DY263115

Overview
NameDY263115
Unique NameDY263115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1228
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_AZOVD (Peptidyl-tRNA hydrolase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=pth PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.287e-17
Identity = 56/190 (29.47%), Postives = 93/190 (48.95%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGD-----APVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 876
            L VGLGNPG +Y+ TRHN G   ++  A ++G+ ++    K  FG   VG        V L  P TYMN SG+S   LA ++++P   +LV HD++ +P G                + ++  F     F RLR+GIG P  +     F+L +     +E+++  +   ++VL  +L    T + +  ++
Sbjct:    6 LIVGLGNPGPEYEQTRHNAGALFVERVASAKGVRLSAD--KKYFG--LVGKFSHQGRDVRLLIPTTYMNRSGQSVAALANFFRIPPAAILVAHDELDMPPGTARLKQGGGHGGHNGLRDIIAQFGNQNSFYRLRLGIGHPGDKNLVSGFVLGRAPRSEQEKLEACIDFALDVLPDMLDGNWTRAMQQLHS 191          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_ACHLI (Peptidyl-tRNA hydrolase OS=Acholeplasma laidlawii (strain PG-8A) GN=pth PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.287e-17
Identity = 55/151 (36.42%), Postives = 77/151 (50.99%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFN 771
            L VGLGNPG +Y  TRHN+GF  ID         +      +A + +  +    V++AKP TYMNLSG++   L  +YK+ +  +LV  DD  LP G                K ++N   G ++F RLRIGIG     MD   ++L KF+
Sbjct:    3 LIVGLGNPGKQYVQTRHNIGFIAIDKLLSYLNTELKVDSKLQAAYTKTKIEGEDVIIAKPLTYMNLSGDAVTKLMNFYKIDVEDILVILDDTALPLGKIRIRQTGSHGGQNGLKDIINKL-GTKDFKRLRIGIGE-HAHMDKVDYVLGKFS 151          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_XANP2 (Peptidyl-tRNA hydrolase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=pth PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.681e-17
Identity = 50/175 (28.57%), Postives = 81/175 (46.29%), Query Frame = 1
Query:  319 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSK 843
            +LF GLGNPG KY G RHN+GF  ++A      +       ++   +G +    V+   P+TYMN SG +      +YK+PL+ + VFHD++ LP                  +S+    +   ++ R+R+GIG P  +    A++L  F    +  +D       +   LL  K
Sbjct:    2 FLFAGLGNPGPKYAGNRHNIGFMALEAICRRHRLGPLRRRFQSLAAEGEIAGEKVIALFPETYMNESGRAVSEAQRFYKIPLDHIFVFHDELDLPPAKLRIKKGGGNAGHNGLRSI--TAQCGNDYFRVRLGIGHPGDKALVHAYVLNDFAKSEKPWLDAVCDACADFADLLAQK 174          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_VARPS (Peptidyl-tRNA hydrolase OS=Variovorax paradoxus (strain S110) GN=pth PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.681e-17
Identity = 58/164 (35.37%), Postives = 86/164 (52.44%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGF---VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 804
            LFVGLGNPG +Y+ TRHN GF  IDA A      +N V  ++  G      +G   V L +PQT+MNLSG+S G LA ++K+    +LV HD++ +  G                + +     G  ++ RLR+GIG P  + +   ++L+K     RE I+ A+
Sbjct:    4 LFVGLGNPGPEYEATRHNAGFWWIDALARDW--KLNLVPERSYHGLAARTNIGGQSVWLLEPQTFMNLSGKSVGALARFFKIAPEEILVVHDELDVVPGQAKLKFGGSHAGHNGLRDIHAQL-GTGDYWRLRLGIGHPGVKSEVINWVLKKPLKEQREAIEDAI 164          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_SODGM (Peptidyl-tRNA hydrolase OS=Sodalis glossinidius (strain morsitans) GN=pth PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.681e-17
Identity = 58/194 (29.90%), Postives = 95/194 (48.97%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYK 891
            L VGL NPG +Y  TRHN G   ++  AE       T+  ++ F    G+  +G   V L  P T+MNLSG++   +A +Y++    +LV HD++ L  G                K +++    N +F RLRIGI  P  +     F+L K     R+ ID+A+ E V   ++L+++   ++ +  N +  Y+
Sbjct:    5 LIVGLANPGAEYAATRHNAGAWYVELLAERY---RQTLKEESKFYGYTGRLTLGGQDVRLLVPTTFMNLSGKAVAAMATFYRIAPEDILVAHDELDLLPGSARLKLGGGHGGHNGLKDIISRLGNNPQFHRLRIGISHPGDKNQVVGFVLGKPPTAERQLIDSAIDEAVRCTEILVTQ---DAVKAMNRLHAYR 192          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_RHOP5 (Peptidyl-tRNA hydrolase OS=Rhodopseudomonas palustris (strain BisA53) GN=pth PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.681e-17
Identity = 56/172 (32.56%), Postives = 83/172 (48.26%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLL 837
            L VGLGNPG KY+G RHN+GF  +D  A   G S      +     G +G   V L KP T+MN SG +    A+++KL L  ++V HD++ LP                  +S+  +  GN E+ R+RIG+G P  +      +L  F    R  ++  L+   +   LL+
Sbjct:    3 LLVGLGNPGAKYQGNRHNIGFMALDEIARRHGFSPWRRRFQGETADGSIGGERVTLLKPLTFMNDSGRAVQDAASFFKLGLPEIIVLHDEIELPAAKLRVKVGGGIAGHNGLRSISAHI-GN-EYRRVRIGVGHPGVKELVHGHVLNDFAKAERPWVEAMLEAITDNADLLV 172          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_RALPJ (Peptidyl-tRNA hydrolase OS=Ralstonia pickettii (strain 12J) GN=pth PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.681e-17
Identity = 59/196 (30.10%), Postives = 94/196 (47.96%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRP----------PGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 876
            L VGLGNPG +Y  TRHN GF ++D  A    +++ N         +  +    V L +PQT+MN SG +T  LA +YK+  + +LV HD++ LP G                K +  +    ++F RLR+GIG P           GQ D   F+L+      ++ ID A+ + ++ L  L++    ++    +T
Sbjct:    4 LIVGLGNPGAEYAATRHNAGFWLVDQLARMGNVTLRNETRFHGYAARANLWGNEVWLLQPQTFMNRSGLATVALARFYKVMPDEILVVHDELDLPPGTVKLKLGGGSGGHNGLKDIAAHLT-TQQFWRLRLGIGHPRNLLPPGTAASGQHDVANFVLKAPRKEEQDLIDRAIDQSLDALPELIAGNAEKAMMRLHT 198          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_PSEAE (Peptidyl-tRNA hydrolase OS=Pseudomonas aeruginosa GN=pth PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.681e-17
Identity = 58/190 (30.53%), Postives = 93/190 (48.95%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGD-----APVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 876
            L VGLGNPG +Y  TRHN G   ++  A +QG+S+  V  +  FG   VG        V L  P TYMN SG+S   LA ++++  + +LV HD++ +P GV               + ++        F RLR+GIG P        ++L +     +E +DT++   + VL  +L+   T + +  ++
Sbjct:    6 LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSL--VADRKYFG--LVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAMQKLHS 191          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_PSEAB (Peptidyl-tRNA hydrolase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=pth PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.681e-17
Identity = 58/190 (30.53%), Postives = 93/190 (48.95%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGD-----APVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 876
            L VGLGNPG +Y  TRHN G   ++  A +QG+S+  V  +  FG   VG        V L  P TYMN SG+S   LA ++++  + +LV HD++ +P GV               + ++        F RLR+GIG P        ++L +     +E +DT++   + VL  +L+   T + +  ++
Sbjct:    6 LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSL--VADRKYFG--LVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAMQKLHS 191          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_PSEA8 (Peptidyl-tRNA hydrolase OS=Pseudomonas aeruginosa (strain LESB58) GN=pth PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.681e-17
Identity = 58/190 (30.53%), Postives = 93/190 (48.95%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGD-----APVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 876
            L VGLGNPG +Y  TRHN G   ++  A +QG+S+  V  +  FG   VG        V L  P TYMN SG+S   LA ++++  + +LV HD++ +P GV               + ++        F RLR+GIG P        ++L +     +E +DT++   + VL  +L+   T + +  ++
Sbjct:    6 LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSL--VADRKYFG--LVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAMQKLHS 191          
The following BLAST results are available for this feature:
BLAST of DY263115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_AZOVD1.287e-1729.47Peptidyl-tRNA hydrolase OS=Azotobacter vinelandii ... [more]
PTH_ACHLI1.287e-1736.42Peptidyl-tRNA hydrolase OS=Acholeplasma laidlawii ... [more]
PTH_XANP21.681e-1728.57Peptidyl-tRNA hydrolase OS=Xanthobacter autotrophi... [more]
PTH_VARPS1.681e-1735.37Peptidyl-tRNA hydrolase OS=Variovorax paradoxus (s... [more]
PTH_SODGM1.681e-1729.90Peptidyl-tRNA hydrolase OS=Sodalis glossinidius (s... [more]
PTH_RHOP51.681e-1732.56Peptidyl-tRNA hydrolase OS=Rhodopseudomonas palust... [more]
PTH_RALPJ1.681e-1730.10Peptidyl-tRNA hydrolase OS=Ralstonia pickettii (st... [more]
PTH_PSEAE1.681e-1730.53Peptidyl-tRNA hydrolase OS=Pseudomonas aeruginosa ... [more]
PTH_PSEAB1.681e-1730.53Peptidyl-tRNA hydrolase OS=Pseudomonas aeruginosa ... [more]
PTH_PSEA81.681e-1730.53Peptidyl-tRNA hydrolase OS=Pseudomonas aeruginosa ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10DD09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263115 ID=DY263115; Name=DY263115; organism=Citrus clementina; type=EST; length=1228bp
ACACATTCACTCACACACGTCCTCTCTGCAGCCACAGCCGCCGCTTACAA
ACGCCCCTCTAACCCTAAGCTGACAAACGCCCACGCCCACGCCCACGCTG
CCGGCGCTGTCACTTTGGTTCAAGTGTGCCGACGCTGCAGCTTCTAGCCG
TTCTCGATTTGCTTCCTCGTTCCAGCTGCTGCGCTGCCTCCGGCTTCGTT
CGCCGTCGTCAGCCGTCGTCAGCCGCACAAGTGAAGTGGAAGGAAACTGA
GAACATTTGAGGAGATGCTTATTAACAGGTTTCTGAGGCGTGGTTTCTGC
ACTGCTGTTGCTCGGCCATGGCTTTTTGTGGGGTTGGGTAACCCGGGAGA
TAAATACAAAGGAACTAGACACAATGTGGGGTTTGAGATGATCGACGCAT
TTGCTGAATCACAAGGGATTTCTATGAACACGGTTCATTGCAAAGCTACT
TTCGGACAAGGTTTTGTTGGTGATGCCCCTGTACTCCTTGCAAAGCCACA
GACTTACATGAATCTGAGCGGTGAATCTACTGGACCACTTGCAGCTTATT
ATAAGTTACCTCTTAATCGTGTTCTTGTGTTTCATGATGACATGGGCTTA
CCTTGTGGAGTGCTTCGTCTGCGCCACAATGGAGGTCATGGAGGCCACAA
TGGGCTGAAGAGTGTGATGAACAACTTTCGAGGTAACCGAGAATTTGCTC
GGCTAAGAATTGGTATTGGGAGGCCTCCTGGTCAAATGGATCCTAAAGCT
TTCTTGCTGCAGAAGTTTAATGCAATAGCTCGAGAGCGAATTGATACTGC
TTTGCAAGAAGGGGTTGAGGTTCTGAAGCTGCTTTTATCTAAAGGCTTGA
CAGAGAGTGCTAGACATTTCAACACCATACAAAAATACAAGCACATAAGA
TTGCAAAACATGCCAGCATGAGCTATTGGTACCTTCGATGACAACCACAA
AAGCACCGAATGGTTCTTCTGGCCGCATTTGTATAAAACTTACAATATTT
AAAATCCCCGAGGAGAGAGGAAGCGAAACCACCCATCCCCATGGAAAGAA
AACTTCAACCAACTTAAGTGAAGGGCTTAACCCAATACCAAACTGAATTG
GTTTGGCTGTTTTTTTTGCAGCAAATCAACCTTCCCAAAATTGGGAAAAT
TTTCCCCATGGCTAGGGCCCGAACCCAAAGGAAAGGGGCTGAACCATATT
AAAAAACAAAAAAACACCACCCCCCTTA
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