DY263054

Overview
NameDY263054
Unique NameDY263054
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1362
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP2_THEEB (ATP-dependent Clp protease proteolytic subunit 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.998e-23
Identity = 65/173 (37.57%), Postives = 94/173 (54.34%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKARNLESSTRV 958
            RI+++G  +   +   +VA ++YL   DP   I LYINS G         G  + G AIYDT+  +K +V T+ VG A  M   LLAAGTKGKR  +PH++IMI QP   + G   A+D+ I A+E +  R  L +L   HTG   E + + ++     + E+A+N     RV
Sbjct:   31 RIIFLGKEVDDEIANQIVAVMLYLDSEDPGKDIMLYINSPG---------GSVTAGMAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRLALPHSRIMIHQPSGGTRG--QATDIEIEAREILRVRRQLNELYAYHTGQPLEKIERDMDRDFFMSAEEAKNYGLIDRV 192          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_THETN (ATP-dependent Clp protease proteolytic subunit OS=Thermoanaerobacter tengcongensis GN=clpP PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 5.221e-23
Identity = 64/165 (38.79%), Postives = 95/165 (57.58%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKAR 934
            RIV++G  +      LV+A++++L+  DP   I+LYINS G         G  + G AIYDT+  +K +V T+ VG A  MA  LLAAG KGKRF +P+++IMI QP     G   A+D+ I A+  +  RD L ++L ++TG   E +   +E     T E+A+
Sbjct:   28 RIVFLGDEINDTTASLVIAQMLFLEAEDPDKDIWLYINSPG---------GSITAGLAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPWGGMQG--QATDIKIHAERLLRLRDKLERILSENTGQPLEKIKADMERDYFMTAEEAK 181          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_THET8 (ATP-dependent Clp protease proteolytic subunit OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=clpP PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.221e-23
Identity = 62/164 (37.80%), Postives = 94/164 (57.32%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKA 931
            RI+++G P+   V  +VVA+L++L   +P   I LYINS G         G    G AIYDT+  ++  V T+ +G A  MA ++LAAG KG+R+ +PHAK+MI QP     G   ASD+ I+A+E +  +  L ++L +HTG   E V K  +     + ++A
Sbjct:   27 RIIFLGTPIDAQVANVVVAQLLFLDAQNPNQEIKLYINSPG---------GEVDAGLAIYDTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHAKVMIHQPWGGVRG--TASDIAIQAQEILKAKKLLNEILAKHTGQPLEKVEKDTDRDYYLSAQEA 179          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_THET2 (ATP-dependent Clp protease proteolytic subunit OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=clpP PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 5.221e-23
Identity = 62/164 (37.80%), Postives = 94/164 (57.32%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKA 931
            RI+++G P+   V  +VVA+L++L   +P   I LYINS G         G    G AIYDT+  ++  V T+ +G A  MA ++LAAG KG+R+ +PHAK+MI QP     G   ASD+ I+A+E +  +  L ++L +HTG   E V K  +     + ++A
Sbjct:   27 RIIFLGTPIDAQVANVVVAQLLFLDAQNPNQEIKLYINSPG---------GEVDAGLAIYDTMQFVRAPVSTIVIGMAASMAAVILAAGEKGRRYALPHAKVMIHQPWGGVRG--TASDIAIQAQEILKAKKLLNEILAKHTGQPLEKVEKDTDRDYYLSAQEA 179          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_PELUB (ATP-dependent Clp protease proteolytic subunit OS=Pelagibacter ubique GN=clpP PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.221e-23
Identity = 63/165 (38.18%), Postives = 93/165 (56.36%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKAR 934
            RI+++  P+   V  LV A+L++L+  DPK  I LYINS G         G+ + G  IYDT+  +K +V T+ +G A  M   LLAAG KGKRF +P+++IM+ QP     G   A+D+ I A E +  +  L ++  +HTG S + V K LE     T + A+
Sbjct:   37 RIIFLVGPINDNVASLVTAQLLFLESEDPKKEINLYINSPG---------GLVTAGLGIYDTMQYIKPDVSTLCIGQAASMGSFLLAAGKKGKRFSLPNSRIMVHQPSAGFQG--QATDIEIHANEVLALKKRLNEIYSKHTGKSVDDVKKALERDNFMTPDTAK 190          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_GEOSM (ATP-dependent Clp protease proteolytic subunit OS=Geobacter sp. (strain M21) GN=clpP PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.221e-23
Identity = 65/166 (39.16%), Postives = 94/166 (56.63%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKARN 937
            RI+++G  +   V  LV+A+L++L+  DP   I+LYINS G         G+ + G AIYDT+  +K  V T+ VG A  M   LL+ G KGKR+ + +++IMI QP     G   A+D+ I AKE +  +D L  LL +HTG S E V    E     + E+A+N
Sbjct:   27 RIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHLYINSPG---------GVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRYSLVNSRIMIHQPLGGFQG--QATDIHIHAKEILRMKDELNALLAEHTGQSVEKVAADTERDYFMSGEEAKN 181          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_GEOBB (ATP-dependent Clp protease proteolytic subunit OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=clpP PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.221e-23
Identity = 65/166 (39.16%), Postives = 94/166 (56.63%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKARN 937
            RI+++G  +   V  LV+A+L++L+  DP   I+LYINS G         G+ + G AIYDT+  +K  V T+ VG A  M   LL+ G KGKR+ + +++IMI QP     G   A+D+ I AKE +  +D L  LL +HTG S E V    E     + E+A+N
Sbjct:   27 RIIFLGGGIDDNVANLVIAQLLFLEAEDPDKDIHLYINSPG---------GVVTAGMAIYDTMRYIKAPVSTICVGQAASMGAFLLSGGEKGKRYSLVNSRIMIHQPLGGFQG--QATDIHIHAKEILRMKDQLNALLAEHTGQSVEKVAADTERDYFMSGEEAKN 181          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_PELLD (ATP-dependent Clp protease proteolytic subunit OS=Pelodictyon luteolum (strain DSM 273) GN=clpP PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 6.819e-23
Identity = 66/189 (34.92%), Postives = 102/189 (53.97%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKARNLESSTRVSGVVRELFRAEVAPPK 1006
            RI+++G  +   V  L++A+L++L+  DP+  IY+Y+NS G         G  S G  IYDT+  ++ +V TV VG A  M   LLA+G KGKR  +PH++IMI QP   + G    SD++I+A+E    R  L ++L  HTG   + V +  E       E+A +        G++ ++F    AP K
Sbjct:   53 RIIFLGSGIDEHVAGLIMAQLIFLESEDPERDIYIYVNSPG---------GSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGAKGKRASLPHSRIMIHQPSGGAQG--QESDIIIQAREIEKIRRLLEEILASHTGKDVQQVREDSERDRWMNAEEALDY-------GIIDQVFAKRPAPEK 223          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_LEPIN (ATP-dependent Clp protease proteolytic subunit OS=Leptospira interrogans GN=clpP PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 6.819e-23
Identity = 60/166 (36.14%), Postives = 98/166 (59.04%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKARN 937
            RI+++G  +      ++ A+L++L+  +P+  IYLY+NS G         G  S G AIYDT+  +K +V T+ +G A  MA LLLA G  GKR  +P+A+IM+ QP   ++G   ASD+ I+A+E +  ++ L  +  +HTG + E + K  E +   T ++A+N
Sbjct:   28 RIIFLGNAINDDYANVITAQLLFLEAENPERDIYLYLNSPG---------GYVSSGLAIYDTMQYIKPDVRTLCLGQASSMAALLLAGGAAGKRSALPNARIMMHQPMGGATG--QASDIEIQAREVLKLKEILNSIYHKHTGKTVEQIQKDTERNFYMTADEAKN 182          
BLAST of DY263054 vs. ExPASy Swiss-Prot
Match: CLPP_CHLPD (ATP-dependent Clp protease proteolytic subunit OS=Chlorobium phaeobacteroides (strain DSM 266) GN=clpP PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 6.819e-23
Identity = 65/190 (34.21%), Postives = 102/190 (53.68%), Query Frame = 2
Query:  440 RIVYIGMPLVPAVTELVVAELMYLQWMDPKAPIYLYINSTGTTRDDGESVGMESEGFAIYDTLMQMKCEVHTVAVGAAIGMACLLLAAGTKGKRFMMPHAKIMIQQPRLPSSGLLPASDVLIRAKEAMVNRDTLVKLLGQHTGNSEEFVTKTLEEHIIWTLEKARNLESSTRVSGVVRELFRAEVAPPKD 1009
            RI+++G  +   V  L++A+L++L+  DP+  IY+Y+NS G         G  S G  IYDT+  ++ +V TV VG A  M   LLA+GTKGKR  +PH++IMI QP   + G    SD++I+A+E    R  L ++L  HTG   + V +  E       ++A          G++ ++F     P K+
Sbjct:   53 RIIFLGSGIDEHVAGLIMAQLIFLESEDPERDIYIYVNSPG---------GSVSAGLGIYDTMQYIRPDVSTVCVGMAASMGAFLLASGTKGKRASLPHSRIMIHQPSGGAQG--QESDIIIQAREIEKIRRLLEEILASHTGKDVQQVREDSERDRWMNAQEALEY-------GIIDQIFEKRPKPDKE 224          
The following BLAST results are available for this feature:
BLAST of DY263054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP2_THEEB3.998e-2337.57ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_THETN5.221e-2338.79ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THET85.221e-2337.80ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THET25.221e-2337.80ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PELUB5.221e-2338.18ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOSM5.221e-2339.16ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_GEOBB5.221e-2339.16ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PELLD6.819e-2334.92ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LEPIN6.819e-2336.14ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CHLPD6.819e-2334.21ATP-dependent Clp protease proteolytic subunit OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA10CG06RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263054 ID=DY263054; Name=DY263054; organism=Citrus clementina; type=EST; length=1362bp
ATCAAAGTTCAAAACTACAAAAGCACAATCAAAACAGAACTCACCCATTT
AATTAGAAATAAACAAAAAATAAAAAGCTATGTCGACGAGTTTCCTGCAA
GCGCCCATGGCGGCTTTAGTCCCGTCAACTTCAGTTCATTCTCTTAGAAG
CAAAAGCACCCGAAGTTTGAAGACCTTTTGCTCAGCTAAAATTCCCAATC
CCATGCCAGCACACATTAATCCTAACGACCCCTTTCTTTCTAAGCTCGCC
GCTGCCGCGGCAGCCTCCCCGGAAGCGTTTGTTAATCGTCCTTCCAATTC
CGGTACGCTGCCGTATTTGGATATCTACGATTCTCCCACTCTTATGGCCT
CCCCTGCCCAAGTGGAAAGATCGGCTTCATACAATGAACATAGGCCAGAT
ACACCGCCTCCGGATTTGCCTTCGCTGCTTCTTCATGGGAGGATTGTATA
CATTGGCATGCCGTTGGTGCCTGCTGTCACAGAGCTTGTTGTGGCAGAAC
TGATGTACTTGCAGTGGATGGATCCCAAGGCACCTATATATCTTTATATT
AATTCCACGGGTACAACTCGTGATGATGGTGAATCGGTTGGGATGGAGAG
TGAAGGCTTTGCCATTTATGATACATTGATGCAAATGAAGTGTGAGGTAC
ATACAGTTGCTGTTGGAGCTGCTATAGGCATGGCTTGTCTACTACTTGCT
GCTGGAACTAAAGGAAAACGATTTATGATGCCTCATGCCAAAATCATGAT
TCAGCAACCTCGTCTTCCATCATCTGGGTTGCTGCCCGCTAGTGATGTTC
TTATTCGTGCAAAAGAGGCAATGGTAAACAGAGACACACTTGTAAAACTT
CTGGGCCAGCACACTGGAAATTCAGAGGAGTTTGTGACTAAAACATTAGA
AGAACATATCATATGGACTCTAGAAAAAGCCAGGAATTTGGAGTCATCGA
CAAGGGTCTCTGGCGTGGTCAGGGAACTATTTAGGGCGGAAGTTGCTCCT
CCCAAGGATTGGGATAAGAATGGCTGGGATTAAAGTTGGAAAATAATTTT
GATTTTAATTTCTTCCTGGGAAACTTATCGCAGGGAGAAAGTTTGAAAAT
CTTAAAGGCTCTCCGAAAAATCACCCAGGAATTTTTTGAAGCTTATTTAT
CTTTAAAACAATTAACTCCTAAGGGAAAATTCAAAAAACGGCCCGAAAAA
AAAGGGACCCCAATGAAAGCCAAATCAAAAAAAGGGAAGTTTAAAAATAA
GGGAATTTTGGGATATATCTTTTGGAGGGTTTTTCCCCTTTTTTTATTTG
GAATTATAAATAAATATTATTTGTGGTTACCAACAAAAAAGAAGGGGGGT
TCCTTTTAAAAA
back to top