DY263039

Overview
NameDY263039
Unique NameDY263039
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1261
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263039 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.615e-15
Identity = 38/82 (46.34%), Postives = 57/82 (69.51%), Query Frame = 3
Query:  657 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARHKG 902
            R +VG L+W   D  LE  F + G+V+++K++ DRE+GRSRGFGFVT+   + + +AID +NG +L GR I V+ A++R  G
Sbjct:    7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSRGGG 88          
BLAST of DY263039 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.615e-15
Identity = 53/184 (28.80%), Postives = 86/184 (46.74%), Query Frame = 3
Query:  351 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARHKG 902
            +FVG L ++VD   L   FE  G +    VI D  +GRS+G+G+V   + E  +AA       E++GR + ++                            + V+VGNLS+   +  L T F   G +   ++  D +SGR +GFG+VT+S  +     ++ +NG  +AGR  R+  +  R  G
Sbjct:  265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNGHFIAGRPCRLDFSTPRTGG 447          
BLAST of DY263039 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.109e-15
Identity = 56/187 (29.95%), Postives = 90/187 (48.13%), Query Frame = 3
Query:  327 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEA-KVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 884
            S  + D  ++VG L   V    L  LF  AG V    +  D+VTG+ +G+GFV   S E+ + A +  N  +L G+P+RVN                              +++GNL   +D+  L   F   G +L+  K++ D ++G S+G+ F+ ++S +  D AI+++NG  L  R I VS A
Sbjct:    7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA----------------NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177          
BLAST of DY263039 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.109e-15
Identity = 56/187 (29.95%), Postives = 90/187 (48.13%), Query Frame = 3
Query:  327 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEA-KVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 884
            S  + D  ++VG L   V    L  LF  AG V    +  D+VTG+ +G+GFV   S E+ + A +  N  +L G+P+RVN                              +++GNL   +D+  L   F   G +L+  K++ D ++G S+G+ F+ ++S +  D AI+++NG  L  R I VS A
Sbjct:    7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA----------------NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177          
BLAST of DY263039 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.109e-15
Identity = 56/187 (29.95%), Postives = 90/187 (48.13%), Query Frame = 3
Query:  327 SNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEA-KVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 884
            S  + D  ++VG L   V    L  LF  AG V    +  D+VTG+ +G+GFV   S E+ + A +  N  +L G+P+RVN                              +++GNL   +D+  L   F   G +L+  K++ D ++G S+G+ F+ ++S +  D AI+++NG  L  R I VS A
Sbjct:    7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA----------------NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177          
BLAST of DY263039 vs. ExPASy Swiss-Prot
Match: SAP49_SCHPO (Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe GN=sap49 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.109e-15
Identity = 59/184 (32.07%), Postives = 86/184 (46.74%), Query Frame = 3
Query:  342 DLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 893
            D  +++GNL   V  + L  L   AG V  + +  D+V     GFGF      ++VE A Q  N  +L G+P+RVN                              ++VGNL   VD+  L   F   G++++A  V   E+GRS+G+GFV+Y S E  D AI+++N   L  + I VS A  R
Sbjct:   10 DATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRASQDRGVNTLIGA---------------NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKR 178          
BLAST of DY263039 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.109e-15
Identity = 56/181 (30.94%), Postives = 84/181 (46.41%), Query Frame = 3
Query:  351 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 893
            +F+ NL  S+D+  L   F   GN+   +V+ D+    S+G+GFV   + E  E A  + NG  L  R + V                               VY+ N    +DD  L+  F + G  L  KV+ D + G+SRGFGFV++   E+   A+D +NG DL G+AI V  A+ +
Sbjct:  101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF---------TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKK 269          

HSP 2 Score: 79.7221 bits (195), Expect = 3.978e-14
Identity = 57/195 (29.23%), Postives = 88/195 (45.13%), Query Frame = 3
Query:  318 EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXN-RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARHK 899
            E G+       +++ N    +D  +L   F   G    V+V+ D   G+SRGFGFV+    E+ + A    NG +L G+ + V                                +YV NL  G+DD  L   F   G +  AKV+   E GRS+GFGFV +SS EE   A+  +NG  +A + + V++A+ + +
Sbjct:  182 ELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD-HGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMM--EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373          
BLAST of DY263039 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.755e-15
Identity = 39/82 (47.56%), Postives = 59/82 (71.95%), Query Frame = 3
Query:  657 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARHKG 902
            R +VG L+W   + +LE  F   G++L++KV+ DRE+GRSRGFGFVT+SS   + +AI+++NG +L GR I V+ A++R  G
Sbjct:    9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSRGGG 90          
BLAST of DY263039 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.699e-15
Identity = 53/181 (29.28%), Postives = 88/181 (48.62%), Query Frame = 3
Query:  351 LFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 893
            +F+ NL  S+D+  L   F   GN+   +V+ D+    S+G+ FV   + E  + A ++ NG  L  R + V                               VY+ N    VDD +L+ LF + GK L  KV+ D  +G+S+GFGFV+Y   E+ + A++ +NG +++G+ I V  A+ +
Sbjct:  101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF---------TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269          

HSP 2 Score: 80.1073 bits (196), Expect = 3.046e-14
Identity = 55/195 (28.21%), Postives = 87/195 (44.62%), Query Frame = 3
Query:  318 EDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXN-RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARHK 899
            E G+       +++ N    VD   L  LF   G    V+V+ D   G+S+GFGFV+    E+   A ++ NG E+ G+ + V                                +Y+ NL   +DD  L   F   G +  AKV+   E GRS+GFGFV +SS EE   A+  +NG  +  + + V++A+ + +
Sbjct:  182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373          
BLAST of DY263039 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.699e-15
Identity = 39/82 (47.56%), Postives = 60/82 (73.17%), Query Frame = 3
Query:  657 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARHKG 902
            R +VG L+W  ++  LE  F   G+V+++KV+ DRE+GRSRGFGFVT+SS + + +AI+++NG +L GR I V+ A++R  G
Sbjct:    9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSRGGG 90          
The following BLAST results are available for this feature:
BLAST of DY263039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
GRP10_BRANA1.615e-1546.34Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GAR2_SCHPO1.615e-1528.80Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 ... [more]
SF3B4_RAT2.109e-1529.95Splicing factor 3B subunit 4 OS=Rattus norvegicus ... [more]
SF3B4_MOUSE2.109e-1529.95Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf... [more]
SF3B4_HUMAN2.109e-1529.95Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF... [more]
SAP49_SCHPO2.109e-1532.07Spliceosome-associated protein 49 OS=Schizosacchar... [more]
PABPB_XENLA2.109e-1530.94Polyadenylate-binding protein 1-B OS=Xenopus laevi... [more]
GRPA_MAIZE2.755e-1547.56Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
PABP4_HUMAN4.699e-1529.28Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]
GRP2_SORBI4.699e-1547.56Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CF03RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263039 ID=DY263039; Name=DY263039; organism=Citrus clementina; type=EST; length=1261bp
CAAAACTTTATCTTCTTCATTTTCGAAGCTTTCAAAGAAACTCAAAAACC
CTTGAGCCAGTAGCCATGTCTACGACGTCAGCTTCTTCGCTGGTGCTCCC
ATCTCTCAGTCCCAAAACCCTAGCCTTCTACAACTCAAAACCCACTTCAT
TTTCTCTCTTATCTTCCTCCTCTTCTCACAAACTTCTAGCGAAGCCCATC
TCGATATCCTCTTCTTTCATCCATTCTTTTCAACCCTTGCCCTCTTCCCC
CTCTCGTTTCGTCAGAAACGTAGCCGTTTCGTCCGAGTTTGACCAGGAAG
AGGACCTTTTGAGCGATGAAGACGGTTCGAATTTCTCCCCCGACTTGAAA
CTTTTTGTGGGTAACCTTCCTTTTAGCGTTGACAGTGCTCAGCTTGCTGG
CTTGTTTGAAACCGCTGGAAATGTTGAGATGGTTGAGGTAATATATGACA
AGGTCACTGGGAGAAGCAGAGGATTTGGTTTTGTGACCATGTCAAGTGTT
GAGGAAGTTGAAGCAGCTGCTCAGCAGTTCAATGGCTATGAACTCGAGGG
CCGACCCCTGAGGGTGAACTCTGGACCTCCTCCTCCTAGGAGGGAAGAAT
TCTCTCCCAGAGGGCCCAGAGGAGGTGGTGCTGGTGCGCCTTCTAGTGGT
GGCAACCGTGTTTATGTTGGTAACCTTTCATGGGGTGTTGATGATTTAGC
TCTTGAGACTTTGTTTCGTGAGCAAGGGAAGGTTTTGGAAGCCAAAGTGG
TATATGACAGGGAGAGTGGTAGATCGCGGGGTTTCGGGTTTGTGACTTAC
AGTTCTGCTGAAGAGGTTGACAATGCAATTGATTCCTTGAATGGTGTAGA
TTTGGCCGGTAGAGCAATTCGAGTCTCGGTGGCTGAAGCAAGGCACAAAG
GCGTCAATTTTGAGCTGTGGCAGAAACTAGTTTTCAGTTGTTTTTGATTT
ATCGGTAGTTATTTGTGTTGTTATAAGGCTGCTTATCAGTGCCTATCAAT
CATCGGCTTTCAAAACAATTCATGGATAATTGTTTTTGCATATGCGAAAA
GGATGGTGCCCTGGTAAAAAATTTCAAACATCAACCTAAGCCAAAAAAAT
TTTGGGAACTGCTTTATTTTCAAAAAAGGATCCTTGGCATCTGGGGATTT
TGAAAAATTCCAATCCCTGTGAAACCTTTGCCGAAAAAAAGGGGGAACTT
TGAAAAGGTTCGGGTCCAAAAACTTTTTACCTCCCCGTGTCTCCAAAAAA
CAAAAAATTTG
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