DY263099

Overview
NameDY263099
Unique NameDY263099
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1175
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263099 vs. ExPASy Swiss-Prot
Match: STAM2_CHICK (Signal transducing adapter molecule 2 OS=Gallus gallus GN=STAM2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.199e-14
Identity = 51/142 (35.92%), Postives = 71/142 (50.00%), Query Frame = 3
Query:  243 VDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRLQHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGEMVKIVKKKPDMQLRDKILVLLDSWQEAFGGPGGKHPQ---YYWAYEDLRRYGVQFPKRSPDA 659
            V+KAT+E   S DW + +DICD + S    AKD +KA+ +R+ HK   V L ALTLL   V NCG   H ++  R+   E   I+ K    ++ +K+  L+  W E F     K PQ        + L+  GV FP     A
Sbjct:   13 VEKATNEHNNSEDWGLIMDICDKVGSTPNGAKDCLKAIMRRVNHKVPHVALQALTLLGACVSNCGRIFHLEVCSRDFATEARGIINKAHG-KVSEKLKTLMVEWSEEF----QKDPQCSLISATIKSLKEEGVTFPAAGSQA 149          
BLAST of DY263099 vs. ExPASy Swiss-Prot
Match: STAM1_MOUSE (Signal transducing adapter molecule 1 OS=Mus musculus GN=Stam PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 8.096e-14
Identity = 47/143 (32.87%), Postives = 73/143 (51.05%), Query Frame = 3
Query:  243 VDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRLQHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGEMVKIVKKKPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYW---AYEDLRRYGVQFPKRSPDAA 662
            V+KATSEL  + DW + +DICD +   +   KD ++++ +R+ HK+  V + ALTLL   V NCG   H ++  R+   E V  V  K   ++ +K+  L+  W + F       PQ        ++L+  GV FP     AA
Sbjct:   13 VEKATSELNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASE-VSNVLNKGHPKVCEKLKALMVEWTDEF----KNDPQLSLISAMIKNLKEQGVTFPAIGSQAA 150          
BLAST of DY263099 vs. ExPASy Swiss-Prot
Match: STAM1_HUMAN (Signal transducing adapter molecule 1 OS=Homo sapiens GN=STAM PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 1.381e-13
Identity = 46/143 (32.17%), Postives = 73/143 (51.05%), Query Frame = 3
Query:  243 VDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRLQHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGEMVKIVKKKPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYW---AYEDLRRYGVQFPKRSPDAA 662
            V+KATSE+  + DW + +DICD +   +   KD ++++ +R+ HK+  V + ALTLL   V NCG   H ++  R+   E V  V  K   ++ +K+  L+  W + F       PQ        ++L+  GV FP     AA
Sbjct:   13 VEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASE-VSNVLNKGHPKVCEKLKALMVEWTDEF----KNDPQLSLISAMIKNLKEQGVTFPAIGSQAA 150          
BLAST of DY263099 vs. ExPASy Swiss-Prot
Match: HSE1_PHANO (Class E vacuolar protein-sorting machinery protein HSE1 OS=Phaeosphaeria nodorum GN=HSE1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.804e-13
Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = 3
Query:  243 VDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRLQHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGEMVKIVKKKPDMQ-LRDKILVLLDSWQEAF 566
            V KAT E L S +W   +D+CD + S    AKD V A+ KRL H+N+ VQL  L L   + +NCG  +H ++A R+    M+++   +   Q ++ KIL  +  W E F
Sbjct:   13 VVKATDENLTSENWEYILDVCDKVGSSDTGAKDAVAAMIKRLAHRNANVQLYTLELANALSQNCGIQMHKELASRSFTDAMLRLANDRNTHQAVKAKILERMGEWSEMF 121          
BLAST of DY263099 vs. ExPASy Swiss-Prot
Match: VPS27_NEUCR (Vacuolar protein sorting-associated protein 27 OS=Neurospora crassa GN=vps-27 PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 2.356e-13
Identity = 51/140 (36.43%), Postives = 75/140 (53.57%), Query Frame = 3
Query:  243 VDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRLQHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGEMVKIVK----KKPDMQLRDKILVLLDSWQEAFGGPGGKHPQYYW-AYEDLRRYGVQFPKR 647
            ++KATS  L   D  +N++I D I S   Q K+ ++++KKR+ HKN   QL AL L +T VKN G     +IA R  +  +V ++K      P+  +R+KIL L+ SW  A    G     Y    Y+ L+R G  FP +
Sbjct:   17 IEKATSSSL--EDIALNLEISDVIRSKTVQPKEAMRSLKKRINHKNPNTQLSALNLTDTCVKNGGAHFLAEIASREFMENLVGLLKAVGPAAPNPDVRNKILDLIQSW--AMAAEGRYELSYIGEVYKTLQREGYSFPPK 152          
BLAST of DY263099 vs. ExPASy Swiss-Prot
Match: TM1L1_HUMAN (TOM1-like protein 1 OS=Homo sapiens GN=TOM1L1 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 2.356e-13
Identity = 67/216 (31.02%), Postives = 107/216 (49.54%), Query Frame = 3
Query:  243 VDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRL-QHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGE-MVKIVKKKPDMQL--RDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYGVQFP--------KRSPDAAPIFTPPVSHPTLGQAQASYGMPSNSSRRLDETMATEVETLSFSSLDSMRDVMELLSDMLQAVNP 854
            ++KAT   + + DW   + ICD IN+ Q   KD VKA+KKR+ ++ N K   L L+L++  V+NCG      I ++  + E +VK++  + ++ L  +++IL  + +W + F G G    +    Y DL + GVQFP         R   A     PP S PT   A +S   P NS+     T+  E      S LD ++  + ++S +L    P
Sbjct:   19 IEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPG-GVDVSEVKEVYLDLVKKGVQFPPSEAEAETARQETAQISSNPPTSVPT-APALSSVIAPKNST----VTLVPEQIGKLHSELDMVKMNVRVMSAILMENTP 228          
BLAST of DY263099 vs. ExPASy Swiss-Prot
Match: VPS27_USTMA (Vacuolar protein sorting-associated protein 27 OS=Ustilago maydis GN=VPS27 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.018e-13
Identity = 47/150 (31.33%), Postives = 78/150 (52.00%), Query Frame = 3
Query:  234 TVAVDKATSELLI--SPDWTMNIDICDSINSHQWQAKDVVKAVKKRLQHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGEMVKIVKKKPDM--QLRDKILVLLDSWQEAFGGPGGKHPQYYWAYEDLRRYG-VQFPKRSPDAAPI 668
            T  V+KATSE+L   S D  +N++ICD + + Q  AK  ++ +K+RL HKN  V LLAL L +  +KN GD    Q+A R  +  ++ +++    +   +++K L L+ +W +               Y+ L+      FP   P+AA +
Sbjct:   14 TEQVEKATSEMLPVGSEDIALNLEICDQVRAKQVPAKQAMQVLKRRLSHKNPNVVLLALGLTDICIKNGGDHFLQQVASREFMDNLLSVLRNPAGVNNDVKNKALGLIQNWSQIAQAKPAHMSYITDIYQQLKSDDQFDFPPLDPNAAAV 163          
BLAST of DY263099 vs. ExPASy Swiss-Prot
Match: VPS27_CHAGB (Vacuolar protein sorting-associated protein 27 OS=Chaetomium globosum GN=VPS27 PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 4.018e-13
Identity = 52/141 (36.88%), Postives = 77/141 (54.61%), Query Frame = 3
Query:  243 VDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRLQHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGEMVKIVKK----KPDMQLRDKILVLLDSWQEAFGGPGGKHPQYY--WAYEDLRRYGVQFPKR 647
            +DKATS  L   D  +N++I D I S   Q K+ ++++KKR+ +KN   QL AL L +T VKN G     +IA R  +  +V ++K       + ++R KIL L+ SW  A     G++   Y    Y+ L+R G QFP R
Sbjct:   17 IDKATSSSL--EDIALNLEISDIIRSKTVQPKEAMRSLKKRINNKNPNTQLSALNLTDTCVKNGGAHFLAEIASREFMESLVSLLKAVGPGTVNAEVRAKILELIQSWATA---AEGRYELGYIGEVYKTLQREGYQFPPR 152          
BLAST of DY263099 vs. ExPASy Swiss-Prot
Match: VPS27_PHANO (Vacuolar protein sorting-associated protein 27 OS=Phaeosphaeria nodorum GN=VPS27 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.169e-12
Identity = 49/140 (35.00%), Postives = 74/140 (52.86%), Query Frame = 3
Query:  243 VDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRLQHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGEMVKIVKK----KPDMQLRDKILVLLDSWQEAFGGPGGKHPQYY-WAYEDLRRYGVQFPKR 647
            +++ATS  L   D  +N++I D I S   Q KD +K++KKR+ HKN  VQL  L L +T VKN G     +IA R  +  +  ++K      P+  +++K+L L+ SW  A    G  +  Y    Y  L+R G  FP +
Sbjct:   17 IERATSSSL--EDMPLNLEISDVIRSKTVQPKDAMKSLKKRIGHKNPNVQLATLNLTDTCVKNGGAHFIQEIASREFMDNLTSLLKAPSTIAPNNDVKNKMLELIQSW--ATAAEGRMNLGYINEVYRSLQREGYHFPPK 152          
BLAST of DY263099 vs. ExPASy Swiss-Prot
Match: HSE1_COCIM (Class E vacuolar protein-sorting machinery protein HSE1 OS=Coccidioides immitis GN=HSE1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.169e-12
Identity = 36/109 (33.03%), Postives = 62/109 (56.88%), Query Frame = 3
Query:  243 VDKATSELLISPDWTMNIDICDSINSHQWQAKDVVKAVKKRLQHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGEMVKIVK-KKPDMQLRDKILVLLDSWQEAF 566
            V KAT E L S +W   +D+CD +++ +  AKD V ++ KRL H+N+ VQL    L   + +NCG   H ++A ++    ++++   +    Q++ KIL  ++ W E F
Sbjct:   13 VAKATDENLTSENWEYILDVCDKVSADESGAKDAVASMIKRLAHRNANVQLYTFELANALSQNCGPKAHRELASKSFTDALLRLANDRNTHPQVKSKILEHMEQWTEMF 121          
The following BLAST results are available for this feature:
BLAST of DY263099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
STAM2_CHICK6.199e-1435.92Signal transducing adapter molecule 2 OS=Gallus ga... [more]
STAM1_MOUSE8.096e-1432.87Signal transducing adapter molecule 1 OS=Mus muscu... [more]
STAM1_HUMAN1.381e-1332.17Signal transducing adapter molecule 1 OS=Homo sapi... [more]
HSE1_PHANO1.804e-1337.61Class E vacuolar protein-sorting machinery protein... [more]
VPS27_NEUCR2.356e-1336.43Vacuolar protein sorting-associated protein 27 OS=... [more]
TM1L1_HUMAN2.356e-1331.02TOM1-like protein 1 OS=Homo sapiens GN=TOM1L1 PE=1... [more]
VPS27_USTMA4.018e-1331.33Vacuolar protein sorting-associated protein 27 OS=... [more]
VPS27_CHAGB4.018e-1336.88Vacuolar protein sorting-associated protein 27 OS=... [more]
VPS27_PHANO1.169e-1235.00Vacuolar protein sorting-associated protein 27 OS=... [more]
HSE1_COCIM1.169e-1233.03Class E vacuolar protein-sorting machinery protein... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10DC05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263099 ID=DY263099; Name=DY263099; organism=Citrus clementina; type=EST; length=1175bp
ATAACGTNTGAAGGTAAAAAAAAAAAAAAGAATATATAAATTCTNTTGAG
CTTGAAAGCATTCATTGGGCGGTGTATTTTTCTTGGACCGAATTTTCTCG
TTAAACAAACAAACAAACAAACAAACAGGAAAAAGTTTTCATTTTCTTTT
TCTGTTATCTAATTTGGAGGGAGAGATAGAGAGTAAAGATGATGTCGTCA
TCGTCGTCGTCGTCGTCGTCGTCGTCTTCGGCGACTGTGGCAGTTGACAA
GGCGACCAGCGAGCTTTTGATTAGTCCTGATTGGACTATGAACATCGATA
TCTGTGATTCCATCAATTCTCATCAGTGGCAGGCGAAAGATGTTGTGAAA
GCAGTGAAGAAAAGGTTACAGCACAAGAACTCAAAAGTGCAACTTCTTGC
GTTGACGCTTTTAGAGACGATGGTGAAGAATTGTGGTGATTTTGTTCATT
TTCAAATTGCTGAGAGGAATGTCTTGGGAGAGATGGTTAAAATTGTGAAG
AAGAAGCCAGATATGCAGCTGAGGGATAAAATCTTGGTTTTATTAGATTC
TTGGCAAGAGGCATTCGGTGGACCTGGGGGAAAACATCCTCAGTACTACT
GGGCTTATGAGGATTTAAGGCGTTATGGAGTACAATTTCCCAAGCGTTCA
CCAGATGCTGCTCCTATATTTACACCTCCTGTTTCCCACCCCACTCTAGG
ACAAGCTCAAGCTAGTTATGGAATGCCTAGCAATTCCTCAAGAAGGCTTG
ACGAAACAATGGCGACAGAGGTTGAAACTTTAAGTTTTTCAAGCTTGGAT
TCTATGCGAGATGTTATGGAGCTGTTAAGTGACATGCTGCAAGCTGTAAA
TCCTAGCGACCGTGAGGCAGTAAAGATGAGGTAATTGTTGATCTCGTCAG
TCGGTGTCGGTCCATCAAAAAAACTCATGCAGATGCTACTACACCCGGGG
ATGAGGAACTTTCTGCCGGGGTCTTGAATAAAGGACATTCTGGAAACTTT
GCTGCAAAAATGACGCTAAAACATCTGGTTTGCCATAACAACGGAATTAC
AAATTAATTCCAAACCAATGAAAAAATGCCCGCACCAACCCCAAAACAAC
GGAGCCTGGGAATCGAGCCCAAAACATAAGGGAACCCCCCCGCCCCGGTT
GTGTAGGTGGAAGAGGGCCCCATCT
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