DY262963

Overview
NameDY262963
Unique NameDY262963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1246
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: SXL_MEGSC (Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.138e-13
Identity = 57/213 (26.76%), Postives = 90/213 (42.25%), Query Frame = 3
Query:  267 NVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAG--RAIRVSVAEARHK 899
            N  + S  +      S   G+N S    L V  LP  +   +L  LF T G +    ++ D  TG S G+GFV   S  +   A    NG  +  + ++V+                              +YV NLS  + D  LET+F + G++++  ++ D+ +G  RG  F+ ++  EE   AI +LN V   G  + + V VAE   K
Sbjct:   53 NCGLGSVGNMANSTNSLNSGTNNS-GTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFARPGGEQLRD-----------------TNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISALNNVIPEGGTQPLTVRVAEEHGK 247          
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.138e-13
Identity = 54/195 (27.69%), Postives = 90/195 (46.15%), Query Frame = 3
Query:  318 EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXN-RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARHK 899
            E G+       +++ N    ++  +L  +F   G    V+V+ D   G+S+GFGFV+    E+ + A  + NG ++ G+ + V                                +YV NL  G+DD  L   F   G +  AKV+   E GRS+GFGFV +SS EE   A+  +NG  +A + + V++A+ + +
Sbjct:  182 ELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373          

HSP 2 Score: 76.6406 bits (187), Expect = 3.311e-13
Identity = 54/185 (29.19%), Postives = 83/185 (44.86%), Query Frame = 3
Query:  339 PDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 893
            P   L+VG+L   V  A L   F  AG +  + V  D +T RS G+ +V      + E A    N   ++GRP+R+                               +++ NL   +D+ AL   F   G +L  KVV D E+G S+G+GFV + + E  + AID +NG+ L  R + V   ++R
Sbjct:    9 PMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRI---------------MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176          
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.138e-13
Identity = 48/193 (24.87%), Postives = 86/193 (44.56%), Query Frame = 3
Query:  318 EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARH 896
            + G+       L    LP ++   +L  LF + G +E  +++ DK+TG+S G+GFV     ++ E A    NG  L+ + ++V+                              +YV  L   +    LE LF + G+++ ++++ D+ +G SRG GF+ +    E + AI  LNG    G    ++V  A +
Sbjct:   30 DSGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA-----------------NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANN 205          
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.138e-13
Identity = 48/186 (25.81%), Postives = 83/186 (44.62%), Query Frame = 3
Query:  351 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARHKGVN 908
            L V  LP ++   +L  LF + G VE  ++I DKV G S G+GFV   + ++ E A    NG  L+ + ++V+                              +Y+  L   +    +E +F   G+++ ++V+ D+ +G SRG  F+ +    E + AI S NG    G +  ++V  A +   N
Sbjct:   22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDA-----------------NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQN 190          
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: PUF60_RAT (Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.941e-13
Identity = 43/179 (24.02%), Postives = 84/179 (46.93%), Query Frame = 3
Query:  348 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 884
            +++VG++ + +    +   F   G ++ +++ +D VT + +GF FV     E  + A +Q N   L GR ++V                             NR+YV ++   + D  ++++F   GK+    +  D  +G+ +G+GF+ Y  A+   +A+ S+N  DL G+ +RV  A
Sbjct:  135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAF------NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307          
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: PUF60_PONAB (Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.941e-13
Identity = 43/179 (24.02%), Postives = 84/179 (46.93%), Query Frame = 3
Query:  348 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 884
            +++VG++ + +    +   F   G ++ +++ +D VT + +GF FV     E  + A +Q N   L GR ++V                             NR+YV ++   + D  ++++F   GK+    +  D  +G+ +G+GF+ Y  A+   +A+ S+N  DL G+ +RV  A
Sbjct:  129 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAF------NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 301          
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: PUF60_MOUSE (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.941e-13
Identity = 43/179 (24.02%), Postives = 84/179 (46.93%), Query Frame = 3
Query:  348 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 884
            +++VG++ + +    +   F   G ++ +++ +D VT + +GF FV     E  + A +Q N   L GR ++V                             NR+YV ++   + D  ++++F   GK+    +  D  +G+ +G+GF+ Y  A+   +A+ S+N  DL G+ +RV  A
Sbjct:  135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAF------NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307          
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: PUF60_HUMAN (Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.941e-13
Identity = 43/179 (24.02%), Postives = 84/179 (46.93%), Query Frame = 3
Query:  348 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 884
            +++VG++ + +    +   F   G ++ +++ +D VT + +GF FV     E  + A +Q N   L GR ++V                             NR+YV ++   + D  ++++F   GK+    +  D  +G+ +G+GF+ Y  A+   +A+ S+N  DL G+ +RV  A
Sbjct:  130 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAF------NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 302          
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: PUF60_BOVIN (Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.941e-13
Identity = 43/179 (24.02%), Postives = 84/179 (46.93%), Query Frame = 3
Query:  348 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 884
            +++VG++ + +    +   F   G ++ +++ +D VT + +GF FV     E  + A +Q N   L GR ++V                             NR+YV ++   + D  ++++F   GK+    +  D  +G+ +G+GF+ Y  A+   +A+ S+N  DL G+ +RV  A
Sbjct:  101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAF------NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 273          
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.941e-13
Identity = 53/184 (28.80%), Postives = 86/184 (46.74%), Query Frame = 3
Query:  351 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXN-RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARHK 899
            +FV N+   +D  +L  LF   G  E V+VI D  +G+S+GFGFV   + E  + A    +G  ++G+ L V                                +Y+ NL   ++D  L+  F   G +  AKV+   E G+ +GFG V +SS EE   A+D +NG  +  + + V++ +AR +
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMM--EVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARRR 381          

HSP 2 Score: 70.8626 bits (172), Expect = 1.817e-11
Identity = 51/181 (28.18%), Postives = 78/181 (43.09%), Query Frame = 3
Query:  351 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 893
            +F+ NL  S+D+  L  LF   GN+   +V+ D     S+G+ +V   S+     A    NG  L  R + V                               V+V N+   +DD  L+ LF E G     KV+ D  SG+S+GFGFV Y + E    A+  L+G  + G+ + V  A+ +
Sbjct:  108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATF--------TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277          
The following BLAST results are available for this feature:
BLAST of DY262963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
SXL_MEGSC1.138e-1326.76Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE... [more]
PABPA_XENLA1.138e-1327.69Polyadenylate-binding protein 1-A OS=Xenopus laevi... [more]
ELAV2_RAT1.138e-1324.87ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2... [more]
ELAV1_HUMAN1.138e-1325.81ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1... [more]
PUF60_RAT1.941e-1324.02Poly(U)-binding-splicing factor PUF60 OS=Rattus no... [more]
PUF60_PONAB1.941e-1324.02Poly(U)-binding-splicing factor PUF60 OS=Pongo abe... [more]
PUF60_MOUSE1.941e-1324.02Poly(U)-binding-splicing factor PUF60 OS=Mus muscu... [more]
PUF60_HUMAN1.941e-1324.02Poly(U)-binding-splicing factor PUF60 OS=Homo sapi... [more]
PUF60_BOVIN1.941e-1324.02Poly(U)-binding-splicing factor PUF60 OS=Bos tauru... [more]
PABP5_PONPY1.941e-1328.80Polyadenylate-binding protein 5 OS=Pongo pygmaeus ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10BG09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262963 ID=DY262963; Name=DY262963; organism=Citrus clementina; type=EST; length=1246bp
CAAAACTTTATCTTCTTCATTTTCGAAGCTTTCAAAGAAACTCAAAAACC
CTTGAGCCAGTAGCCATGTCTACGACGTCAGCTTCTTCGCTGGTGCTCCC
ATCTCTCAGTCCCAAAACCCTAGCCTTCTACAACTCAAAACCCACTTCAT
TTTCTCTCTTATCTTCCTCCTCTTCTCACAAACTTCTAGCGAAGCCCATC
TCGATATCCTCTTCTTTCATCCATTCTTTTCAACCCTTGCCCTCTTCCCC
CTCTCGTTTCGTCAGAAACGTAGCCGTTTCGTCCGAGTTTGACCAGGAAG
AGGACCTTTTGAGCGATGAAGACGGTTCGAATTTCTCCCCCGACTTGAAA
CTTTTTGTGGGTAACCTTCCTTTTAGCGTTGACAGTGCTCAGCTTGCTGG
CTTGTTTGAAACCGCTGGAAATGTTGAGATGGTTGAGGTAATATATGACA
AGGTCACTGGGAGAAGCAGAGGATTTGGTTTTGTGACCATGTCAAGTGTT
GAGGAAGTTGAAGCAGCTGCTCAGCAGTTCAATGGCTATGAACTCGAGGG
CCGACCCCTGAGGGTGAACTCTGGACCTCCTCCTCCTAGGAGGGAAGAAT
TCTCTCCCAGAGGGCCCAGAGGAGGTGGTGCTGGTGCGCCTTCTAGTGGT
GGCAACCGTGTTTATGTTGGTAACCTTTCATGGGGTGTTGATGATTTAGC
TCTTGAGACTTTGTTTCGTGAGCAAGGGAAGGTTTTGGAAGCCAAAGTGG
TATATGACAGGGAGAGTGGTAGATCGCGGGGTTTCGGGTTTGTGACTTAC
AGTTCTGCTGAAGAGGTTGACAATGCAATTGATTCCTTGAATGGTGTAGA
TTTGGCCGGTAGAGCAATTCGAGTCTCGGTGGCTGAAGCAAGGCACAAAG
GCGTCAATTTTGAGCTGTGGCAGAACTAGTTTTCAGTTGTTTTGATTTTA
TCGTTAGTTATTTGTGTTGTTATAAGGGTGCTTAACAGTGCTATCAAAAT
CTCGGCTTTCAGAAAAATTCTGGATTAATTGTTTTTGCTAATGCAAAAGG
ATTGGTTGCTTGGTTAAAATTTCAAATTATCATCAGAAACCAAGAAATTT
TGGAAGCTCCTTTTTCCAAAAAAGGATCTTTTGCATTTGGGCATTTTTGG
AAATTTTCTCTTTCTGTGTAACCTTGGCCAAAAAAAAAGGGGAACCTTGG
GATTTTGGCGTGGTCACCTTAAATTTTTCTCTTCCCTGGTTTTTGT
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