DY263104
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFRS1_XENTR (Splicing factor, arginine/serine-rich 1 OS=Xenopus tropicalis GN=sfrs1 PE=2 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 5.319e-41 Identity = 91/198 (45.96%), Postives = 118/198 (59.60%), Query Frame = 1 Query: 79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL----------------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 603 +YVGNLP DIR +++ED+FYKYG I IDLK P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE EYRV+V+GLP S SWQDLKDHMR AGDVC++ VFRDG TG+V++ +DM +A++KLD+++FR + AY+RV+ Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 212
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFRS9_MOUSE (Splicing factor, arginine/serine-rich 9 OS=Mus musculus GN=Sfrs9 PE=1 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 4.660e-37 Identity = 84/175 (48.00%), Postives = 112/175 (64.00%), Query Frame = 1 Query: 79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRV 600 +YVGNLP D+RE+++EDLFYKYG I I+LK +AFV FE+ RDAEDAI GR+GYD+ RLRVE ++RVLV+GLP S SWQDLKDHMR AGDVC++ V +DG G+V+Y +DM++A++KLDD++FR + +Y+RV Sbjct: 17 IYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEF-----PRTYGGRGGWPRGARNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG---MGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV 183
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFRS9_HUMAN (Splicing factor, arginine/serine-rich 9 OS=Homo sapiens GN=SFRS9 PE=1 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 6.086e-37 Identity = 84/175 (48.00%), Postives = 112/175 (64.00%), Query Frame = 1 Query: 79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRV 600 +YVGNLP D+RE+++EDLFYKYG I I+LK +AFV FE+ RDAEDAI GR+GYD+ RLRVE ++RVLV+GLP S SWQDLKDHMR AGDVC++ V +DG G+V+Y +DM++A++KLDD++FR + +Y+RV Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEF-----PRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG---VGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV 182
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFRS9_RAT (Splicing factor, arginine/serine-rich 9 OS=Rattus norvegicus GN=Sfrs9 PE=1 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 7.948e-37 Identity = 84/175 (48.00%), Postives = 112/175 (64.00%), Query Frame = 1 Query: 79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRV 600 +YVGNLP D+RE+++EDLFYKYG I I+LK +AFV FE+ RDAEDAI GR+GYD+ RLRVE ++RVLV+GLP S SWQDLKDHMR AGDVC++ V +DG G+V+Y +DM++A++KLDD++FR + +Y+RV Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEF-----PRAYGGRGGWPRASRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG---MGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV 182
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFRS4_MOUSE (Splicing factor, arginine/serine-rich 4 OS=Mus musculus GN=Sfrs4 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 5.530e-22 Identity = 62/167 (37.13%), Postives = 88/167 (52.69%), Query Frame = 1 Query: 79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXX-----EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE 564 +Y+G L RER+VE F YG I +DLK GY FVEF++ RDA+DA+ +G D G R+ VE A EYR++V L S SWQDLKD+MR+AG+V ++ + G G++++ +Y DMK A++KLD +E Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHK-GRKNEGVIEFVSYSDMKRALEKLDGTE 164
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFRS4_HUMAN (Splicing factor, arginine/serine-rich 4 OS=Homo sapiens GN=SFRS4 PE=1 SV=2) HSP 1 Score: 105.916 bits (263), Expect = 5.530e-22 Identity = 62/167 (37.13%), Postives = 88/167 (52.69%), Query Frame = 1 Query: 79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXX-----EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE 564 +Y+G L RER+VE F YG I +DLK GY FVEF++ RDA+DA+ +G D G R+ VE A EYR++V L S SWQDLKD+MR+AG+V ++ + G G++++ +Y DMK A++KLD +E Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHK-GRKNEGVIEFVSYSDMKRALEKLDGTE 164
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFRS6_HUMAN (Splicing factor, arginine/serine-rich 6 OS=Homo sapiens GN=SFRS6 PE=1 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 1.779e-20 Identity = 61/192 (31.77%), Postives = 94/192 (48.96%), Query Frame = 1 Query: 79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHRR 621 +Y+G L ++RE++++ F YG + +DLK GY FVEFE++RDA+DA+ +G + G R+ VE A EYR++V L S SWQDLKD MR+AG+V ++ ++ + G++++ +Y DMK A+ KLD +E R HRR Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLK-----NGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERT-NEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIEDKPRTSHRR 189
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFRS6_BOVIN (Splicing factor, arginine/serine-rich 6 OS=Bos taurus GN=SFRS6 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 6.760e-20 Identity = 61/192 (31.77%), Postives = 94/192 (48.96%), Query Frame = 1 Query: 79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHRR 621 +Y+G L ++RE++++ F YG + IDLK GY FVEFE++RDA+DA+ +G + G R+ VE A E+R++V L S SWQDLKD MR+AG+V ++ ++ + G++++ +Y DMK A+ KLD +E R HRR Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLGIDLK-----NGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERT-NEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIEDKPRTSHRR 189
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFRS5_RAT (Splicing factor, arginine/serine-rich 5 OS=Rattus norvegicus GN=Sfrs5 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.409e-17 Identity = 59/169 (34.91%), Postives = 83/169 (49.11%), Query Frame = 1 Query: 79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXX-------EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE 564 +++G L RE++VE F YG I IDLK G+ FVEFE+ RDA+DA+ DG + R+ +E A E R++V L S SWQDLKD MR+AG+V F+ R G+V++ +Y D+K+AI+KL E Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRP-KLNEGVVEFASYGDLKNAIEKLSGKE 168
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFRS5_HUMAN (Splicing factor, arginine/serine-rich 5 OS=Homo sapiens GN=SFRS5 PE=1 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.409e-17 Identity = 59/169 (34.91%), Postives = 83/169 (49.11%), Query Frame = 1 Query: 79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXX-------EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE 564 +++G L RE++VE F YG I IDLK G+ FVEFE+ RDA+DA+ DG + R+ +E A E R++V L S SWQDLKD MR+AG+V F+ R G+V++ +Y D+K+AI+KL E Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRP-KLNEGVVEFASYGDLKNAIEKLSGKE 168 The following BLAST results are available for this feature:
BLAST of DY263104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
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Sequences
The
following sequences are available for this feature:
EST sequence >DY263104 ID=DY263104; Name=DY263104; organism=Citrus clementina; type=EST; length=1318bpback to top |