DY263017

Overview
NameDY263017
Unique NameDY263017
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1332
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY263017 vs. ExPASy Swiss-Prot
Match: RPOB1_ARCFU (DNA-directed RNA polymerase subunit B' OS=Archaeoglobus fulgidus GN=rpoB1 PE=4 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.929e-14
Identity = 70/252 (27.78%), Postives = 110/252 (43.65%), Query Frame = 2 
Query:  344 KFKVFVDGDWIGVCKDSLSFVSXXXXXXXXXXXPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGPNHILPRPELYIGQNAIVGWKGPLGIQQEDPWVMERASRGRGM 1078
            K +V+++G  +G   +     +             QV +      +EVRI  DAGR  RPL+VV++ GK       I+ ++    T + L+  G+IE +  EEEE+   A          E +   + TH ELD S ++G+  G IP+A H+ + R          Q++G P +N + R DT  H + +PQ P+  T                +   E   GQN +V      G   ED  +M + S  RG+
Sbjct:    3 KCRVYINGALVGFHDNGEELANKIRELRRKGRISNQVNVVYYPDSNEVRINTDAGRARRPLIVVKD-GKPLVTPEHIEKIKKGELTIEDLVRQGLIEYLDAEEEENAYVAV--------YEHELTPEHTHLELDPSLIVGICTGSIPYAEHNASPRNT-MGAAMIKQSLGIPYSNLAWRTDTRGHLMQHPQVPIVTT-----------DTQVEIKFDERPAGQNFVVAVLSYEGYNIEDALIMNKGSVERGL 233
The following BLAST results are available for this feature:
BLAST of DY263017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RPOB1_ARCFU1.929e-1427.78DNA-directed RNA polymerase subunit B' OS=Archaeog... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CD04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263017 ID=DY263017; Name=DY263017; organism=Citrus clementina; type=EST; length=1332bp
CTCAACGGGAGCGTGGTCACATCCTTTCAAGAGGACAGAAAGAATTTCTG
GCATAGTGGCGAATCTTGGACGAGCAAATCCATTGCAGACACTTGTTGAT
TTGAGGAGAACAAGACAGCAGGTTCAGTATACAGGGAAGGTGGGAGATGC
TAGATACCCGCATCCTTCTCACTGGGGTAAGATTTGCTTTCTCTCTACCC
CAGATGGTGAAAATTGTGGGCTGGTGAAAAATTTAGGTGTCACTGGACTG
GTTAGTACAAGCATATTGGAGCCCATATTTGAGCAGTTGTTTAATAGCGG
AATGGAAAAGCTGGCAGATGATGCTTCCTATTCACTGGGAGGAAAGTTTA
AAGTGTTTGTTGATGGAGATTGGATTGGAGTTTGTAAGGATTCCCTCTCA
TTTGTTTCTGAGTTAAGAAGGAAGCGTCGCAGGAAGGAGTTACCCACTCA
GGTGGAAATCAAAAGAGATGAACTACAAAGTGAAGTACGGATATTTATGG
ATGCTGGGAGGATTTTACGCCCTCTTTTGGTGGTTGAAAATATGGGCAAG
ATTAAATCCCTGGAGGGGAAAAATTACACCTTTCAAGCCCTTTTGGACCA
TGGAATAATTGAGCTTGTTGGAACTGAAGAAGAGGAAGATTGCTGTACTG
CATGGGGTATTAAATACCTCTTAAAGGACATTGAAGATAAAAAACCCATA
AAGTTCACTCACTGTGAACTTGATATGTCCTTCTTGCTTGGTTTGAGTTG
TGGGATTATCCCATTTGCGAACCATGACCATGCAAGGAGGGTTCTGTATC
AATCACAGAAGCATTCTTCCCAGGCTATAGGTTTTCCAACAACCAATCCC
AGCATCAGAGTTGATACTCTATCACACCAGCTTTTCTACCCTCAAAGGCC
CCTTTTTCGGACAATGATTTCAGATTGTCTTGGAAAACCAGGTTATGGGC
CTAATCATATACTGCCCAGGCCAGAGCTCTACATTGGGCAAAATGCGATT
GTGGGCTGGAAAGGTCCCTTGGGGATACAACAAGAGGACCCCTGGGTGAT
GGAACGTGCCTCTCGGGGGCGGGGTATGTTTTCATTTGGACCCTTTAAAA
TTACAAGGGGGAAGGTCCAAAAAAAAAAATGCGGGGGAAGAGGCGGGCTT
CTGAAAAAATGGGTGAATTTTGGAAAGAAATCAAAAAAAAAATGGGGCCC
GGGTTAAACCCCCCAAAAAAAAGAGAGGGGTTTTCCCTTTCTTTTGGGGG
GCACCATCCCCCCGCTGGGGGGGGGGGACCTACCGGGGGGATGGGAAAAA
AAATAAGGCCGGAAATTTATCTTGGGGGGGGG
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