DY263104

Overview
NameDY263104
Unique NameDY263104
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1318
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFRS1_XENTR (Splicing factor, arginine/serine-rich 1 OS=Xenopus tropicalis GN=sfrs1 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 5.319e-41
Identity = 91/198 (45.96%), Postives = 118/198 (59.60%), Query Frame = 1
Query:   79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVEL----------------------AXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRVR 603
            +YVGNLP DIR +++ED+FYKYG I  IDLK     P +AFVEFE+ RDAEDA+ GRDGYD+DG+RLRVE                                                   EYRV+V+GLP S SWQDLKDHMR AGDVC++ VFRDG   TG+V++   +DM +A++KLD+++FR +    AY+RV+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRDG---TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 212          
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFRS9_MOUSE (Splicing factor, arginine/serine-rich 9 OS=Mus musculus GN=Sfrs9 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 4.660e-37
Identity = 84/175 (48.00%), Postives = 112/175 (64.00%), Query Frame = 1
Query:   79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRV 600
            +YVGNLP D+RE+++EDLFYKYG I  I+LK       +AFV FE+ RDAEDAI GR+GYD+   RLRVE                             ++RVLV+GLP S SWQDLKDHMR AGDVC++ V +DG    G+V+Y   +DM++A++KLDD++FR +    +Y+RV
Sbjct:   17 IYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEF-----PRTYGGRGGWPRGARNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG---MGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV 183          
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFRS9_HUMAN (Splicing factor, arginine/serine-rich 9 OS=Homo sapiens GN=SFRS9 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 6.086e-37
Identity = 84/175 (48.00%), Postives = 112/175 (64.00%), Query Frame = 1
Query:   79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRV 600
            +YVGNLP D+RE+++EDLFYKYG I  I+LK       +AFV FE+ RDAEDAI GR+GYD+   RLRVE                             ++RVLV+GLP S SWQDLKDHMR AGDVC++ V +DG    G+V+Y   +DM++A++KLDD++FR +    +Y+RV
Sbjct:   16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEF-----PRTYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG---VGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV 182          
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFRS9_RAT (Splicing factor, arginine/serine-rich 9 OS=Rattus norvegicus GN=Sfrs9 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 7.948e-37
Identity = 84/175 (48.00%), Postives = 112/175 (64.00%), Query Frame = 1
Query:   79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFR-NAFSRAYVRV 600
            +YVGNLP D+RE+++EDLFYKYG I  I+LK       +AFV FE+ RDAEDAI GR+GYD+   RLRVE                             ++RVLV+GLP S SWQDLKDHMR AGDVC++ V +DG    G+V+Y   +DM++A++KLDD++FR +    +Y+RV
Sbjct:   16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEF-----PRAYGGRGGWPRASRNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG---MGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV 182          
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFRS4_MOUSE (Splicing factor, arginine/serine-rich 4 OS=Mus musculus GN=Sfrs4 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 5.530e-22
Identity = 62/167 (37.13%), Postives = 88/167 (52.69%), Query Frame = 1
Query:   79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXX-----EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE 564
            +Y+G L    RER+VE  F  YG I  +DLK      GY FVEF++ RDA+DA+   +G D  G R+ VE A                                EYR++V  L S  SWQDLKD+MR+AG+V ++   + G    G++++ +Y DMK A++KLD +E
Sbjct:    4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHK-GRKNEGVIEFVSYSDMKRALEKLDGTE 164          
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFRS4_HUMAN (Splicing factor, arginine/serine-rich 4 OS=Homo sapiens GN=SFRS4 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 5.530e-22
Identity = 62/167 (37.13%), Postives = 88/167 (52.69%), Query Frame = 1
Query:   79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXX-----EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE 564
            +Y+G L    RER+VE  F  YG I  +DLK      GY FVEF++ RDA+DA+   +G D  G R+ VE A                                EYR++V  L S  SWQDLKD+MR+AG+V ++   + G    G++++ +Y DMK A++KLD +E
Sbjct:    4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHK-GRKNEGVIEFVSYSDMKRALEKLDGTE 164          
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFRS6_HUMAN (Splicing factor, arginine/serine-rich 6 OS=Homo sapiens GN=SFRS6 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 1.779e-20
Identity = 61/192 (31.77%), Postives = 94/192 (48.96%), Query Frame = 1
Query:   79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHRR 621
            +Y+G L  ++RE++++  F  YG +  +DLK      GY FVEFE++RDA+DA+   +G +  G R+ VE A                                      EYR++V  L S  SWQDLKD MR+AG+V ++   ++ +   G++++ +Y DMK A+ KLD +E      R         HRR
Sbjct:    4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLK-----NGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERT-NEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIEDKPRTSHRR 189          
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFRS6_BOVIN (Splicing factor, arginine/serine-rich 6 OS=Bos taurus GN=SFRS6 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.760e-20
Identity = 61/192 (31.77%), Postives = 94/192 (48.96%), Query Frame = 1
Query:   79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHRR 621
            +Y+G L  ++RE++++  F  YG +  IDLK      GY FVEFE++RDA+DA+   +G +  G R+ VE A                                      E+R++V  L S  SWQDLKD MR+AG+V ++   ++ +   G++++ +Y DMK A+ KLD +E      R         HRR
Sbjct:    4 VYIGRLSYNVREKDIQRFFSGYGRLLGIDLK-----NGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERT-NEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIEDKPRTSHRR 189          
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFRS5_RAT (Splicing factor, arginine/serine-rich 5 OS=Rattus norvegicus GN=Sfrs5 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.409e-17
Identity = 59/169 (34.91%), Postives = 83/169 (49.11%), Query Frame = 1
Query:   79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXX-------EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE 564
            +++G L    RE++VE  F  YG I  IDLK      G+ FVEFE+ RDA+DA+   DG +    R+ +E A                                  E R++V  L S  SWQDLKD MR+AG+V F+   R      G+V++ +Y D+K+AI+KL   E
Sbjct:    6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRP-KLNEGVVEFASYGDLKNAIEKLSGKE 168          
BLAST of DY263104 vs. ExPASy Swiss-Prot
Match: SFRS5_HUMAN (Splicing factor, arginine/serine-rich 5 OS=Homo sapiens GN=SFRS5 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.409e-17
Identity = 59/169 (34.91%), Postives = 83/169 (49.11%), Query Frame = 1
Query:   79 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXX-------EYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSE 564
            +++G L    RE++VE  F  YG I  IDLK      G+ FVEFE+ RDA+DA+   DG +    R+ +E A                                  E R++V  L S  SWQDLKD MR+AG+V F+   R      G+V++ +Y D+K+AI+KL   E
Sbjct:    6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRP-KLNEGVVEFASYGDLKNAIEKLSGKE 168          
The following BLAST results are available for this feature:
BLAST of DY263104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
SFRS1_XENTR5.319e-4145.96Splicing factor, arginine/serine-rich 1 OS=Xenopus... [more]
SFRS9_MOUSE4.660e-3748.00Splicing factor, arginine/serine-rich 9 OS=Mus mus... [more]
SFRS9_HUMAN6.086e-3748.00Splicing factor, arginine/serine-rich 9 OS=Homo sa... [more]
SFRS9_RAT7.948e-3748.00Splicing factor, arginine/serine-rich 9 OS=Rattus ... [more]
SFRS4_MOUSE5.530e-2237.13Splicing factor, arginine/serine-rich 4 OS=Mus mus... [more]
SFRS4_HUMAN5.530e-2237.13Splicing factor, arginine/serine-rich 4 OS=Homo sa... [more]
SFRS6_HUMAN1.779e-2031.77Splicing factor, arginine/serine-rich 6 OS=Homo sa... [more]
SFRS6_BOVIN6.760e-2031.77Splicing factor, arginine/serine-rich 6 OS=Bos tau... [more]
SFRS5_RAT1.409e-1734.91Splicing factor, arginine/serine-rich 5 OS=Rattus ... [more]
SFRS5_HUMAN1.409e-1734.91Splicing factor, arginine/serine-rich 5 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10DC10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263104 ID=DY263104; Name=DY263104; organism=Citrus clementina; type=EST; length=1318bp
CGAAGCTCTTAGTCTTTGTGCACAACTATCGTTTAATCATCATTACAGGA
AAAAATGAGCAGCCGTGCAAGCAGAACTCTCTATGTTGGGAACCTGCCTG
GTGATATTCGGGAGAGAGAAGTGGAAGATCTGTTTTACAAGTATGGACCT
ATAGCCCACATTGACCTGAAGATCCCGCCAAGGCCTCCTGGTTATGCATT
TGTTGAGTTTGAAGAGGCTCGTGATGCTGAGGATGCAATTCGTGGTCGCG
ATGGCTATGATTTTGATGGGCATCGGTTACGGGTGGAACTTGCGCATGGT
GGGCGGGGCCGTTCATCATCTGATCGTCATAGTAGTCACAGCAGTGGCCG
AGGACGTGGAGTATCCAGGCGATCCGAATATCGTGTGTTAGTCACTGGAT
TACCCTCTTCTGCTTCATGGCAAGACCTTAAGGATCACATGCGTCGAGCA
GGAGATGTTTGTTTCTCACAAGTTTTTCGTGATGGCAGTGGCACAACTGG
CATTGTGGACTACACAAACTATGATGATATGAAGCATGCAATCAAAAAAC
TTGATGACTCTGAGTTTAGGAATGCATTTTCTCGGGCTTATGTTCGGGTG
AGGGAGTATGATCATAGACGTGATGGATCCCAGAGTCCTAGTCGTGGCCG
ATCTTATTCAAGAGGGCGGAGTGAGAGCCGAAGCCGCAGTCGCAGTCGTG
GCCGAAGTTACAGTCGGAGTCGTAGTCAGAGCAAGTCTCCAAAAGCCAAA
TCTTCACGCCGTTCTCCTGATAGATCCAGATCAAGGTCTGCTTCTCGCTC
ACGCTCTGGATCAAAGCCTCGCTCTTTGTCAAGATAATGGATATGTGCTG
CAAACTGGGAATTGGATATTAGGATCTTGATGGGATATTGTTCAATTGCT
TGCAACTCTTATGGGTGTAGAGATATGGAACAAAGGAGACAATGGATTGG
CATAATAAAGCTGGATTTCATTGAATTAGTGGCATTGGGATCTGGAATCT
CGATCAATGACCGGTGATACCATTTCCTTGCCATTTCCGCTTTACAATGG
CCAAGCTATTAGGACGTGCCTCCTGGATCCCCTTGGATATTTGGGTGGTA
AGTAGGGAAAGCTGGGTTTCCCCTTGGCCCCCGGGGTTCCTTAAAAAGGC
ATAATTCTTTTTAATAAGGGTTTTTTTTTTTTTGAAATTAGGGTTTTTTT
TTTGGGGGGGGGGGAAAATTTTTAGAAAATTAAAACTCCGAAAAATTTTT
TTGTGTTCTTGGGGGGGGAGGAGGCGGGTCTCGAAAAAAGATTTTTTTTT
TTTTTTTTTGTTGTGCCC
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