DY263061

Overview
NameDY263061
Unique NameDY263061
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1175
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6390 contig Ccv1_Contig6390:1272..2446. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY263061 vs. ExPASy Swiss-Prot
Match: SDA1_YEAST (Protein SDA1 OS=Saccharomyces cerevisiae GN=SDA1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 9.564e-15
Identity = 55/160 (34.38%), Postives = 79/160 (49.38%), Query Frame = 2
Query:   98 AVGLNVVREICLRMPLLMTDDLLQDLVLYKKSHEKAVSAAARSLITLFREVCPSLLVKKDRGRPT-----------DPKARPRAFGEVSVASNVPGVELLQXXXXXXXXXXXXXXXXXXKENIDTDGDEENQFSGDAIGSEDDDSGDDNAIDEDNDTNNS 544
            A G+N +REIC R PL + + LLQDLV YK S  K V+ AA+SLI L+R+V P +L KKDRG+                 RP+ FG  +    + G+ELL                    E +D D  EE+   G+ +  + D   D +  D D++ +N+
Sbjct:  442 AAGINTIREICSRAPLAIDEILLQDLVEYKGSKAKGVNMAAKSLIALYRDVAPEMLKKKDRGKNAAMEVQEAKKGGKDSKRPQ-FGADNSVQGIAGIELLAKWKKEHGEESENEDADANWE-VDVD-SEEDDVDGEWVTMDSDKEYDVDMEDSDDEKDNA 598          
BLAST of DY263061 vs. ExPASy Swiss-Prot
Match: SDA1_CAEEL (Protein SDA1 homolog OS=Caenorhabditis elegans GN=pro-3 PE=1 SV=4)

HSP 1 Score: 80.1073 bits (196), Expect = 2.783e-14
Identity = 78/297 (26.26%), Postives = 120/297 (40.40%), Query Frame = 2
Query:   92 AIAVGLNVVREICLRMPLLMTDDLLQDLVLYKKSHEKAVSAAARSLITLFREVCPSLLVKKDRGRP---TDPKARPRAFGEVSVASNVPGVELLQXXXXXXXXXXXXXXXXXXKENIDTDGDEENQFSGDAIGSEDDDSG-DDNAIDEDNDTNNSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCDSKNSESDAGDSSPVTKESMAKKRKFSDFDGQLIAADTSLRALKRLAEAKIGFVSSDSSDGILSNEKFPRIKELKAKNETKIALAHQGFKVPSSDQLSIKLVDPVKLE 970
            A+ VG+N +REI    P   T++LL+DL  YK    K VS AARSLITLFR V P LL +KDRG+P    D       F    V   + G E+L                       D    E+     D   SE D S  D + +D D+D +  +                                 + K+ E+DA   S    E +  + +  D + ++  +D     +   AE +   V  ++S+ +   EK P++K   +KN     +  + FK   + QL  +L+   +L+
Sbjct:  436 AMTVGINAIREILSNCPFAATEELLRDLSEYKTYKNKNVSMAARSLITLFRAVNPKLLARKDRGKPQEKDDEDEEYNGFARPKVHDFISGAEILDE---------------------DAADGEQGHLEEDGTDSELDVSDVDTDDVDTDDDADEPV---------------------------AKKKRVEQKSVENDA--ESDADDEEIEDEEEMDDEEEEIEISDEEEEEIDDEAEEE-AVVEEEASEAV---EKDPKLK--ASKNSMDRIMTQEDFKNIKAYQLKKQLIGEKRLK 676          
BLAST of DY263061 vs. ExPASy Swiss-Prot
Match: SDA1_DICDI (Protein SDA1 homolog OS=Dictyostelium discoideum GN=sdad1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.804e-13
Identity = 45/146 (30.82%), Postives = 75/146 (51.37%), Query Frame = 2
Query:   95 IAVGLNVVREICLRMPLLMTDDLLQDLVLYKKSHEKAVSAAARSLITLFREVCPSLLVKKDRGRPTDPKARPRAFGEVSVASNVPGVELLQXXXXXXXXXXXXXXXXXXKENIDTDGDEENQFSGDAIGSEDDDSGDDNAIDEDND 532
            IA+GLN +R IC R PL +   LL DL+ Y++  EK V+ A++SL+  F++  PS+L KK+RG+         AFG   V+  + G++LL                    ++ D+D D +++   D   +  DD  +   + +D+D
Sbjct:  392 IAIGLNTIRSICSRCPLAIDTVLLADLIQYREKKEKGVAMASKSLLQFFKDNYPSMLPKKERGK-NKTDIGLLAFGHQKVSQGIDGLDLLMDEELNARLDAIEAGEEFESDD-DSDSDSDDEGWEDVNTTTADDDNNSEWVSDDDD 535          
The following BLAST results are available for this feature:
BLAST of DY263061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
SDA1_YEAST9.564e-1534.38Protein SDA1 OS=Saccharomyces cerevisiae GN=SDA1 P... [more]
SDA1_CAEEL2.783e-1426.26Protein SDA1 homolog OS=Caenorhabditis elegans GN=... [more]
SDA1_DICDI1.804e-1330.82Protein SDA1 homolog OS=Dictyostelium discoideum G... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CH01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263061 ID=DY263061; Name=DY263061; organism=Citrus clementina; type=EST; length=1175bp
CACGATCGTTCACGTACAGAGGTATAGCTGCTTCATATTTTGTTTTCAAT
GAATGACAGATTGACTTATCATTTACATTTGCTTGTTTTAGGCAATTGCT
GTTGGACTGAATGTTGTTAGGGAAATATGCTTGCGCATGCCATTGTTGAT
GACAGACGATTTGCTGCAAGATCTTGTATTATATAAGAAATCACATGAGA
AGGCAGTTTCAGCAGCTGCTCGATCACTTATAACTTTGTTCAGAGAGGTG
TGCCCTTCTTTACTGGTCAAGAAGGATCGTGGCCGCCCCACTGACCCCAA
GGCCAGGCCTAGAGCATTCGGGGAAGTCAGTGTTGCTAGCAATGTTCCTG
GTGTTGAGTTACTACAAGATGGTGATGGAAATGAATCTGCCTCTGATGGC
TCTGATGATGATAATGATAATAAAGAGAATATTGACACTGATGGTGATGA
AGAAAACCAGTTTTCTGGTGATGCTATTGGAAGTGAGGATGATGATAGTG
GAGATGACAATGCAATAGATGAAGACAATGATACTAATAATAGTATTGAA
GATGATAGTGGTGTCAGTGAAGATGATCTCGATGGTGATGACGATGAAGA
AGAGGAGTTAGAGGCAGAGGATGTTGATGAGCTTGAAGAAGGTTGTGATT
CTAAAAACAGTGAAAGTGATGCCGGGGACAGCAGTCCAGTGACCAAAGAA
TCTATGGCAAAAAAGAGGAAGTTTTCTGATTTTGATGGTCAGCTTATTGC
TGCTGACACAAGTCTTCGAGCTCTGAAGAGATTGGCAGAAGCAAAAATAG
GCTTTGTGTCCTCTGACTCAAGTGATGGCATTCTTTCTAATGAAAAATTC
CCGAGGATCAAAGAACTAAAGGCAAAGAACGAAACTAAAATTGCTTTGGC
TCACCAAGGGTTTAAGGTTCCAAGTTCTGATCAACTGAGCATTAAGCTTG
TGGACCCCGTCAAGCTTGAACCTCATGTACGGCCAAAGTTAACAAAAAAG
AAAAGGCTTGCATAATAAAAAACAGGGAGGGAAAACGAAAGGAAATTAAA
TGGCTCCGGCCTGCTTTTAACAAAAAAAAAACCGGGGGGTTTTGGACAAT
TCTCTAAAAAAAAAACAAAAAAGGCTTTTCCCCCCTTTCTTCCAAAAAAA
AACCCAAAATTGCCCAAAAAACCCC
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