DY262963 | Citrus Genome Database

Overview


Name	DY262963
Unique Name	DY262963
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	1246

Libraries


Library Name	Type
CitNFL	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.200e-16
Identity = 58/195 (29.74%), Postives = 90/195 (46.15%), Query Frame = 3

Query:  318 EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXN-RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARHK 899
            E G+       +++ N    +D  +L  +F   GN   V+V+ D  +GRSRGFGFV   + EE + A  + NG E+ GR + V                                +YV NL  G+DD  L   F   G +   KV+   E G S+GFGFV +SS EE   A+  +NG  ++ + + V++A+ + +
Sbjct:  182 EYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373

HSP 2 Score: 83.1889 bits (204), Expect = 3.538e-15
Identity = 57/181 (31.49%), Postives = 81/181 (44.75%), Query Frame = 3

Query:  351 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 893
            +F+ NL  S+D+  L   F   G++   +V+ D+    SRG+GFV   + E    A Q  NG  L  R + V                               VY+ N    +DD  L+ +F   G  L  KV+ D  SGRSRGFGFV Y + EE   A+  +NG ++ GR + V  A+ R
Sbjct:  101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEF---------TNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKR 269

HSP 3 Score: 72.0182 bits (175), Expect = 8.155e-12
Identity = 51/187 (27.27%), Postives = 80/187 (42.78%), Query Frame = 3

Query:  339 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARHK 899
            P   L++G+L   V  A L   F  AG +  + V  D  T RS G+ ++      + E A    N   ++GRP+R+                               V++ NL   +D+ AL   F   G +L  KVV D     SRG+GFV + + E  + AI ++NG+ L  R + V   ++R +
Sbjct:    9 PLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRI---------------MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRE 178

[Close]

BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 4.179e-16
Identity = 59/185 (31.89%), Postives = 88/185 (47.57%), Query Frame = 3

Query:  342 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEA-KVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 893
            D  ++VG L   V  + L  L   AG V  V +  D+VT   +GFGFV     E+ + A +  N  +L G+P++VN                              ++VGNL   VD+  L   F   G +L+  K++ D +SG S+GF F+ ++S E  D A++++NG  L  RAI VS A  R
Sbjct:   12 DATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGA----------------NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKR 180

[Close]

BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.179e-16
Identity = 39/79 (49.37%), Postives = 58/79 (73.42%), Query Frame = 3

Query:  657 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 893
            R +VG L W  DD +L+  F + G V+++K++ DRE+GRSRGFGFVT++S E +  AI+++NG DL GR I V+ A++R
Sbjct:    7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSR 85

[Close]

BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.309e-16
Identity = 58/195 (29.74%), Postives = 92/195 (47.18%), Query Frame = 3

Query:  318 EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXN-RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARHK 899
            E G+       +++ N    +D  +L  LF   G    V+V+ D+ +G+S+GFGFV+    E+ + A  + NG EL G+ + V                                +YV NL  G+DD  L   F   G +  AKV+   E GRS+GFGFV +SS EE   A+  +NG  +A + + V++A+ + +
Sbjct:  182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373

HSP 2 Score: 84.7297 bits (208), Expect = 1.216e-15
Identity = 56/181 (30.94%), Postives = 86/181 (47.51%), Query Frame = 3

Query:  351 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 893
            +F+ NL  S+D+  L   F   GN+   +V+ D+    S+G+GFV   + E  E A ++ NG  L  R + V                               VY+ N    +DD  L+ LF + G  L  KV+ D ESG+S+GFGFV++   E+   A+D +NG +L G+ I V  A+ +
Sbjct:  101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF---------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269

[Close]

BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 9.309e-16
Identity = 58/195 (29.74%), Postives = 92/195 (47.18%), Query Frame = 3

Query:  318 EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXN-RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARHK 899
            E G+       +++ N    +D  +L  LF   G    V+V+ D+ +G+S+GFGFV+    E+ + A  + NG EL G+ + V                                +YV NL  G+DD  L   F   G +  AKV+   E GRS+GFGFV +SS EE   A+  +NG  +A + + V++A+ + +
Sbjct:  182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373

HSP 2 Score: 84.7297 bits (208), Expect = 1.216e-15
Identity = 56/181 (30.94%), Postives = 86/181 (47.51%), Query Frame = 3

Query:  351 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 893
            +F+ NL  S+D+  L   F   GN+   +V+ D+    S+G+GFV   + E  E A ++ NG  L  R + V                               VY+ N    +DD  L+ LF + G  L  KV+ D ESG+S+GFGFV++   E+   A+D +NG +L G+ I V  A+ +
Sbjct:  101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF---------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269

[Close]

BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.309e-16
Identity = 58/195 (29.74%), Postives = 92/195 (47.18%), Query Frame = 3

Query:  318 EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXN-RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARHK 899
            E G+       +++ N    +D  +L  LF   G    V+V+ D+ +G+S+GFGFV+    E+ + A  + NG EL G+ + V                                +YV NL  G+DD  L   F   G +  AKV+   E GRS+GFGFV +SS EE   A+  +NG  +A + + V++A+ + +
Sbjct:  182 ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373

HSP 2 Score: 84.7297 bits (208), Expect = 1.216e-15
Identity = 56/181 (30.94%), Postives = 86/181 (47.51%), Query Frame = 3

Query:  351 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 893
            +F+ NL  S+D+  L   F   GN+   +V+ D+    S+G+GFV   + E  E A ++ NG  L  R + V                               VY+ N    +DD  L+ LF + G  L  KV+ D ESG+S+GFGFV++   E+   A+D +NG +L G+ I V  A+ +
Sbjct:  101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF---------TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269

[Close]

BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.216e-15
Identity = 60/203 (29.56%), Postives = 87/203 (42.86%), Query Frame = 3

Query:  267 NVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRV 875
            NVA  +   +     S    +       L+VG L  SV  A L  LF + G V  + V  D VT RS G+ +V  ++  + E A +  N   ++GRP R+                               V++ NL   +D+ AL   F   G +L  KV  D E G S+G+GFV Y +AE   NAI  +NG+ L  + + V
Sbjct:   29 NVAADTTAGEASQTTSSTTPTAQPHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGRPCRI---------------MWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFV 215

HSP 2 Score: 78.5666 bits (192), Expect = 8.713e-14
Identity = 50/183 (27.32%), Postives = 83/183 (45.36%), Query Frame = 3

Query:  351 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARHK 899
            +F+ NL  ++D+  L   F   GN+   +V  D+  G S+G+GFV   + E  + A +  NG  L  + + V                               VYV N+     +     LF + G++  A +  D ESG+SRGFGFV ++S +    A+++LN  D  G+ + V  A+ +H+
Sbjct:  145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANF---------TNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHE 317

[Close]

BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.216e-15
Identity = 56/181 (30.94%), Postives = 86/181 (47.51%), Query Frame = 3

Query:  351 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 893
            +F+ NL  S+D+  L   F   GN+   +V+ D+    S+G+GFV   + E  E A ++ NG  L  R + V                               VY+ N    +DD  L+ LF + G  L  KV+ D ESG+S+GFGFV++   E+   A+D +NG +L G+ I V  A+ +
Sbjct:  101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF---------TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269

HSP 2 Score: 84.7297 bits (208), Expect = 1.216e-15
Identity = 58/195 (29.74%), Postives = 92/195 (47.18%), Query Frame = 3

Query:  318 EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXN-RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARHK 899
            E G+       +++ N    +D  +L  LF   G    V+V+ D+ +G+S+GFGFV+    E+ + A  + NG EL G+ + V                                +YV NL  G+DD  L   F   G +  AKV+   E GRS+GFGFV +SS EE   A+  +NG  +A + + V++A+ + +
Sbjct:  182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373

[Close]

BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.216e-15
Identity = 56/181 (30.94%), Postives = 86/181 (47.51%), Query Frame = 3

Query:  351 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 893
            +F+ NL  S+D+  L   F   GN+   +V+ D+    S+G+GFV   + E  E A ++ NG  L  R + V                               VY+ N    +DD  L+ LF + G  L  KV+ D ESG+S+GFGFV++   E+   A+D +NG +L G+ I V  A+ +
Sbjct:  101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEF---------TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269

HSP 2 Score: 84.7297 bits (208), Expect = 1.216e-15
Identity = 58/195 (29.74%), Postives = 92/195 (47.18%), Query Frame = 3

Query:  318 EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXN-RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARHK 899
            E G+       +++ N    +D  +L  LF   G    V+V+ D+ +G+S+GFGFV+    E+ + A  + NG EL G+ + V                                +YV NL  G+DD  L   F   G +  AKV+   E GRS+GFGFV +SS EE   A+  +NG  +A + + V++A+ + +
Sbjct:  182 ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373

[Close]

BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.588e-15
Identity = 56/184 (30.43%), Postives = 89/184 (48.37%), Query Frame = 3

Query:  351 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXN-RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARHK 899
            +++ N    +D  +L  LF   G    V+V+ D+ +G+S+GFGFV+    E+ + A  + NG EL G+ + V                                +YV NL  G+DD  L   F   G +  AKV+   E GRS+GFGFV +SS EE   A+  +NG  +A + + V++A+ + +
Sbjct:  193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373

HSP 2 Score: 81.6481 bits (200), Expect = 1.029e-14
Identity = 56/181 (30.94%), Postives = 85/181 (46.96%), Query Frame = 3

Query:  351 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 893
            +FV NL  S+++  L       GN+    V+ D+    S+G+GFV   + E  E A ++ NG  L GR + V                               VY+ N    +DD  L+ LF + G  L  KV+ D ESG+S+GFGFV++   E+   A+D +NG +L G+ I V  A+ +
Sbjct:  101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFP---------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269

The following BLAST results are available for this feature:

BLAST of DY262963 vs. ExPASy Swiss-Prot

BLAST of DY262963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129


Match Name	E-value	Identity	Description
EPABB_XENLA	3.200e-16	29.74	Embryonic polyadenylate-binding protein B OS=Xenop...	[more]
SF3B4_CAEEL	4.179e-16	31.89	Splicing factor 3B subunit 4 OS=Caenorhabditis ele...	[more]
GRP_HORVU	4.179e-16	49.37	Glycine-rich RNA-binding protein blt801 OS=Hordeum...	[more]
PABP1_PONAB	9.309e-16	29.74	Polyadenylate-binding protein 1 OS=Pongo abelii GN...	[more]
PABP1_HUMAN	9.309e-16	29.74	Polyadenylate-binding protein 1 OS=Homo sapiens GN...	[more]
PABP1_BOVIN	9.309e-16	29.74	Polyadenylate-binding protein 1 OS=Bos taurus GN=P...	[more]
PABP_COCIM	1.216e-15	29.56	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP1_RAT	1.216e-15	30.94	Polyadenylate-binding protein 1 OS=Rattus norvegic...	[more]
PABP1_MOUSE	1.216e-15	30.94	Polyadenylate-binding protein 1 OS=Mus musculus GN...	[more]
PABP3_HUMAN	1.588e-15	30.43	Polyadenylate-binding protein 3 OS=Homo sapiens GN...	[more]

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Properties


Property Name	Value
Genbank description	IC0AAA10BG09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY262963 ID=DY262963; Name=DY262963; organism=Citrus clementina; type=EST; length=1246bp
CAAAACTTTATCTTCTTCATTTTCGAAGCTTTCAAAGAAACTCAAAAACC
CTTGAGCCAGTAGCCATGTCTACGACGTCAGCTTCTTCGCTGGTGCTCCC
ATCTCTCAGTCCCAAAACCCTAGCCTTCTACAACTCAAAACCCACTTCAT
TTTCTCTCTTATCTTCCTCCTCTTCTCACAAACTTCTAGCGAAGCCCATC
TCGATATCCTCTTCTTTCATCCATTCTTTTCAACCCTTGCCCTCTTCCCC
CTCTCGTTTCGTCAGAAACGTAGCCGTTTCGTCCGAGTTTGACCAGGAAG
AGGACCTTTTGAGCGATGAAGACGGTTCGAATTTCTCCCCCGACTTGAAA
CTTTTTGTGGGTAACCTTCCTTTTAGCGTTGACAGTGCTCAGCTTGCTGG
CTTGTTTGAAACCGCTGGAAATGTTGAGATGGTTGAGGTAATATATGACA
AGGTCACTGGGAGAAGCAGAGGATTTGGTTTTGTGACCATGTCAAGTGTT
GAGGAAGTTGAAGCAGCTGCTCAGCAGTTCAATGGCTATGAACTCGAGGG
CCGACCCCTGAGGGTGAACTCTGGACCTCCTCCTCCTAGGAGGGAAGAAT
TCTCTCCCAGAGGGCCCAGAGGAGGTGGTGCTGGTGCGCCTTCTAGTGGT
GGCAACCGTGTTTATGTTGGTAACCTTTCATGGGGTGTTGATGATTTAGC
TCTTGAGACTTTGTTTCGTGAGCAAGGGAAGGTTTTGGAAGCCAAAGTGG
TATATGACAGGGAGAGTGGTAGATCGCGGGGTTTCGGGTTTGTGACTTAC
AGTTCTGCTGAAGAGGTTGACAATGCAATTGATTCCTTGAATGGTGTAGA
TTTGGCCGGTAGAGCAATTCGAGTCTCGGTGGCTGAAGCAAGGCACAAAG
GCGTCAATTTTGAGCTGTGGCAGAACTAGTTTTCAGTTGTTTTGATTTTA
TCGTTAGTTATTTGTGTTGTTATAAGGGTGCTTAACAGTGCTATCAAAAT
CTCGGCTTTCAGAAAAATTCTGGATTAATTGTTTTTGCTAATGCAAAAGG
ATTGGTTGCTTGGTTAAAATTTCAAATTATCATCAGAAACCAAGAAATTT
TGGAAGCTCCTTTTTCCAAAAAAGGATCTTTTGCATTTGGGCATTTTTGG
AAATTTTCTCTTTCTGTGTAACCTTGGCCAAAAAAAAAGGGGAACCTTGG
GATTTTGGCGTGGTCACCTTAAATTTTTCTCTTCCCTGGTTTTTGT