DY263099

Overview
NameDY263099
Unique NameDY263099
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1175
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY263099 vs. ExPASy Swiss-Prot
Match: GGA2_YEAST (ADP-ribosylation factor-binding protein GGA2 OS=Saccharomyces cerevisiae GN=GGA2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.415e-11
Identity = 50/167 (29.94%), Postives = 76/167 (45.51%), Query Frame = 3 
Query:  243 VDKATSELLISPDWTMNIDICDSINSHQWQA-KDVVKAVKKRLQHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGEMVKIVKKKPDM---QLRDKILVLLDSWQEAFGGPGGKHPQY---YWAYEDLRRY----GVQFPKRSPDAAPIFTPPVSHPTLGQAQ 710
            + +A    L  PD  +N+DI D IN  Q  A +D   A+ K + ++ S V + AL+LL+ +VKNCG   H QI+ +  L E+VK     P +   +++  IL  ++ W +       KH  Y        D+ R     G  FPK S     +  P     T  + Q
Sbjct:   30 IQRACRMSLAEPDLALNLDIADYINEKQGAAPRDAAIALAKLINNRESHVAIFALSLLDVLVKNCGYPFHLQISRKEFLNELVKRFPGHPPLRYSKIQRLILTAIEEWYQTI----CKHSSYKNDMGYIRDMHRLLKYKGYAFPKISESDLAVLKPSNQLKTASEIQ 192
[Close]
BLAST of DY263099 vs. ExPASy Swiss-Prot
Match: GGA1_YEAST (ADP-ribosylation factor-binding protein GGA1 OS=Saccharomyces cerevisiae GN=GGA1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.378e-11
Identity = 54/210 (25.71%), Postives = 97/210 (46.19%), Query Frame = 3 
Query:  243 VDKATSELLISPDWTMNIDICDSINSHQWQA-KDVVKAVKKRLQHKNSKVQLLALTLLETMVKNCGDFVHFQIAERNVLGEMVKIVKKKPDM---QLRDKILVLLDSWQEAFGGPGGKHP------QYYWAYEDLRRY-GVQFPKRSPDAAPIFTPPVSHPTLGQAQASYGMPSNSSRRLDETMATEVETLSFSSL-DSMRDVMELLSDM 836
            + +A    L  PD  +N+D+ D INS Q    ++ V A++K + + +++  + AL+LL+ +VKNCG  +H QI+ +  L ++VK   ++P +   +++  IL  ++ W +       KH       QY      L +Y G  FPK   +   +  P     T          PS      +   A ++E L  S   D +++  +L+  M
Sbjct:   26 IQRACRSTLPEPDLGLNLDVADYINSKQGATPREAVLAIEKLVNNGDTQAAVFALSLLDVLVKNCGYSIHLQISRKEFLNDLVKRFPEQPPLRYSKVQQMILEAIEEWYQTI----CKHASYKDDLQYINDMHKLLKYKGYTFPKVGSENLAVLRPNDQLRT----------PSELQEEQERAQAAKLEELLRSGKPDDLKEANKLMKIM 221
The following BLAST results are available for this feature:
BLAST of DY263099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
GGA2_YEAST6.415e-1129.94ADP-ribosylation factor-binding protein GGA2 OS=Sa... [more]
GGA1_YEAST8.378e-1125.71ADP-ribosylation factor-binding protein GGA1 OS=Sa... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10DC05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263099 ID=DY263099; Name=DY263099; organism=Citrus clementina; type=EST; length=1175bp
ATAACGTNTGAAGGTAAAAAAAAAAAAAAGAATATATAAATTCTNTTGAG
CTTGAAAGCATTCATTGGGCGGTGTATTTTTCTTGGACCGAATTTTCTCG
TTAAACAAACAAACAAACAAACAAACAGGAAAAAGTTTTCATTTTCTTTT
TCTGTTATCTAATTTGGAGGGAGAGATAGAGAGTAAAGATGATGTCGTCA
TCGTCGTCGTCGTCGTCGTCGTCGTCTTCGGCGACTGTGGCAGTTGACAA
GGCGACCAGCGAGCTTTTGATTAGTCCTGATTGGACTATGAACATCGATA
TCTGTGATTCCATCAATTCTCATCAGTGGCAGGCGAAAGATGTTGTGAAA
GCAGTGAAGAAAAGGTTACAGCACAAGAACTCAAAAGTGCAACTTCTTGC
GTTGACGCTTTTAGAGACGATGGTGAAGAATTGTGGTGATTTTGTTCATT
TTCAAATTGCTGAGAGGAATGTCTTGGGAGAGATGGTTAAAATTGTGAAG
AAGAAGCCAGATATGCAGCTGAGGGATAAAATCTTGGTTTTATTAGATTC
TTGGCAAGAGGCATTCGGTGGACCTGGGGGAAAACATCCTCAGTACTACT
GGGCTTATGAGGATTTAAGGCGTTATGGAGTACAATTTCCCAAGCGTTCA
CCAGATGCTGCTCCTATATTTACACCTCCTGTTTCCCACCCCACTCTAGG
ACAAGCTCAAGCTAGTTATGGAATGCCTAGCAATTCCTCAAGAAGGCTTG
ACGAAACAATGGCGACAGAGGTTGAAACTTTAAGTTTTTCAAGCTTGGAT
TCTATGCGAGATGTTATGGAGCTGTTAAGTGACATGCTGCAAGCTGTAAA
TCCTAGCGACCGTGAGGCAGTAAAGATGAGGTAATTGTTGATCTCGTCAG
TCGGTGTCGGTCCATCAAAAAAACTCATGCAGATGCTACTACACCCGGGG
ATGAGGAACTTTCTGCCGGGGTCTTGAATAAAGGACATTCTGGAAACTTT
GCTGCAAAAATGACGCTAAAACATCTGGTTTGCCATAACAACGGAATTAC
AAATTAATTCCAAACCAATGAAAAAATGCCCGCACCAACCCCAAAACAAC
GGAGCCTGGGAATCGAGCCCAAAACATAAGGGAACCCCCCCGCCCCGGTT
GTGTAGGTGGAAGAGGGCCCCATCT
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