F+  G +  +KV+ D ++G+S+GFGFV +S+ EE   AI  +N   + G+ + V++A+ +
Sbjct:  232 SKKDRESKL--EEMKANYT---NIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKD-AEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVD-DAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRK 429          
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 5.286e-11
Identity = 47/183 (25.68%), Postives = 82/183 (44.81%), Query Frame = 3
Query:  351 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARHK 899
            +F+ NL  ++D+  L   F   GN+   +V  D+  G S+G+GFV   + E    A +  NG  L  + + V                               +Y+ N+   V+D     LF + G++  A +  D E G+SRGFGFV +S+ E    A++ +N  ++  + + V  A+ +H+
Sbjct:  132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF---------TNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHE 303          
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: NUCL_XENLA (Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 5.286e-11
Identity = 46/179 (25.70%), Postives = 83/179 (46.37%), Query Frame = 3
Query:  351 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAE 887
            LFV N+P+S    +L  +FE A ++     I     G ++G  +V  S+ +E   A ++  G E+EGR + V+                              + V NLS+   + +L  +F +        +   +  GR++GF F+ +SSAE+  +A+DS N  ++ GR+IR+  ++
Sbjct:  327 LFVKNIPYSTTVEELQEIFENAKDIR----IPTGKDGSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFVDFTGEKSQNSGNKKGPEGDSKV---------LVVNNLSYSATEDSLREVFEKA-----TSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQ 487          
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 5.286e-11
Identity = 44/162 (27.16%), Postives = 73/162 (45.06%), Query Frame = 3
Query:  348 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAID 833
            K+F+G L +      L   F   G++    V+ D  T RSRGFGFVT S    V+    Q   +EL+G+ +                                +++VG LS       +++ F + G + +A +++D+++ R RGFGFVT+ S + VD   +
Sbjct:   30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ-GTHELDGKKV-------------DPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 177          
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: ELV1A_XENLA (ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-A PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.286e-11
Identity = 52/217 (23.96%), Postives = 89/217 (41.01%), Query Frame = 3
Query:  291 DQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTG-----------RSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARHKGVN 908
            D  +D+  D+ G        L V  LP ++   +L  LF + G VE  ++I DKV G            S G+GFV   + ++ E A    NG  L+ + ++V+                              +Y+  L   +    +E +F   G ++ ++V+ D+ +G SRG  F+ +    E + AI S NG    G +  ++V  A +   N
Sbjct:    7 DHMDDVCRDDIGRT-----NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIKDA-----------------NLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFAANPNQN 201          
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.286e-11
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 3
Query:  657 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 884
            +++VG LS+  ++ ALE +F + G++ E  VV DRE+ RSRGFGFVT+ + ++  +A+ ++NG  + GR IRV  A
Sbjct:    7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.286e-11
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 3
Query:  657 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 884
            +++VG LS+  ++ ALE +F + G++ E  VV DRE+ RSRGFGFVT+ + ++  +A+ ++NG  + GR IRV  A
Sbjct:    7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.286e-11
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 3
Query:  657 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 884
            +++VG LS+  ++ ALE +F + G++ E  VV DRE+ RSRGFGFVT+ + ++  +A+ ++NG  + GR IRV  A
Sbjct:    7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.017e-11
Identity = 34/76 (44.74%), Postives = 52/76 (68.42%), Query Frame = 3
Query:  657 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 884
            +++VG L++   + +LE +F + G+V E  VV DRES RSRGFGFVT+ + E+  +A+ ++NG  + GR IRV  A
Sbjct:    7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82          
The following BLAST results are available for this feature:
BLAST of DY262963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
PABP_LODEL5.286e-1125.37Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_EMENI5.286e-1125.68Polyadenylate-binding protein, cytoplasmic and nuc... [more]
NUCL_XENLA5.286e-1125.70Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3[more]
MSIR6_DROME5.286e-1127.16RNA-binding protein Musashi homolog Rbp6 OS=Drosop... [more]
ELV1A_XENLA5.286e-1123.96ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-... [more]
CIRBP_RAT5.286e-1143.42Cold-inducible RNA-binding protein OS=Rattus norve... [more]
CIRBP_MOUSE5.286e-1143.42Cold-inducible RNA-binding protein OS=Mus musculus... [more]
CIRBP_CRIGR5.286e-1143.42Cold-inducible RNA-binding protein OS=Cricetulus g... [more]
CIRBP_XENTR9.017e-1144.74Cold-inducible RNA-binding protein OS=Xenopus trop... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10BG09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262963 ID=DY262963; Name=DY262963; organism=Citrus clementina; type=EST; length=1246bp
CAAAACTTTATCTTCTTCATTTTCGAAGCTTTCAAAGAAACTCAAAAACC
CTTGAGCCAGTAGCCATGTCTACGACGTCAGCTTCTTCGCTGGTGCTCCC
ATCTCTCAGTCCCAAAACCCTAGCCTTCTACAACTCAAAACCCACTTCAT
TTTCTCTCTTATCTTCCTCCTCTTCTCACAAACTTCTAGCGAAGCCCATC
TCGATATCCTCTTCTTTCATCCATTCTTTTCAACCCTTGCCCTCTTCCCC
CTCTCGTTTCGTCAGAAACGTAGCCGTTTCGTCCGAGTTTGACCAGGAAG
AGGACCTTTTGAGCGATGAAGACGGTTCGAATTTCTCCCCCGACTTGAAA
CTTTTTGTGGGTAACCTTCCTTTTAGCGTTGACAGTGCTCAGCTTGCTGG
CTTGTTTGAAACCGCTGGAAATGTTGAGATGGTTGAGGTAATATATGACA
AGGTCACTGGGAGAAGCAGAGGATTTGGTTTTGTGACCATGTCAAGTGTT
GAGGAAGTTGAAGCAGCTGCTCAGCAGTTCAATGGCTATGAACTCGAGGG
CCGACCCCTGAGGGTGAACTCTGGACCTCCTCCTCCTAGGAGGGAAGAAT
TCTCTCCCAGAGGGCCCAGAGGAGGTGGTGCTGGTGCGCCTTCTAGTGGT
GGCAACCGTGTTTATGTTGGTAACCTTTCATGGGGTGTTGATGATTTAGC
TCTTGAGACTTTGTTTCGTGAGCAAGGGAAGGTTTTGGAAGCCAAAGTGG
TATATGACAGGGAGAGTGGTAGATCGCGGGGTTTCGGGTTTGTGACTTAC
AGTTCTGCTGAAGAGGTTGACAATGCAATTGATTCCTTGAATGGTGTAGA
TTTGGCCGGTAGAGCAATTCGAGTCTCGGTGGCTGAAGCAAGGCACAAAG
GCGTCAATTTTGAGCTGTGGCAGAACTAGTTTTCAGTTGTTTTGATTTTA
TCGTTAGTTATTTGTGTTGTTATAAGGGTGCTTAACAGTGCTATCAAAAT
CTCGGCTTTCAGAAAAATTCTGGATTAATTGTTTTTGCTAATGCAAAAGG
ATTGGTTGCTTGGTTAAAATTTCAAATTATCATCAGAAACCAAGAAATTT
TGGAAGCTCCTTTTTCCAAAAAAGGATCTTTTGCATTTGGGCATTTTTGG
AAATTTTCTCTTTCTGTGTAACCTTGGCCAAAAAAAAAGGGGAACCTTGG
GATTTTGGCGTGGTCACCTTAAATTTTTCTCTTCCCTGGTTTTTGT
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