DY263043

Overview
NameDY263043
Unique NameDY263043
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1321
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263043 vs. ExPASy Swiss-Prot
Match: ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 3.464e-24
Identity = 68/250 (27.20%), Postives = 115/250 (46.00%), Query Frame = 3
Query:  336 TDCIFDVRDYGAVGDGSXXXXXXXXXXXXXXXXVEAGV-VLAPSDYVFKITSTIFSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTG--KGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCD-SPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYIP**ATVTNAFQLKRGAQKWDIGEVPWGASHGIRHGNPGGPNSQAGV 1073
            T     V D+GA GDG                     V +L P    + + S   +GPC   L  Q+ G L        +       +W++F  +++++  G   G ++GNG+ WW   CK ++         PC  +P  + F+ S +L+V  L ++N+ Q  +  + C  V +  + +++P  SPNTDGIHI NT+++ +      T  +   ++ G+Q   I ++  G  HGI  G+ G  NS+A V
Sbjct:   64 TPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCNSILTVQIFGTLSASQKRSDYKDIS---KWIMFDGVNNLSVDGGDTGVVDGNGETWWQNSCKRNKAK-------PCTKAPTALTFYNSKSLIVKNLKVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSESIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDDNSKAFV 303          
BLAST of DY263043 vs. ExPASy Swiss-Prot
Match: PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.234e-22
Identity = 73/245 (29.80%), Postives = 115/245 (46.94%), Query Frame = 3
Query:  345 IFDVRDYGAVGDGSXXXXXXXXXXXXXXXXVEAGVVLAPSDYVFKITSTIFSGPCK-PRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPAL-IRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYIP**ATVTNAFQLKRGAQKWDIGEVPWGASHGIRHGNPGGPNSQAGV 1073
            +F+V DYGA G G                   + V++   +Y   +      GPCK  ++ FQ+DGV+  P  P  + K+D    W+ FY++D +T +G GT++G GQ  W          N    +  C   A+ +RF    + +V  +T  NS  FH+    CE +    +++++P  S NTDGIH+  +K V I     AT  +   +  G+Q   I +V  G  HGI  G+ G  N++  V
Sbjct:    9 VFNVNDYGAKGAGDISQAVMKAWKAACASQGPSTVLIPKGNY--NMGEVAMQGPCKGSKIGFQIDGVVKAPADPSKF-KSDG---WVSFYRIDGLTVSGTGTLDGQGQTAW--------AKNNCDKNPNCKHAAMNLRFDFLKHAMVRDITSLNSKMFHINVLECEDITFQHVTVTAPGTSINTDGIHVGISKGVTITNTKIATGDDCISIGPGSQNVTITQVNCGPGHGISIGSLGRYNNEKEV 239          
BLAST of DY263043 vs. ExPASy Swiss-Prot
Match: ADPG1_ARATH (Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 5.530e-22
Identity = 71/247 (28.74%), Postives = 109/247 (44.13%), Query Frame = 3
Query:  354 VRDYGAVGDGSXXXXXXXXXXXXXXXXVEAGVV-LAPSDYVFKITSTIFSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTG--KGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCD-SPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYIP**ATVTNAFQLKRGAQKWDIGEVPWGASHGIRHGNPGGPNSQAGVPKI 1082
            V ++GA GDG                        L P    + + ST F GPCK    FQ+ G L        +     +  WL+   +++++  G   G I GNG+ WW   CK  +       S PC  +P  +  +   NL V  L ++N+ Q  +  + C  V +  + I++P  SPNTDGIHI NT+++ +      T  +   ++ G Q   I ++  G  HGI  G+ G  NS+A V  I
Sbjct:   70 VSNFGAKGDGKTDDTQAFKKAWKKACSTNGVTTFLVPKGKTYLLKSTRFRGPCKSLRNFQILGTLSASTKRSDYK---DKNHWLILEDVNNLSIDGGSTGIINGNGKTWWQNSCKIDK-------SKPCTKAPTALTLYNLKNLNVKNLRVKNAQQIQISIEKCNKVEVSNVEITAPGDSPNTDGIHITNTQNIRVSNSDIGTGDDCISIEDGTQNLQIFDLTCGPGHGISIGSLGDDNSKAYVSGI 306          
BLAST of DY263043 vs. ExPASy Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.584e-21
Identity = 77/252 (30.56%), Postives = 109/252 (43.25%), Query Frame = 3
Query:  351 DVRDYGAVGDG-SXXXXXXXXXXXXXXXXVEAGVVLAPSDYVFKITSTIFSGPCKPRLVF-QLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYIP**ATVTNAFQLKRGAQKWDIGEVPWGASHGIRHGNPGGPNSQAGVPKIKSQNGN 1100
            DV  +GAVGDG +                   G  + P+   F +    F G CK   VF Q+ G L+ P     W K D + QW++F  ++ +   G G I G G  WW+     H+G            P  ++F   +NL +SGLT  +SP  H+    C  V I  L I++P+ SPNTDGI +  + +V I     AT  +   +  G     I  +  G  HGI  G+ G     A V  +  QN N
Sbjct:   25 DVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPS-KGNW-KGD-KDQWILFTDIEGLVIEGDGEINGQGSSWWE-----HKGSR----------PTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCN 258          
BLAST of DY263043 vs. ExPASy Swiss-Prot
Match: PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.362e-20
Identity = 66/251 (26.29%), Postives = 107/251 (42.63%), Query Frame = 3
Query:  345 IFDVRDYGAVGDGSXXXXXXXXXXXXXXXXVEAGVVLAPSDYVFKITSTIFSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCD-SPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYIP**ATVTNAFQLKRGAQKWDIGEVPWGASHGIRHGNPGGPNSQAGVPKIKSQN 1094
            ++D+  +GAVGDGS                      L      F     IF+GPCK ++   + G ++        P      +W +F ++D++  TG GT  G G+  W          +G      C+  P  ++F    N+ ++G++  N+  FHM     E V I  + +++P  SPNTDGIH+ N  +V I     AT  +   + RG+    +  V  G  HG+  G+ G   ++  V  I   N
Sbjct:   51 VYDITKFGAVGDGSTNTFKAFLNTWIQVCDSPVPATLLVPKGTFLAGPVIFAGPCKSKVTVNVIGTIIATTSGYATP------EWFLFERVDNLVLTGTGTFHGKGEAVWKA--------DGCGKKVQCNLPPTSLKFRNMKNVEINGISSVNAKAFHMFLVKTENVNIQNIKLTAPAESPNTDGIHLSNADNVSILDSTIATGDDCVSVGRGSNNVTVERVICGPGHGLSVGSLGKYKNEEDVSGIHVNN 287          
BLAST of DY263043 vs. ExPASy Swiss-Prot
Match: PGLR_PRUPE (Polygalacturonase OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.275e-18
Identity = 67/217 (30.88%), Postives = 104/217 (47.93%), Query Frame = 3
Query:  444 GVVLAPSDYVFKITSTIFSGPCKPRLV-FQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRG---PNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYIP**ATVTNAFQLKRGAQKWDIGEVPWGASHGIRHGNPGGPNSQAGVPKI 1082
            GV+  P+   F +   +FSGPCK   + F++ G L+    P  +    +   W+ F+ ++ +T +G G ++G G   W   CK   G   P+G+T+ G  DS         +N+VVSGL   NS  FH+  +  + V +  + +S    SPNTDGIH++ +  V I     AT  +   +  G     I  V  G  HGI  G+ G    +AGV  +
Sbjct:   61 GVIYVPAGTFF-LRDVVFSGPCKNNAITFRIAGTLV---APSDYRVIGNAANWIFFHHVNGVTISG-GILDGQGTALW--ACKACHGESCPSGATTLGFSDS---------NNIVVSGLASLNSQMFHIVINDFQNVQMQGVRVSRSGNSPNTDGIHVQMSSGVTILNSKIATGDDCVSIGPGTSNLWIEGVACGPGHGISIGSLGKEQEEAGVQNV 261          
BLAST of DY263043 vs. ExPASy Swiss-Prot
Match: PGLR_MEDSA (Polygalacturonase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.995e-17
Identity = 56/209 (26.79%), Postives = 96/209 (45.93%), Query Frame = 3
Query:  474 FKITSTIFSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMS--SNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYIP**ATVTNAFQLKRGAQKWDIGEVPWGASHGIRHGNPGGPNSQAGVPKIKSQN 1094
            +++      GPCK  +  Q+DG +  P  P         +QW  F  +D +T +GKG  +G G   +         P  + S    +S   + F  +  +N +V G+T ++S  FH+   GC+ +  D  +I++P  SPNTDGIH+  +  V I      T  +   +  G+++  +  V  G  HG+  G+ G   ++  V  I  +N
Sbjct:   65 YQLNGIELKGPCKAPIELQVDGTIQAPADPSV---IKGTEQWFKFLYMDHLTLSGKGVFDGQGATVYK-----KAAPASAWSGKNSNSKVFMNFGFNFVNNSIVRGVTSKDSKNFHVMVFGCKNITFDGFTITAPGDSPNTDGIHMGKSTDVKILNTNIGTGDDCVSIGDGSKQITVQGVNCGPGHGLSVGSLGKFTTEENVEGITVKN 265          
BLAST of DY263043 vs. ExPASy Swiss-Prot
Match: PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.922e-16
Identity = 60/236 (25.42%), Postives = 95/236 (40.25%), Query Frame = 3
Query:  345 IFDVRDYGAVGDGSXXXXXXXXXXXXXXXXVEAGVVLAPSDYVFKITSTIFSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYIP**ATVTNAFQLKRGAQKWDIGEVPWGASHGIRHGNPGG 1052
            +FD+  YGA  +                    + +V+      F +      GPCK  L  Q+   L  P  P      +    WL   KLD  T +G G ++G     W+  CK  +  N          P  + F   +N  +  +T  +S  FH+  + C+ +   + ++S+P  SPNTDGIH+  + SV I     +T  +   +    ++  I  V  G  HGI  G+ GG
Sbjct:   26 VFDITKYGANSNADISEALLNAFKEACQSTSPSTIVIPKG--TFTMNQVKLEGPCKSPLELQIQATLKAPSDPSQLKVGE----WLTVNKLDQFTMSGGGILDGQAAAAWE--CKQSKKCN--------KLPNNLSFNSLTNSTIKDITTLDSKSFHVNVNQCKNLTFIRFNVSAPANSPNTDGIHVSRSSSVNITDSNFSTGDDCISVGDETEQLYITRVTCGPGHGISVGSLGG 245          
BLAST of DY263043 vs. ExPASy Swiss-Prot
Match: PGLR2_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.922e-16
Identity = 57/204 (27.94%), Postives = 93/204 (45.59%), Query Frame = 3
Query:  474 FKITSTIFSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDS-PALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYIP**ATVTNAFQLKRGAQKWDIGEVPWGASHGIRHGNPGGPNSQAGVPKI 1082
            F +    F+GPCK  +  Q+DG L+       + +  +   W+   ++D++  TGKG ++G G   W          N  T    C   P  +     +N  VSG+T+ NS  FHM    C+ ++I  +++++P  SPNTDGIH+ ++  + I         +   +  G  K +I  V  G  HGI  G+ G    +  V  I
Sbjct:   83 FLVGQLNFTGPCKGDVTIQVDGNLLATTDLSQYKEHGN---WIEILRVDNLVITGKGNLDGQGPAVWS--------KNSCTKKYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYQCKNMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDI 275          
BLAST of DY263043 vs. ExPASy Swiss-Prot
Match: PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.010e-15
Identity = 58/227 (25.55%), Postives = 98/227 (43.17%), Query Frame = 3
Query:  438 EAGVVLAPSDYV-----FKITSTIFSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYIP**ATVTNAFQLKRGAQKWDIGEVPWGASHGIRHGNPGGPNSQAGVPKIKSQNGNI 1103
            EA   + PS  V     + ++     GPCK  +   + G +  P  P  +   +    W+ FY +++    G G  +G G   ++     +R             P  IRF   +N ++  +T ++S  FH+    C+ + +++L I +P  SPNTDGIH+  ++ V I      T  +   +  G +   I E+  G  HGI  G+ G   ++  V  IK  N  I
Sbjct:   55 EACASVTPSTVVIPKGTYLLSKVNLEGPCKAPIEINVQGTIQAPADPSAFKDPN----WVRFYSVENFKMFGGGIFDGQGSIAYEKNTCENREFRSKL-------PVNIRFDFLTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNCTI 270          
The following BLAST results are available for this feature:
BLAST of DY263043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ADPG2_ARATH3.464e-2427.20Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN... [more]
PGLR2_PLAAC4.234e-2229.80Exopolygalacturonase (Fragment) OS=Platanus acerif... [more]
ADPG1_ARATH5.530e-2228.74Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN... [more]
PGLR3_ARATH3.584e-2130.56Probable polygalacturonase At3g15720 OS=Arabidopsi... [more]
PGLR1_ARATH1.362e-2026.29Exopolygalacturonase clone GBGE184 OS=Arabidopsis ... [more]
PGLR_PRUPE1.275e-1830.88Polygalacturonase OS=Prunus persica PE=2 SV=1[more]
PGLR_MEDSA6.995e-1726.79Polygalacturonase OS=Medicago sativa PE=2 SV=1[more]
PGLR_TOBAC5.922e-1625.42Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2... [more]
PGLR2_MAIZE5.922e-1627.94Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1[more]
PGLR_GOSHI1.010e-1525.55Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CF07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263043 ID=DY263043; Name=DY263043; organism=Citrus clementina; type=EST; length=1321bp
CCTCTGCCTCTCACTTCATTCTTTTAATTCATTCTTTATTCAGAATTTTT
CCTGTGAAGTAACTTTGACACATTCTCCATTTTTCTTGTTTTATTTTCCT
GAAGAAATTGCATTCAATGGAGAGTATTCGGGAGCTGTTACTAATTCTAC
TAGCAGTGATTCTTTTGGTACAAAATTTAAGCAATGTGGAAGCAAGGTAC
CATCATCACAAGAAACAGAAAAACAAAGGCTCCACTGTTCCTCCCCCGGC
TTCTCCAGAGAATCCTGTCTCTTCATCACCTTCATATTCTCCATCAGTCC
CCTCAGACCCTTATCCGAATGATCCAGTGAATTCCACTGACTGCATTTTT
GATGTAAGAGATTACGGGGCAGTTGGTGATGGCTCTGCCGATGACACCGC
TGCTTTCAGGGCTGCATGGAAAGCAGCCTGTGCTGTAGAAGCAGGGGTTG
TTCTGGCTCCTTCAGATTATGTTTTCAAAATCACTTCAACAATTTTCTCA
GGGCCGTGCAAGCCAAGACTTGTATTCCAGCTTGATGGGGTTCTAATGCC
ACCTGATGGACCGGATACTTGGCCCAAAGCTGATAGCCGCAAGCAATGGC
TTGTGTTTTACAAACTTGATGATATGACATTCACTGGTAAGGGCACCATT
GAAGGGAATGGACAGCCATGGTGGGATCTGCCCTGCAAACCTCACCGGGG
GCCTAACGGATCGACGTCATCAGGTCCATGTGACAGCCCTGCTTTGATTA
GGTTCTTCATGAGCTCAAATTTGGTAGTTAGTGGCTTAACAATTCAAAAC
AGTCCTCAGTTTCACATGAAGTTTGATGGATGCGAAGGCGTCATGATTGA
CAAGCTCTCCATTTCTTCACCAAAACTCAGCCCCAACACCGATGGAATCC
ACATTGAGAACACAAAGTCTGTTGGAATTTACATTCCCTGATAAGCAACG
GTGACCAATGCCTTTCAATTGAAACGGGGGGCTCAAAAGTGGGATATTGG
TGAAGTCCCTTGGGGGGCCAGTCACGGGATCCGCCATGGGAACCCTGGTG
GCCCCAATTCCCAGGCTGGTGTCCCAAAAATAAAATCCCAAAATGGCAAC
ATTAAAAAATAAAAAAAGGGGCCTAGGGATAAAAAAAAGGGAGGGGGGGC
CAAGGCGTGGGTTTTCAAACTTTTTTTTTTGAAAAAATTTCAAAAGGGAA
AAGGGGGAAAAAACGGCTCAAAAAATAAAAACACAAAAAAATCTGGTTCT
TTAAACAAGGGAGGGGGGTTTAAAAACACCCAAACCCCCCCCCCAAAATT
TTTTTTTTTCTCCAAACGGGA
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