DY262963

Overview
NameDY262963
Unique NameDY262963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1246
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: GBP2_YEAST (Single-strand telomeric DNA-binding protein GBP2 OS=Saccharomyces cerevisiae GN=GBP2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.324e-13
Identity = 59/193 (30.57%), Postives = 87/193 (45.08%), Query Frame = 3
Query:  297 EEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRV 875
            E DL    D +  + +  +FV NL F      L  LF T G V   ++I  K  G  RG G V  +  E V+ A  +F+G     R L V                               V++ NL + ++  +L+ +F+E G VL A V  D  +G SRGFG V Y + +E+  AID+ NG+++ GR + V
Sbjct:  106 ERDLERQFDATKRNFENSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK--GHHRGMGTVEFTKNESVQDAISKFDGALFMDRKLMVRQDNPPPEAAKEFSKKATREEIDNGF----EVFIINLPYSMNWQSLKDMFKECGHVLRADVELDF-NGFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGRVLEV 291          
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 4.324e-13
Identity = 52/193 (26.94%), Postives = 89/193 (46.11%), Query Frame = 3
Query:  327 SNFSPDLK--LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVT-GRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARH 896
            SN + D K  L V  LP ++   +L  LF + G +E  +++ DK+T G+S G+GFV     ++ E A    NG  L+ + ++V+                              +YV  L   +    LE LF + G+++ ++++ D+ +G SRG GF+ +    E + AI  LNG    G    ++V  A +
Sbjct:   58 SNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA-----------------NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANN 233          
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: ROA1_RAT (Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus GN=Hnrnpa1 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 5.648e-13
Identity = 49/161 (30.43%), Postives = 73/161 (45.34%), Query Frame = 3
Query:  348 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAI 830
            KLF+G L F      L   FE  G +    V+ D  T RSRGFGFVT ++VEEV+AA        +  RP +V+                             +++VG +    ++  L   F + GK+   +++ DR SG+ RGF FVT+   + VD  +
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--------MNARPHKVD----GRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: ROA1_PANTR (Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes GN=HNRNPA1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.648e-13
Identity = 49/161 (30.43%), Postives = 73/161 (45.34%), Query Frame = 3
Query:  348 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAI 830
            KLF+G L F      L   FE  G +    V+ D  T RSRGFGFVT ++VEEV+AA        +  RP +V+                             +++VG +    ++  L   F + GK+   +++ DR SG+ RGF FVT+   + VD  +
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--------MNARPHKVD----GRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: ROA1_MOUSE (Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus GN=Hnrnpa1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 5.648e-13
Identity = 49/161 (30.43%), Postives = 73/161 (45.34%), Query Frame = 3
Query:  348 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAI 830
            KLF+G L F      L   FE  G +    V+ D  T RSRGFGFVT ++VEEV+AA        +  RP +V+                             +++VG +    ++  L   F + GK+   +++ DR SG+ RGF FVT+   + VD  +
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--------MNARPHKVD----GRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: ROA1_HUMAN (Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens GN=HNRNPA1 PE=1 SV=5)

HSP 1 Score: 75.8702 bits (185), Expect = 5.648e-13
Identity = 49/161 (30.43%), Postives = 73/161 (45.34%), Query Frame = 3
Query:  348 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAI 830
            KLF+G L F      L   FE  G +    V+ D  T RSRGFGFVT ++VEEV+AA        +  RP +V+                             +++VG +    ++  L   F + GK+   +++ DR SG+ RGF FVT+   + VD  +
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--------MNARPHKVD----GRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: ROA1_BOVIN (Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 5.648e-13
Identity = 49/161 (30.43%), Postives = 73/161 (45.34%), Query Frame = 3
Query:  348 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAI 830
            KLF+G L F      L   FE  G +    V+ D  T RSRGFGFVT ++VEEV+AA        +  RP +V+                             +++VG +    ++  L   F + GK+   +++ DR SG+ RGF FVT+   + VD  +
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--------MNARPHKVD----GRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: RA1L3_HUMAN (Putative heterogeneous nuclear ribonucleoprotein A1-like protein 3 OS=Homo sapiens GN=HNRPA1L3 PE=5 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.648e-13
Identity = 49/161 (30.43%), Postives = 73/161 (45.34%), Query Frame = 3
Query:  348 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAI 830
            KLF+G L F      L   FE  G +    V+ D  T RSRGFGFVT ++VEEV+AA        +  RP +V+                             +++VG +    ++  L   F + GK+   +++ DR SG+ RGF FVT+   + VD  +
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAA--------MNARPHKVD----GRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.648e-13
Identity = 47/198 (23.74%), Postives = 92/198 (46.46%), Query Frame = 3
Query:  306 LLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGR-SRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARH 896
            +L+  +G+       L V  LP ++   +   LF + G +E  +++ DK+TG+S G+GFV      + + A    NG +L+ + ++V+                              +YV +L   ++   +E LF + G+++ ++++ D+ +G  SRG GF+ +    E + AI  LNG    G +  ++V  A +
Sbjct:   22 ILNGTNGAADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA-----------------NLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKFANN 202          
BLAST of DY262963 vs. ExPASy Swiss-Prot
Match: RO32_XENLA (Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.376e-13
Identity = 50/161 (31.06%), Postives = 72/161 (44.72%), Query Frame = 3
Query:  348 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAI 830
            KLF+G L F      L   FE  G +    V+ D  T RSRGFGFVT S VEEV+A+        +  RP +V+                             +++VG +    ++  L   F   GK+   +V+ DR+SG+ RGF FVT+   + VD  +
Sbjct:   28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAS--------MSARPHKVD----GRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176          
The following BLAST results are available for this feature:
BLAST of DY262963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
GBP2_YEAST4.324e-1330.57Single-strand telomeric DNA-binding protein GBP2 O... [more]
ELAV2_XENLA4.324e-1326.94ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE... [more]
ROA1_RAT5.648e-1330.43Heterogeneous nuclear ribonucleoprotein A1 OS=Ratt... [more]
ROA1_PANTR5.648e-1330.43Heterogeneous nuclear ribonucleoprotein A1 OS=Pan ... [more]
ROA1_MOUSE5.648e-1330.43Heterogeneous nuclear ribonucleoprotein A1 OS=Mus ... [more]
ROA1_HUMAN5.648e-1330.43Heterogeneous nuclear ribonucleoprotein A1 OS=Homo... [more]
ROA1_BOVIN5.648e-1330.43Heterogeneous nuclear ribonucleoprotein A1 OS=Bos ... [more]
RA1L3_HUMAN5.648e-1330.43Putative heterogeneous nuclear ribonucleoprotein A... [more]
ELAV3_XENTR5.648e-1323.74ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl... [more]
RO32_XENLA7.376e-1331.06Heterogeneous nuclear ribonucleoprotein A3 homolog... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10BG09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY262963 ID=DY262963; Name=DY262963; organism=Citrus clementina; type=EST; length=1246bp
CAAAACTTTATCTTCTTCATTTTCGAAGCTTTCAAAGAAACTCAAAAACC
CTTGAGCCAGTAGCCATGTCTACGACGTCAGCTTCTTCGCTGGTGCTCCC
ATCTCTCAGTCCCAAAACCCTAGCCTTCTACAACTCAAAACCCACTTCAT
TTTCTCTCTTATCTTCCTCCTCTTCTCACAAACTTCTAGCGAAGCCCATC
TCGATATCCTCTTCTTTCATCCATTCTTTTCAACCCTTGCCCTCTTCCCC
CTCTCGTTTCGTCAGAAACGTAGCCGTTTCGTCCGAGTTTGACCAGGAAG
AGGACCTTTTGAGCGATGAAGACGGTTCGAATTTCTCCCCCGACTTGAAA
CTTTTTGTGGGTAACCTTCCTTTTAGCGTTGACAGTGCTCAGCTTGCTGG
CTTGTTTGAAACCGCTGGAAATGTTGAGATGGTTGAGGTAATATATGACA
AGGTCACTGGGAGAAGCAGAGGATTTGGTTTTGTGACCATGTCAAGTGTT
GAGGAAGTTGAAGCAGCTGCTCAGCAGTTCAATGGCTATGAACTCGAGGG
CCGACCCCTGAGGGTGAACTCTGGACCTCCTCCTCCTAGGAGGGAAGAAT
TCTCTCCCAGAGGGCCCAGAGGAGGTGGTGCTGGTGCGCCTTCTAGTGGT
GGCAACCGTGTTTATGTTGGTAACCTTTCATGGGGTGTTGATGATTTAGC
TCTTGAGACTTTGTTTCGTGAGCAAGGGAAGGTTTTGGAAGCCAAAGTGG
TATATGACAGGGAGAGTGGTAGATCGCGGGGTTTCGGGTTTGTGACTTAC
AGTTCTGCTGAAGAGGTTGACAATGCAATTGATTCCTTGAATGGTGTAGA
TTTGGCCGGTAGAGCAATTCGAGTCTCGGTGGCTGAAGCAAGGCACAAAG
GCGTCAATTTTGAGCTGTGGCAGAACTAGTTTTCAGTTGTTTTGATTTTA
TCGTTAGTTATTTGTGTTGTTATAAGGGTGCTTAACAGTGCTATCAAAAT
CTCGGCTTTCAGAAAAATTCTGGATTAATTGTTTTTGCTAATGCAAAAGG
ATTGGTTGCTTGGTTAAAATTTCAAATTATCATCAGAAACCAAGAAATTT
TGGAAGCTCCTTTTTCCAAAAAAGGATCTTTTGCATTTGGGCATTTTTGG
AAATTTTCTCTTTCTGTGTAACCTTGGCCAAAAAAAAAGGGGAACCTTGG
GATTTTGGCGTGGTCACCTTAAATTTTTCTCTTCCCTGGTTTTTGT
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