DY263043

Overview
NameDY263043
Unique NameDY263043
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1321
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263043 vs. ExPASy Swiss-Prot
Match: PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.010e-15
Identity = 58/227 (25.55%), Postives = 98/227 (43.17%), Query Frame = 3
Query:  438 EAGVVLAPSDYV-----FKITSTIFSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYIP**ATVTNAFQLKRGAQKWDIGEVPWGASHGIRHGNPGGPNSQAGVPKIKSQNGNI 1103
            EA   + PS  V     + ++     GPCK  +   + G +  P  P  +   +    W+ FY +++    G G  +G G   ++     +R             P  IRF   +N ++  +T ++S  FH+    C+ + +++L I +P  SPNTDGIH+  ++ V I      T  +   +  G +   I E+  G  HGI  G+ G   ++  V  IK  N  I
Sbjct:   55 EACASVTPSTVVIPKGTYLLSKVNLEGPCKAPIEINVQGTIQAPADPSAFKDPN----WVRFYSVENFKMFGGGIFDGQGSIAYEKNTCENREFRSKL-------PVNIRFDFVTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNCTI 270          
BLAST of DY263043 vs. ExPASy Swiss-Prot
Match: PGLR1_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.010e-15
Identity = 57/204 (27.94%), Postives = 91/204 (44.61%), Query Frame = 3
Query:  474 FKITSTIFSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDS-PALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYIP**ATVTNAFQLKRGAQKWDIGEVPWGASHGIRHGNPGGPNSQAGVPKI 1082
            F +    F+GPCK  +  Q+DG L+       +        W+   ++D++  TGKG ++G G   W          N  T    C   P  +     +N  VSG+T+ NS  FHM    C+ ++I  +++++P  SPNTDGIH+ ++  + I         +   +  G  K +I  V  G  HGI  G+ G    +  V  I
Sbjct:   83 FLVGQLNFTGPCKGDVTIQVDGNLLATTDLSQYK---DHGNWIEILRVDNLVITGKGNLDGQGPAVWS--------KNSCTKKYDCKILPNSLVMDFVNNGEVSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGIHMGDSSGITITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDI 275          
BLAST of DY263043 vs. ExPASy Swiss-Prot
Match: PGLR2_ARATH (Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana GN=At3g07850 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 6.547e-15
Identity = 65/241 (26.97%), Postives = 96/241 (39.83%), Query Frame = 3
Query:  351 DVRDYGAVGDGSXXXXXXXXXXXXXXXXVEAGVVLAPSDYVFKITSTIFSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTG-KGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDS-PALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYIP**ATVTNAFQLKRGAQKWDIGEVPWGASHGIRHGNPGG-PNSQ 1064
            DV+  GA GD                    + + +   +Y+  + S  F GPCK  +  +L+G       P T         W+ F  + D T  G K   +G G   W          N    +G C+S P  IRF   +N  ++ +T  NS  FHM    C+ + +  + I +P  S NTDGIHI  +  V +      T  +   +  G +   +  V  G  HGI  G+ G  PN Q
Sbjct:   71 DVKASGAKGDSKTDDSAAFAAAWKEACAAGSTITVPKGEYM--VESLEFKGPCKGPVTLELNGNFK---APATVKTTKPHAGWIDFENIADFTLNGNKAIFDGQGSLAWKA--------NDCAKTGKCNSLPINIRFTGLTNSKINSITSTNSKLFHMNILNCKNITLSDIGIDAPPESLNTDGIHIGRSNGVNLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRYPNEQ 298          
BLAST of DY263043 vs. ExPASy Swiss-Prot
Match: PGLR_BRANA (Polygalacturonase OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 8.551e-15
Identity = 57/208 (27.40%), Postives = 87/208 (41.83%), Query Frame = 3
Query:  474 FKITSTIFSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDS-PALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYIP**ATVTNAFQLKRGAQKWDIGEVPWGASHGIRHGNPGGPNSQAGVPKIKSQN 1094
            FK+  T+ +GPCK  + F L G +    G         + +W+VF K++     G GT +G G   W          N    +  C   P  +RF    N  +  +T  ++  FH      + +  D + I +P  SPNTDGIH+   + V I     AT  +   +  G +   I +V  G  HGI  G+ G    +  V  I  +N
Sbjct:   62 FKLGETVMTGPCKSPIEFTLQGNVKTDGG-----STQGKDRWVVFEKINGFKLNGGGTFDGEGNAAWKA--------NNCHKTFECKKLPISVRFDFVDNAEIKDVTSLDAKNFHFNVISGKNMTFDNIKIIAPAESPNTDGIHLGRCEGVKILNTKIATGDDCISVGDGMKNLLIEKVVCGPGHGISVGSLGRYGWEQDVTDITVKN 256          
BLAST of DY263043 vs. ExPASy Swiss-Prot
Match: PGLR6_ARATH (Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.459e-14
Identity = 56/178 (31.46%), Postives = 87/178 (48.88%), Query Frame = 3
Query:  561 PDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDSPALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYIP**ATVTNAFQLKRGAQKWDIGEVPWGASHGIRHGNPGGPNSQAGVPKIKSQN 1094
            P+ +    S K W+ F  + D++  G G ++  G   W   CK + G N      P  + +L+ F  S+N+ +SGLT  NS +FH+  D    V ID + +S+ + SPNTDGIH+E++ SV I      T  +   +  G+    I  +  G  HGI  G+ G    + GV  +   N
Sbjct:  103 PEDFRIIASSKHWIWFEDVTDVSIYG-GILDAQGTSLWK--CKNNGGHNC-----PTGAKSLV-FSGSNNIKISGLTSINSQKFHIVIDNSNNVNIDGVKVSADENSPNTDGIHVESSHSVHITNSRIGTGDDCISIGPGSTNVFIQTIRCGPGHGISIGSLGRAEEEQGVDNVTVSN 271          
BLAST of DY263043 vs. ExPASy Swiss-Prot
Match: PGLR3_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.459e-14
Identity = 55/197 (27.92%), Postives = 88/197 (44.67%), Query Frame = 3
Query:  495 FSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGPCDS-PALIRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYIP**ATVTNAFQLKRGAQKWDIGEVPWGASHGIRHGNPGGPNSQAGVPKI 1082
            F+GPCK  +  Q++G L+       +        W+   ++D++  TGKG ++G G   W          N       C   P  +     +N  VSG+T+ NS  FHM    C+ ++I  +++++P  SPNTDGIH+ ++  V I         +   +  G  K +I  V  G  HGI  G+ G    +  V  I
Sbjct:   90 FTGPCKGDVTIQVNGNLLATTDLSQYK---DHGNWIEILRVDNLVITGKGKLDGQGPAVWS--------KNSCVKKYDCKILPNSLVMDFVNNGEVSGITLLNSKFFHMNMYKCKDMLIKDVNVTAPGDSPNTDGIHMGDSSGVTITNTVIGVGDDCISIGPGTSKVNITGVTCGPGHGISIGSLGRYKDEKDVTDI 275          
BLAST of DY263043 vs. ExPASy Swiss-Prot
Match: PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.905e-14
Identity = 58/212 (27.36%), Postives = 93/212 (43.87%), Query Frame = 3
Query:  474 FKITSTIFSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKGTIEGNGQPWWDLPCKPHRGPNGSTSSGP-CDSPAL-IRFFMSSNLVVSGLTIQNSPQFHMKFDGCEGVMIDKLSISSPKLSPNTDGIHIENTKSVGIYIP**ATVTNAFQLKRGAQKWDIGEVPWGASHGIRHGNPGGPNSQAGVPKIKSQNGNI 1103
            F +      GPCK  +  QL G L  P  P           W+   K+D +T  G G  +G G+  W          N    +GP C + ++ +R +  +N ++  +T  +S  FH+   GC+ +  ++  IS+ + S NTDGIHI  +  V I      T  +   L  G++  +I  +  G  HGI  G+ G   ++  V  I  +N  I
Sbjct:   29 FAVGLITLEGPCKSSIGLQLQGTLKAPADPSKIKGLG----WINLNKIDLLTIFGGGVFDGQGKSAWV--------QNDCHKNGPICKTLSMNLRLYAVTNSILRDVTTLDSKNFHVNVIGCKNLTFERFKISAAETSINTDGIHIGRSDGVNIINTEIKTGDDCISLGDGSKNINITNITCGPGHGISVGSLGRYKNEESVVGIYVKNCTI 228          
The following BLAST results are available for this feature:
BLAST of DY263043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PGLR_GOSBA1.010e-1525.55Polygalacturonase OS=Gossypium barbadense GN=G9 PE... [more]
PGLR1_MAIZE1.010e-1527.94Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1[more]
PGLR2_ARATH6.547e-1526.97Exopolygalacturonase clone GBGA483 OS=Arabidopsis ... [more]
PGLR_BRANA8.551e-1527.40Polygalacturonase OS=Brassica napus PE=2 SV=1[more]
PGLR6_ARATH1.459e-1431.46Probable polygalacturonase At2g43860 OS=Arabidopsi... [more]
PGLR3_MAIZE1.459e-1427.92Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1[more]
PGLR_OENOR1.905e-1427.36Exopolygalacturonase (Fragment) OS=Oenothera organ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CF07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263043 ID=DY263043; Name=DY263043; organism=Citrus clementina; type=EST; length=1321bp
CCTCTGCCTCTCACTTCATTCTTTTAATTCATTCTTTATTCAGAATTTTT
CCTGTGAAGTAACTTTGACACATTCTCCATTTTTCTTGTTTTATTTTCCT
GAAGAAATTGCATTCAATGGAGAGTATTCGGGAGCTGTTACTAATTCTAC
TAGCAGTGATTCTTTTGGTACAAAATTTAAGCAATGTGGAAGCAAGGTAC
CATCATCACAAGAAACAGAAAAACAAAGGCTCCACTGTTCCTCCCCCGGC
TTCTCCAGAGAATCCTGTCTCTTCATCACCTTCATATTCTCCATCAGTCC
CCTCAGACCCTTATCCGAATGATCCAGTGAATTCCACTGACTGCATTTTT
GATGTAAGAGATTACGGGGCAGTTGGTGATGGCTCTGCCGATGACACCGC
TGCTTTCAGGGCTGCATGGAAAGCAGCCTGTGCTGTAGAAGCAGGGGTTG
TTCTGGCTCCTTCAGATTATGTTTTCAAAATCACTTCAACAATTTTCTCA
GGGCCGTGCAAGCCAAGACTTGTATTCCAGCTTGATGGGGTTCTAATGCC
ACCTGATGGACCGGATACTTGGCCCAAAGCTGATAGCCGCAAGCAATGGC
TTGTGTTTTACAAACTTGATGATATGACATTCACTGGTAAGGGCACCATT
GAAGGGAATGGACAGCCATGGTGGGATCTGCCCTGCAAACCTCACCGGGG
GCCTAACGGATCGACGTCATCAGGTCCATGTGACAGCCCTGCTTTGATTA
GGTTCTTCATGAGCTCAAATTTGGTAGTTAGTGGCTTAACAATTCAAAAC
AGTCCTCAGTTTCACATGAAGTTTGATGGATGCGAAGGCGTCATGATTGA
CAAGCTCTCCATTTCTTCACCAAAACTCAGCCCCAACACCGATGGAATCC
ACATTGAGAACACAAAGTCTGTTGGAATTTACATTCCCTGATAAGCAACG
GTGACCAATGCCTTTCAATTGAAACGGGGGGCTCAAAAGTGGGATATTGG
TGAAGTCCCTTGGGGGGCCAGTCACGGGATCCGCCATGGGAACCCTGGTG
GCCCCAATTCCCAGGCTGGTGTCCCAAAAATAAAATCCCAAAATGGCAAC
ATTAAAAAATAAAAAAAGGGGCCTAGGGATAAAAAAAAGGGAGGGGGGGC
CAAGGCGTGGGTTTTCAAACTTTTTTTTTTGAAAAAATTTCAAAAGGGAA
AAGGGGGAAAAAACGGCTCAAAAAATAAAAACACAAAAAAATCTGGTTCT
TTAAACAAGGGAGGGGGGTTTAAAAACACCCAAACCCCCCCCCCAAAATT
TTTTTTTTTCTCCAAACGGGA
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