DY262963
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: PABP_LODEL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Lodderomyces elongisporus GN=PAB1 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 5.286e-11 Identity = 52/205 (25.37%), Postives = 94/205 (45.85%), Query Frame = 3 Query: 282 SEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXN-RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 893 S+ D+E L +E +N++ ++V N+ + + LF G + + + D G+S+GFGFV E A ++ N E+ G+ + V ++V NL +D LE F+ G + +KV+ D ++G+S+GFGFV +S+ EE AI +N + G+ + V++A+ + Sbjct: 232 SKKDRESKL--EEMKANYT---NIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKD-AEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVD-DAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRK 429
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 5.286e-11 Identity = 47/183 (25.68%), Postives = 82/183 (44.81%), Query Frame = 3 Query: 351 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARHK 899 +F+ NL ++D+ L F GN+ +V D+ G S+G+GFV + E A + NG L + + V +Y+ N+ V+D LF + G++ A + D E G+SRGFGFV +S+ E A++ +N ++ + + V A+ +H+ Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANF---------TNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHE 303
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: NUCL_XENLA (Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 5.286e-11 Identity = 46/179 (25.70%), Postives = 83/179 (46.37%), Query Frame = 3 Query: 351 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAE 887 LFV N+P+S +L +FE A ++ I G ++G +V S+ +E A ++ G E+EGR + V+ + V NLS+ + +L +F + + + GR++GF F+ +SSAE+ +A+DS N ++ GR+IR+ ++ Sbjct: 327 LFVKNIPYSTTVEELQEIFENAKDIR----IPTGKDGSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFVDFTGEKSQNSGNKKGPEGDSKV---------LVVNNLSYSATEDSLREVFEKA-----TSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQ 487
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=1 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 5.286e-11 Identity = 44/162 (27.16%), Postives = 73/162 (45.06%), Query Frame = 3 Query: 348 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAID 833 K+F+G L + L F G++ V+ D T RSRGFGFVT S V+ Q +EL+G+ + +++VG LS +++ F + G + +A +++D+++ R RGFGFVT+ S + VD + Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ-GTHELDGKKV-------------DPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCE 177
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: ELV1A_XENLA (ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-A PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 5.286e-11 Identity = 52/217 (23.96%), Postives = 89/217 (41.01%), Query Frame = 3 Query: 291 DQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTG-----------RSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARHKGVN 908 D +D+ D+ G L V LP ++ +L LF + G VE ++I DKV G S G+GFV + ++ E A NG L+ + ++V+ +Y+ L + +E +F G ++ ++V+ D+ +G SRG F+ + E + AI S NG G + ++V A + N Sbjct: 7 DHMDDVCRDDIGRT-----NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIKDA-----------------NLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFAANPNQN 201
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 5.286e-11 Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 3 Query: 657 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 884 +++VG LS+ ++ ALE +F + G++ E VV DRE+ RSRGFGFVT+ + ++ +A+ ++NG + GR IRV A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 5.286e-11 Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 3 Query: 657 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 884 +++VG LS+ ++ ALE +F + G++ E VV DRE+ RSRGFGFVT+ + ++ +A+ ++NG + GR IRV A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 5.286e-11 Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 3 Query: 657 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 884 +++VG LS+ ++ ALE +F + G++ E VV DRE+ RSRGFGFVT+ + ++ +A+ ++NG + GR IRV A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 9.017e-11 Identity = 34/76 (44.74%), Postives = 52/76 (68.42%), Query Frame = 3 Query: 657 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 884 +++VG L++ + +LE +F + G+V E VV DRES RSRGFGFVT+ + E+ +A+ ++NG + GR IRV A Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82 The following BLAST results are available for this feature:
BLAST of DY262963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 129
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Sequences
The
following sequences are available for this feature:
EST sequence >DY262963 ID=DY262963; Name=DY262963; organism=Citrus clementina; type=EST; length=1246bpback to top |