DY263115

Overview
NameDY263115
Unique NameDY263115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1228
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_GRABC (Peptidyl-tRNA hydrolase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=pth PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.867e-17
Identity = 59/178 (33.15%), Postives = 83/178 (46.63%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 855
            L+ GLGNP       RHN+GF  +DA A+  G +      K    +G +    ++L KP TYMN SGES  P  A++KLP   V  FHD++ L  G                +S M+   G  E+ R+R+GIG P  +      +L  F    +E +   L E V     LL++G  E
Sbjct:    6 LWTGLGNPEPGMALQRHNIGFMAVDAIAQRHGFTPWRNRFKGLTAEGTLAGRKIILLKPMTYMNASGESVQPATAFFKLPPEAVSAFHDELDLAPGKVRVKRGGGAAGHNGLRS-MDRMLGTPEYWRVRLGIGHPGSKERVHGHVLGNFAKSDQEWLGPLL-EAVADAAPLLAEGRAE 181          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_STRMU (Peptidyl-tRNA hydrolase OS=Streptococcus mutans GN=pth PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.744e-17
Identity = 57/186 (30.65%), Postives = 87/186 (46.77%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLL-SKGLTESARHFN 873
            L VGLGNPG KY  T+HNVGF  +D   +   +        KA     F+    +   KP T+MN SG +     AYY L +  ++V +DD+ +  G                KS++    G +EF R++IGIGRP  +M    ++L KF+      I   L +  + +   L +K   ++ + FN
Sbjct:    4 LIVGLGNPGSKYHETKHNVGFMALDRIVKPLNVQFTENKTFKAETVATFINGEKIYFIKPTTFMNASGLAVRAFLAYYNLTVEDLIVIYDDLDMEVGKIRFRQKGSAGGHNGIKSIIKEI-GTQEFDRIKIGIGRPKDKMTVVNYVLGKFDKKDEITIFNTLDKVDKAVNYYLQTKNFEQTMQKFN 188          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_SHEFN (Peptidyl-tRNA hydrolase OS=Shewanella frigidimarina (strain NCIMB 400) GN=pth PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.744e-17
Identity = 55/190 (28.95%), Postives = 93/190 (48.95%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFG---QGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQ 882
            L VGL NPG +Y  TRHN G   +   A    + +  V     FG   +  +    V L  P TYMNLSG+S   LA ++++    +LV HD++ +  GV               K ++ +   ++ F RLRIGIG P  +     ++L +  A+ +ERI+ A+ E V   ++L ++ + ++    ++ +
Sbjct:    6 LIVGLANPGAEYAQTRHNAGAWYVQELARICNVPL--VAESKYFGVTARATLHGRDVRLLIPTTYMNLSGKSVAALANFFRILPEEILVAHDELDMDPGVAKFKLGGGHGGHNGLKDIIASLGNDKNFHRLRIGIGHPGDKNKVSGYVLGRAPAVEQERINAAIDEAVRSTEILFNQDMAKAMHRLHSFK 193          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_RICCK (Peptidyl-tRNA hydrolase OS=Rickettsia canadensis (strain McKiel) GN=pth PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.744e-17
Identity = 56/179 (31.28%), Postives = 87/179 (48.60%), Query Frame = 1
Query:  328 VGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNT---VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 855
            +GLGNPG +Y+ TRHN+GF +I+  A    +S +T    +C+    +  V    ++  KP TYMNLSG+S   +  YY +   ++ V HDD+ L  G                KS+ +   GN  + R+RIG+GRP    D   ++L  F     E +  ++ +      L+L   L E
Sbjct:    5 IGLGNPGKEYQYTRHNIGFIVIEKIANQYNLSFSTKKKFNCEIV--ESSVEKQKLIFIKPTTYMNLSGKSVISVKTYYNICSEKIFVIHDDIDLETGRIKFKTGGGNGGHNGLKSI-DRVIGN-NYNRIRIGVGRPQNNQDVADYVLNNFPRSEYEIVIQSIDKITNNFDLILENKLEE 179          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_MYCS5 (Peptidyl-tRNA hydrolase OS=Mycoplasma synoviae (strain 53) GN=pth PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.744e-17
Identity = 58/167 (34.73%), Postives = 86/167 (51.50%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEV 822
            L VGLGNPGDKYK TRHNVGF +ID   +   I+++    + T G  +      ++AKP TYMNLSG     LA ++K+  + +LV HD+     G                  V+N     + F RL+IGIG+   +M  K ++LQ+F+      ++  L +  +V
Sbjct:    3 LIVGLGNPGDKYKFTRHNVGFLVIDLICQKLKITLDK---EKTHG-SYAKFEDFIIAKPNTYMNLSGNFVLELANFFKIAPDDILVIHDEKDFELGKSAIKIGGSGGSHNGVLDVINKL-NTQNFKRLKIGIGQNQ-EMALKDYVLQRFSLEEFSVLEPVLNQAADV 163          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_BRUSU (Peptidyl-tRNA hydrolase OS=Brucella suis GN=pth PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.744e-17
Identity = 54/164 (32.93%), Postives = 77/164 (46.95%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSV---MNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 804
            L  GLGNPG +Y   RHN+GF   D        S      +A    G +    VLL KPQT+MNLSG+S G    +YKL    ++V +D++ L  G                KS+   M +F G + + R+R+GIG P  +     ++L  F     E +DT +
Sbjct:    3 LIAGLGNPGPQYAHNRHNIGFMAADEIFRRHRFSNWQKKFQAEIADGVIDGEKVLLVKPQTFMNLSGQSIGEAMRFYKLTPADLVVIYDELDLVPGKLRIKTGGGSGGHNGIKSIDAHMQSFPGGQNYRRMRLGIGHPGAKELVHNYVLGDFAKADNEWLDTLM 166          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_BRUSI (Peptidyl-tRNA hydrolase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=pth PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.744e-17
Identity = 54/164 (32.93%), Postives = 77/164 (46.95%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSV---MNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 804
            L  GLGNPG +Y   RHN+GF   D        S      +A    G +    VLL KPQT+MNLSG+S G    +YKL    ++V +D++ L  G                KS+   M +F G + + R+R+GIG P  +     ++L  F     E +DT +
Sbjct:    3 LIAGLGNPGPQYAHNRHNIGFMAADEIFRRHRFSNWQKKFQAEIADGVIDGEKVLLVKPQTFMNLSGQSIGEAMRFYKLTPADLVVIYDELDLVPGKLRIKTGGGPGGHNGIKSIDAHMQSFPGGQNYRRMRLGIGHPGAKELVHNYVLGDFAKADNEWLDTLM 166          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_BRUO2 (Peptidyl-tRNA hydrolase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=pth PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.744e-17
Identity = 54/164 (32.93%), Postives = 77/164 (46.95%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSV---MNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 804
            L  GLGNPG +Y   RHN+GF   D        S      +A    G +    VLL KPQT+MNLSG+S G    +YKL    ++V +D++ L  G                KS+   M +F G + + R+R+GIG P  +     ++L  F     E +DT +
Sbjct:    3 LIAGLGNPGPQYAHNRHNIGFMAADEIFRRHRFSNWQKKFQAEIADGVIDGEKVLLVKPQTFMNLSGQSIGEAMRFYKLTPADLVVIYDELDLVPGKLRIKTGGGSGGHNGIKSIDAHMQSFPGGQNYRRMRLGIGHPGAKELVHNYVLGDFAKADNEWLDTLM 166          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_BRUME (Peptidyl-tRNA hydrolase OS=Brucella melitensis GN=pth PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.744e-17
Identity = 54/164 (32.93%), Postives = 77/164 (46.95%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSV---MNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 804
            L  GLGNPG +Y   RHN+GF   D        S      +A    G +    VLL KPQT+MNLSG+S G    +YKL    ++V +D++ L  G                KS+   M +F G + + R+R+GIG P  +     ++L  F     E +DT +
Sbjct:    3 LIAGLGNPGPQYAHNRHNIGFMAADEIFRRHRFSNWQKKFQAEIADGVIDGEKVLLVKPQTFMNLSGQSIGEAMRFYKLTPADLVVIYDELDLVPGKLRIKTGGGSGGHNGIKSIDAHMQSFPGGQNYRRMRLGIGHPGAKELVHNYVLGDFAKADNEWLDTLM 166          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_BRUMB (Peptidyl-tRNA hydrolase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=pth PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.744e-17
Identity = 54/164 (32.93%), Postives = 77/164 (46.95%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSV---MNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTAL 804
            L  GLGNPG +Y   RHN+GF   D        S      +A    G +    VLL KPQT+MNLSG+S G    +YKL    ++V +D++ L  G                KS+   M +F G + + R+R+GIG P  +     ++L  F     E +DT +
Sbjct:    3 LIAGLGNPGPQYAHNRHNIGFMAADEIFRRHRFSNWQKKFQAEIADGVIDGEKVLLVKPQTFMNLSGQSIGEAMRFYKLTPADLVVIYDELDLVPGKLRIKTGGGSGGHNGIKSIDAHMQSFPGGQNYRRMRLGIGHPGAKELVHNYVLGDFAKADNEWLDTLM 166          
The following BLAST results are available for this feature:
BLAST of DY263115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_GRABC2.867e-1733.15Peptidyl-tRNA hydrolase OS=Granulibacter bethesden... [more]
PTH_STRMU3.744e-1730.65Peptidyl-tRNA hydrolase OS=Streptococcus mutans GN... [more]
PTH_SHEFN3.744e-1728.95Peptidyl-tRNA hydrolase OS=Shewanella frigidimarin... [more]
PTH_RICCK3.744e-1731.28Peptidyl-tRNA hydrolase OS=Rickettsia canadensis (... [more]
PTH_MYCS53.744e-1734.73Peptidyl-tRNA hydrolase OS=Mycoplasma synoviae (st... [more]
PTH_BRUSU3.744e-1732.93Peptidyl-tRNA hydrolase OS=Brucella suis GN=pth PE... [more]
PTH_BRUSI3.744e-1732.93Peptidyl-tRNA hydrolase OS=Brucella suis (strain A... [more]
PTH_BRUO23.744e-1732.93Peptidyl-tRNA hydrolase OS=Brucella ovis (strain A... [more]
PTH_BRUME3.744e-1732.93Peptidyl-tRNA hydrolase OS=Brucella melitensis GN=... [more]
PTH_BRUMB3.744e-1732.93Peptidyl-tRNA hydrolase OS=Brucella melitensis bio... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10DD09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263115 ID=DY263115; Name=DY263115; organism=Citrus clementina; type=EST; length=1228bp
ACACATTCACTCACACACGTCCTCTCTGCAGCCACAGCCGCCGCTTACAA
ACGCCCCTCTAACCCTAAGCTGACAAACGCCCACGCCCACGCCCACGCTG
CCGGCGCTGTCACTTTGGTTCAAGTGTGCCGACGCTGCAGCTTCTAGCCG
TTCTCGATTTGCTTCCTCGTTCCAGCTGCTGCGCTGCCTCCGGCTTCGTT
CGCCGTCGTCAGCCGTCGTCAGCCGCACAAGTGAAGTGGAAGGAAACTGA
GAACATTTGAGGAGATGCTTATTAACAGGTTTCTGAGGCGTGGTTTCTGC
ACTGCTGTTGCTCGGCCATGGCTTTTTGTGGGGTTGGGTAACCCGGGAGA
TAAATACAAAGGAACTAGACACAATGTGGGGTTTGAGATGATCGACGCAT
TTGCTGAATCACAAGGGATTTCTATGAACACGGTTCATTGCAAAGCTACT
TTCGGACAAGGTTTTGTTGGTGATGCCCCTGTACTCCTTGCAAAGCCACA
GACTTACATGAATCTGAGCGGTGAATCTACTGGACCACTTGCAGCTTATT
ATAAGTTACCTCTTAATCGTGTTCTTGTGTTTCATGATGACATGGGCTTA
CCTTGTGGAGTGCTTCGTCTGCGCCACAATGGAGGTCATGGAGGCCACAA
TGGGCTGAAGAGTGTGATGAACAACTTTCGAGGTAACCGAGAATTTGCTC
GGCTAAGAATTGGTATTGGGAGGCCTCCTGGTCAAATGGATCCTAAAGCT
TTCTTGCTGCAGAAGTTTAATGCAATAGCTCGAGAGCGAATTGATACTGC
TTTGCAAGAAGGGGTTGAGGTTCTGAAGCTGCTTTTATCTAAAGGCTTGA
CAGAGAGTGCTAGACATTTCAACACCATACAAAAATACAAGCACATAAGA
TTGCAAAACATGCCAGCATGAGCTATTGGTACCTTCGATGACAACCACAA
AAGCACCGAATGGTTCTTCTGGCCGCATTTGTATAAAACTTACAATATTT
AAAATCCCCGAGGAGAGAGGAAGCGAAACCACCCATCCCCATGGAAAGAA
AACTTCAACCAACTTAAGTGAAGGGCTTAACCCAATACCAAACTGAATTG
GTTTGGCTGTTTTTTTTGCAGCAAATCAACCTTCCCAAAATTGGGAAAAT
TTTCCCCATGGCTAGGGCCCGAACCCAAAGGAAAGGGGCTGAACCATATT
AAAAAACAAAAAAACACCACCCCCCTTA
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