DY263115

Overview
NameDY263115
Unique NameDY263115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1228
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_PROM3 (Peptidyl-tRNA hydrolase OS=Prochlorococcus marinus (strain MIT 9303) GN=pth PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.544e-18
Identity = 63/193 (32.64%), Postives = 89/193 (46.11%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPK-----AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQ 882
            L VGLGNPG KY GTRHN+GF  +D  A  + +S            +  VG   V L  PQTYMN SG +      ++ L ++++LV  DDM LP G                +S + +  G ++F RLRIGIG P    + +     + +L  F+      +D  L E +  L L+   GL  +    N  Q
Sbjct:    8 LLVGLGNPGSKYVGTRHNIGFMALDKLAGQKSVSFRPQTKFHGLMAEVGVGSERVRLLMPQTYMNESGRAIRAAIDWFGLEVDQLLVLVDDMDLPLGRLRLRAQGSAGGHNGLRSAIQHL-GTQDFCRLRIGIGAPGCTSEERRARTVSHVLGVFSRQESLLVDQVLDEVLIGLDLIQCLGLERAGNRLNAFQ 199          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_LACCB (Peptidyl-tRNA hydrolase OS=Lactobacillus casei (strain BL23) GN=pth PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.544e-18
Identity = 52/169 (30.77%), Postives = 87/169 (51.48%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLK 828
            + VGLGNPG KY G++HN+GF ++D  A+   ++++ +   A      +    + L KPQT+MN SG +   L  +Y++ L+ + V  DDM L  G                K ++ +  G+ EF RL+IGI  P  Q     ++L  F+   +  ID A+++  + L+
Sbjct:    3 MIVGLGNPGQKYAGSKHNMGFMVVDGLAKRLNLTIDKLEFDAATATTRLNGEKIFLVKPQTFMNASGRAVRELMMFYQIQLDEIFVVQDDMDLTLGKLRLRKRGSAGGHNGIKDII-SATGSDEFCRLKIGIQHPQRQR-VVDWVLTPFSKTDQPLIDDAIEKADDALE 169          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_LACC3 (Peptidyl-tRNA hydrolase OS=Lactobacillus casei (strain ATCC 334) GN=pth PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.544e-18
Identity = 52/169 (30.77%), Postives = 87/169 (51.48%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLK 828
            + VGLGNPG KY G++HN+GF ++D  A+   ++++ +   A      +    + L KPQT+MN SG +   L  +Y++ L+ + V  DDM L  G                K ++ +  G+ EF RL+IGI  P  Q     ++L  F+   +  ID A+++  + L+
Sbjct:    3 MIVGLGNPGQKYAGSKHNMGFMVVDGLAKRLNLTIDKLEFDAATATTRLNGEKIFLVKPQTFMNASGRAVRELMMFYQIQLDEIFVVQDDMDLTLGKLRLRKRGSAGGHNGIKDII-SATGSDEFCRLKIGIQHPKRQR-VVDWVLTPFSKTDQPLIDDAIEKADDALE 169          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_AGRT5 (Peptidyl-tRNA hydrolase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=pth PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 7.544e-18
Identity = 55/161 (34.16%), Postives = 77/161 (47.83%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 804
            +  GLGNPG +Y G RHN+GF  +DA       +  +   KA   +G +G   VLL KP TYMNLSGES G    ++KL    ++  HD++ L  G                KS+  +    +E+ RLR+GIG P  +      +L  F    R  +D  L
Sbjct:    3 IIAGLGNPGAQYAGNRHNIGFMAVDALQRLPSFAPWSKKFKAEISEGEIGGEKVLLMKPLTYMNLSGESVGEAMRFFKLTPADIIAIHDELDLLAGRTRIKIGGGHGGHNGLKSL--DAHCGKEYRRLRLGIGHPGDKERVHGHVLGDFAKSDRVWLDPLL 161          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_RHOPT (Peptidyl-tRNA hydrolase OS=Rhodopseudomonas palustris (strain TIE-1) GN=pth PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.853e-18
Identity = 50/135 (37.04%), Postives = 71/135 (52.59%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRP 726
            LFVGLGNPG KY+G RHN+GF +ID  A   G S      +     G +    + L KP TYMN SG +    A++YK+  N + VFHD++ LP                  +S+  +  GN ++ R+R+G+G P
Sbjct:    3 LFVGLGNPGAKYQGNRHNIGFMVIDEIARRHGFSPWRRRFQGETADGVLDGERITLLKPLTYMNESGRAVQDAASFYKIGQNEIAVFHDEIELPPAKVRVKVGGGIAGHNGLRSISAHI-GN-DYLRVRLGVGHP 135          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_RHOPA (Peptidyl-tRNA hydrolase OS=Rhodopseudomonas palustris GN=pth PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.853e-18
Identity = 50/135 (37.04%), Postives = 71/135 (52.59%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRP 726
            LFVGLGNPG KY+G RHN+GF +ID  A   G S      +     G +    + L KP TYMN SG +    A++YK+  N + VFHD++ LP                  +S+  +  GN ++ R+R+G+G P
Sbjct:    3 LFVGLGNPGAKYQGNRHNIGFMVIDEIARRHGFSPWRRRFQGETADGVLDGERITLLKPLTYMNESGRAVQDAASFYKIGQNEIAVFHDEIELPPAKVRVKVGGGIAGHNGLRSISAHI-GN-DYLRVRLGVGHP 135          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_RALEH (Peptidyl-tRNA hydrolase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=pth PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.853e-18
Identity = 61/189 (32.28%), Postives = 92/189 (48.68%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRP--------PGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 861
            L VGLGNPG +Y+ TRHN GF ++D  A   G +M           +  + D  + L KP T+MN SG +   LA +YK+  + ++V HD+M LP G                K +  +    +++ RLR+G+G P         G+ D   F+L+      +E ID A+   +E L  LL++G  E A
Sbjct:    4 LIVGLGNPGAEYEATRHNAGFWLVDQLARMGGATMRVEGRFHGLAARARLWDQDIWLLKPSTFMNRSGLAVVSLARFYKVLPDEIVVAHDEMDLPAGAAKLKRGGGAGGHNGLKDISAHL-STQDYWRLRLGVGHPRNAPGGAGAGREDVVNFVLKPPRREEQEAIDAAIDRCIEPLG-LLARGDAERA 190          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_PSE14 (Peptidyl-tRNA hydrolase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=pth PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.853e-18
Identity = 57/175 (32.57%), Postives = 85/175 (48.57%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFG-------QGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVL 825
            L VGLGNPG +Y+ TRHN G   ++  A +Q +  N V  +  FG       QG      V L  P TYMN SG++   LA +Y++P+  +LV HD++ LP GV               + ++        F RLR+GIG P        F+L +     +E++D ++   + VL
Sbjct:    6 LIVGLGNPGAEYEQTRHNAGAFFVERIAAAQRV--NLVPERKFFGLTGRFTHQG----QDVRLLIPTTYMNRSGQAVAALAGFYRIPVESILVAHDELDLPPGVAKLKVGGGHGGHNGLRDIIAQLGNQNTFHRLRLGIGHPGDASKVSGFVLGRAPRAEQEKLDASIDFALGVL 174          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_MYCAP (Peptidyl-tRNA hydrolase OS=Mycoplasma agalactiae (strain PG2) GN=pth PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.853e-18
Identity = 61/192 (31.77%), Postives = 92/192 (47.92%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHI 897
            L VGLGNPG++Y+ TRHN GF  ID   E   IS+N    K  F   F      +LAKP TYMN SG+    +A++YK+  + ++V +DD+    G                + +M+ F  N +F R+R+GIG   G    K ++L  F       ++  L++  +    L+   +      FNT  K + I
Sbjct:    3 LIVGLGNPGNEYRFTRHNAGFLAIDKICEKLNISLN----KEKFNGEFAVSDGFILAKPLTYMNKSGDFVYSIASFYKINPSDIIVIYDDLSFSIGQAAIKIGGSSAGHKGIERLMSKFSSN-DFKRIRVGIGVNSG-TTIKDYVLSLFTKDEMIVVEEVLEKVADAAISLVYNDVNFVMNKFNTDNKKRVI 188          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_LACDB (Peptidyl-tRNA hydrolase OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=pth PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.853e-18
Identity = 51/168 (30.36%), Postives = 88/168 (52.38%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVL 825
            L V LGNPG KY+ T+HN GF  +D + + +G+ ++     A + +  V    V+  +PQTYMN SG + G  A ++K+  + +LV HDDM +P                  KS++    G  +F RL+IGI R P +    +++L  FN   ++ ++ +  +  +++
Sbjct:    3 LIVALGNPGLKYEKTKHNTGFMALDHYLDEKGLRLDRDKFTALYAKEKVAGEDVIFMEPQTYMNESGRAVGAAAKFFKIDPSDILVIHDDMDMPIAKLRIRAGGKSGGHNGIKSIIACL-GTEKFNRLKIGI-RHPDKQSVVSWVLTPFNPDQQKELEASFAKVDQII 168          
The following BLAST results are available for this feature:
BLAST of DY263115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_PROM37.544e-1832.64Peptidyl-tRNA hydrolase OS=Prochlorococcus marinus... [more]
PTH_LACCB7.544e-1830.77Peptidyl-tRNA hydrolase OS=Lactobacillus casei (st... [more]
PTH_LACC37.544e-1830.77Peptidyl-tRNA hydrolase OS=Lactobacillus casei (st... [more]
PTH_AGRT57.544e-1834.16Peptidyl-tRNA hydrolase OS=Agrobacterium tumefacie... [more]
PTH_RHOPT9.853e-1837.04Peptidyl-tRNA hydrolase OS=Rhodopseudomonas palust... [more]
PTH_RHOPA9.853e-1837.04Peptidyl-tRNA hydrolase OS=Rhodopseudomonas palust... [more]
PTH_RALEH9.853e-1832.28Peptidyl-tRNA hydrolase OS=Ralstonia eutropha (str... [more]
PTH_PSE149.853e-1832.57Peptidyl-tRNA hydrolase OS=Pseudomonas syringae pv... [more]
PTH_MYCAP9.853e-1831.77Peptidyl-tRNA hydrolase OS=Mycoplasma agalactiae (... [more]
PTH_LACDB9.853e-1830.36Peptidyl-tRNA hydrolase OS=Lactobacillus delbrueck... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10DD09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263115 ID=DY263115; Name=DY263115; organism=Citrus clementina; type=EST; length=1228bp
ACACATTCACTCACACACGTCCTCTCTGCAGCCACAGCCGCCGCTTACAA
ACGCCCCTCTAACCCTAAGCTGACAAACGCCCACGCCCACGCCCACGCTG
CCGGCGCTGTCACTTTGGTTCAAGTGTGCCGACGCTGCAGCTTCTAGCCG
TTCTCGATTTGCTTCCTCGTTCCAGCTGCTGCGCTGCCTCCGGCTTCGTT
CGCCGTCGTCAGCCGTCGTCAGCCGCACAAGTGAAGTGGAAGGAAACTGA
GAACATTTGAGGAGATGCTTATTAACAGGTTTCTGAGGCGTGGTTTCTGC
ACTGCTGTTGCTCGGCCATGGCTTTTTGTGGGGTTGGGTAACCCGGGAGA
TAAATACAAAGGAACTAGACACAATGTGGGGTTTGAGATGATCGACGCAT
TTGCTGAATCACAAGGGATTTCTATGAACACGGTTCATTGCAAAGCTACT
TTCGGACAAGGTTTTGTTGGTGATGCCCCTGTACTCCTTGCAAAGCCACA
GACTTACATGAATCTGAGCGGTGAATCTACTGGACCACTTGCAGCTTATT
ATAAGTTACCTCTTAATCGTGTTCTTGTGTTTCATGATGACATGGGCTTA
CCTTGTGGAGTGCTTCGTCTGCGCCACAATGGAGGTCATGGAGGCCACAA
TGGGCTGAAGAGTGTGATGAACAACTTTCGAGGTAACCGAGAATTTGCTC
GGCTAAGAATTGGTATTGGGAGGCCTCCTGGTCAAATGGATCCTAAAGCT
TTCTTGCTGCAGAAGTTTAATGCAATAGCTCGAGAGCGAATTGATACTGC
TTTGCAAGAAGGGGTTGAGGTTCTGAAGCTGCTTTTATCTAAAGGCTTGA
CAGAGAGTGCTAGACATTTCAACACCATACAAAAATACAAGCACATAAGA
TTGCAAAACATGCCAGCATGAGCTATTGGTACCTTCGATGACAACCACAA
AAGCACCGAATGGTTCTTCTGGCCGCATTTGTATAAAACTTACAATATTT
AAAATCCCCGAGGAGAGAGGAAGCGAAACCACCCATCCCCATGGAAAGAA
AACTTCAACCAACTTAAGTGAAGGGCTTAACCCAATACCAAACTGAATTG
GTTTGGCTGTTTTTTTTGCAGCAAATCAACCTTCCCAAAATTGGGAAAAT
TTTCCCCATGGCTAGGGCCCGAACCCAAAGGAAAGGGGCTGAACCATATT
AAAAAACAAAAAAACACCACCCCCCTTA
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