DY263115

Overview
NameDY263115
Unique NameDY263115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1228
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_PSEF5 (Peptidyl-tRNA hydrolase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=pth PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 4.890e-17
Identity = 57/175 (32.57%), Postives = 84/175 (48.00%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFG-------QGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVL 825
            L VGLGNPG +Y+ TRHN G   ++  AE QGI  N V  +  FG       QG      + L  P TYMN SG++   LA ++++    +LV HD++ LP GV               + ++        F RLR+GIG P        F+L +     +E++D ++   + VL
Sbjct:    6 LIVGLGNPGTEYEQTRHNAGALFVERIAEKQGI--NLVADRKYFGLTGRFSHQG----QDIRLLIPTTYMNRSGQAVAALAGFFRIKPEEILVAHDELDLPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNTFHRLRLGIGHPGVASMVSNFVLGRAPRAEQEKLDASIDFALGVL 174          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_METS4 (Peptidyl-tRNA hydrolase OS=Methylobacterium sp. (strain 4-46) GN=pth PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.890e-17
Identity = 52/158 (32.91%), Postives = 77/158 (48.73%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERID 795
            LFVGLGNPG +Y   RHN+GF  +DA A     +      +    +  +G   VLL KP+TYMN SG +      +YK+ L+ V+VFHD++ L                   +S+    +   E+ R+R+GIG P  +    A++L  F    R  +D
Sbjct:    3 LFVGLGNPGARYAANRHNIGFMALDAVARRHRAAPWRRKFQGEASEAVIGTERVLLLKPETYMNESGRAVAEAQRFYKIALDDVVVFHDELDLAPAKVRVKKGGGNAGHNGLRSI--TAQCGNEYWRVRLGIGHPGDKALVHAYVLNDFAKAERPWVD 158          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_EHRCR (Peptidyl-tRNA hydrolase OS=Ehrlichia chaffeensis (strain Arkansas) GN=pth PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.890e-17
Identity = 59/197 (29.95%), Postives = 96/197 (48.73%), Query Frame = 1
Query:  319 WLFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPG----QMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHI 897
            +L  GLGNPG KY+ +RHN GF ++DA A             A    G +    V+L KP T+MN SG     +A+ YK+PL+ +++FHD++ +                   KS+ N     +++ R+R GIGRP      ++D   ++L +F+ I  + ++  +   VE + LLL K  +        + KY+ I
Sbjct:    3 YLLAGLGNPGKKYELSRHNAGFMIVDAIASEFYFPSFRERHNALISIGNIKSHRVILVKPWTFMNNSGAPIMSIASLYKIPLDNIIIFHDEVEINFCTIRVKKSGGNAGHNGLKSIDNLL--GKDYWRVRFGIGRPINKTNLKIDLSYYVLSQFHNI--KAVNNTILNIVEHITLLLEKKPSMFMEKVKNLIKYEDI 195          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_CHRVO (Peptidyl-tRNA hydrolase OS=Chromobacterium violaceum GN=pth PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.890e-17
Identity = 59/189 (31.22%), Postives = 93/189 (49.21%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFA-ESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQK 885
            L VGLGNPG +Y+ TRHN GF ++D    + +G   +         +  +    V L KP TYMNLSG++   LA +YK+  + +LV HD++ L  GV               K +      +  F RLR+GIG P  + +   F+L+K  A  ++ +D A+   +  L   +S  + E+ +  +T  K
Sbjct:    6 LIVGLGNPGPEYEKTRHNAGFWLVDELCWQFKGNWRSEGKFHGDVARIQIEGQDVWLLKPMTYMNLSGQAVLALAHFYKILPDEILVVHDELDLAPGVARFKQGGGHGGHNGLKDIAARL-SSPAFWRLRLGIGHPGDKKEVANFVLKKPRAEEQQALDEAVLASLRELPRAVSGKMAEAMKALHTEAK 193          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_THICR (Peptidyl-tRNA hydrolase OS=Thiomicrospira crunogena (strain XCL-2) GN=pth PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.387e-17
Identity = 58/193 (30.05%), Postives = 89/193 (46.11%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAP--------VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 876
            L VGLGNPG +Y+ TRHN GF  ++  A    +              F+G+A         V L KP T+MN SG+S   +A +YK+    +LV HD++ L  GV               +  +    G ++F RLR+GIG P  +     ++L+  +   R  ID A+ +   VL  LL+  +  +    +T
Sbjct:    6 LIVGLGNPGGQYEQTRHNAGFWFVEDVARQYNVQFRPE-------TKFLGEAARIQSNGLDVWLLKPMTFMNRSGQSIQAIAKFYKIAPEEILVVHDELDLDPGVARLKTSGGHGGHNGLRDTIAAL-GTKDFKRLRLGIGHPGDRNQVVDYVLKAPSKTDRALIDDAIYDATRVLPDLLNDDMARAMNELHT 190          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_RHOPS (Peptidyl-tRNA hydrolase OS=Rhodopseudomonas palustris (strain BisB5) GN=pth PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.387e-17
Identity = 68/212 (32.08%), Postives = 98/212 (46.23%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA*AIGTFDDNHKST 957
            LFVGLGNPG KY+  RHN+GF +ID  A   G S      +     G +    + L KP TYMN SG +     ++YK+    V VFHD++ LP                  +S+  +  GN ++ R+R+G+G P  +      +L  F    R  +  AL E V     L++KG    A   N +    H+ LQ     A G  DD++K +
Sbjct:    3 LFVGLGNPGSKYQDNRHNIGFMVIDEIARRHGFSPWRRRFQGETADGSLDGERITLLKPLTYMNESGRAVQEAVSFYKIGHGEVAVFHDEIELPPAKLRVKVGGGIAGHNGLRSISAHI-GN-DYLRVRLGVGHPGVKELVHGHVLGDFAKSERPWV-AALAEAVADNAGLIAKG--REATFANKV----HLALQ-----ARGFLDDDNKKS 200          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_RALME (Peptidyl-tRNA hydrolase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=pth PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.387e-17
Identity = 63/192 (32.81%), Postives = 95/192 (49.48%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRP--------PGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA 861
            L VGLGNPG +Y+ TRHN GF ++D  A   G    T+  ++ F    G+  + D  V L KP T+MN SG S   LA +YK+  + ++V HD+M LP G                K +  +    +++ RLRIG+G P         G+ D   F+L+      ++ ID A+   +  L   L++G +E A
Sbjct:    4 LIVGLGNPGAEYEATRHNAGFWLVDQLARMGG---TTLRVESRFHGLAGRARLWDQDVWLLKPSTFMNRSGLSVVSLARFYKILPDEIVVAHDEMDLPAGSAKLKRGGGSGGHNGLKDISAHLT-TQDYWRLRIGVGHPRNAPGGAAGGREDVVNFVLKPPRKEEQQAIDEAIDRCIGPLG-TLARGESERA 190          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_LACGA (Peptidyl-tRNA hydrolase OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=pth PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.387e-17
Identity = 52/168 (30.95%), Postives = 83/168 (49.40%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVL 825
            L  GLGNPG KY  T+HN GF  +D +     + ++    +  + +  V    V+  +PQT+MN SG+S   +A ++K+    +LV HDDM +P G                KS+M    G   F RL+IGI R P +    +++L  FN   ++ +D A +    ++
Sbjct:    3 LIAGLGNPGKKYDQTKHNTGFMALDHYLSKNNLDLDKDKFEGLWTKQKVNGEDVIFLEPQTFMNDSGKSIAQVANFFKIAPEDILVIHDDMDMPIGKIRIRANGKSGGHNGIKSIMACL-GTNNFNRLKIGI-RHPQKESVVSWVLSPFNDEQQKLMDAAFEVSENII 168          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_EHRRW (Peptidyl-tRNA hydrolase OS=Ehrlichia ruminantium (strain Welgevonden) GN=pth PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.387e-17
Identity = 58/192 (30.21%), Postives = 85/192 (44.27%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHI 897
            L VGLGNPG +Y+ TRHNVGF +IDA               A    G +    V+LAKP T+MN SG     +   YK+PL+ ++VFHD+  +                   KS+       R++ R+R GIG P    D    +L +FN +    ++  +   +E + LL     +        + KY  I
Sbjct:    4 LLVGLGNPGKEYELTRHNVGFMIIDAIMHHFLFPDFKKKHNALISSGSIRSHKVILAKPYTFMNNSGTPISSIVKLYKIPLDNIIVFHDETDIDFCTIRIKKGGGNAGHNGLKSIDTLL--GRDYWRIRFGIGHPSNGYDLSYHVLSQFNNL--NAVNNTISNIIEHISLLFENDKSIFKNKVKDLIKYTDI 191          
BLAST of DY263115 vs. ExPASy Swiss-Prot
Match: PTH_EHRRG (Peptidyl-tRNA hydrolase OS=Ehrlichia ruminantium (strain Gardel) GN=pth PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 6.387e-17
Identity = 58/192 (30.21%), Postives = 85/192 (44.27%), Query Frame = 1
Query:  322 LFVGLGNPGDKYKGTRHNVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHI 897
            L VGLGNPG +Y+ TRHNVGF +IDA               A    G +    V+LAKP T+MN SG     +   YK+PL+ ++VFHD+  +                   KS+       R++ R+R GIG P    D    +L +FN +    ++  +   +E + LL     +        + KY  I
Sbjct:    4 LLVGLGNPGKEYELTRHNVGFMIIDAIMHHFLFPDFKKKHNALISSGSIQSYKVILAKPYTFMNNSGAPISSIVKLYKIPLDNIIVFHDETDIDFCTIRIKKGGGNAGHNGLKSIDTLL--GRDYWRIRFGIGHPSNGYDLSYHVLSQFNNL--NAVNNTISNIIEHISLLFENDKSIFKNKVKDLIKYTDI 191          
The following BLAST results are available for this feature:
BLAST of DY263115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTH_PSEF54.890e-1732.57Peptidyl-tRNA hydrolase OS=Pseudomonas fluorescens... [more]
PTH_METS44.890e-1732.91Peptidyl-tRNA hydrolase OS=Methylobacterium sp. (s... [more]
PTH_EHRCR4.890e-1729.95Peptidyl-tRNA hydrolase OS=Ehrlichia chaffeensis (... [more]
PTH_CHRVO4.890e-1731.22Peptidyl-tRNA hydrolase OS=Chromobacterium violace... [more]
PTH_THICR6.387e-1730.05Peptidyl-tRNA hydrolase OS=Thiomicrospira crunogen... [more]
PTH_RHOPS6.387e-1732.08Peptidyl-tRNA hydrolase OS=Rhodopseudomonas palust... [more]
PTH_RALME6.387e-1732.81Peptidyl-tRNA hydrolase OS=Ralstonia metallidurans... [more]
PTH_LACGA6.387e-1730.95Peptidyl-tRNA hydrolase OS=Lactobacillus gasseri (... [more]
PTH_EHRRW6.387e-1730.21Peptidyl-tRNA hydrolase OS=Ehrlichia ruminantium (... [more]
PTH_EHRRG6.387e-1730.21Peptidyl-tRNA hydrolase OS=Ehrlichia ruminantium (... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10DD09RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263115 ID=DY263115; Name=DY263115; organism=Citrus clementina; type=EST; length=1228bp
ACACATTCACTCACACACGTCCTCTCTGCAGCCACAGCCGCCGCTTACAA
ACGCCCCTCTAACCCTAAGCTGACAAACGCCCACGCCCACGCCCACGCTG
CCGGCGCTGTCACTTTGGTTCAAGTGTGCCGACGCTGCAGCTTCTAGCCG
TTCTCGATTTGCTTCCTCGTTCCAGCTGCTGCGCTGCCTCCGGCTTCGTT
CGCCGTCGTCAGCCGTCGTCAGCCGCACAAGTGAAGTGGAAGGAAACTGA
GAACATTTGAGGAGATGCTTATTAACAGGTTTCTGAGGCGTGGTTTCTGC
ACTGCTGTTGCTCGGCCATGGCTTTTTGTGGGGTTGGGTAACCCGGGAGA
TAAATACAAAGGAACTAGACACAATGTGGGGTTTGAGATGATCGACGCAT
TTGCTGAATCACAAGGGATTTCTATGAACACGGTTCATTGCAAAGCTACT
TTCGGACAAGGTTTTGTTGGTGATGCCCCTGTACTCCTTGCAAAGCCACA
GACTTACATGAATCTGAGCGGTGAATCTACTGGACCACTTGCAGCTTATT
ATAAGTTACCTCTTAATCGTGTTCTTGTGTTTCATGATGACATGGGCTTA
CCTTGTGGAGTGCTTCGTCTGCGCCACAATGGAGGTCATGGAGGCCACAA
TGGGCTGAAGAGTGTGATGAACAACTTTCGAGGTAACCGAGAATTTGCTC
GGCTAAGAATTGGTATTGGGAGGCCTCCTGGTCAAATGGATCCTAAAGCT
TTCTTGCTGCAGAAGTTTAATGCAATAGCTCGAGAGCGAATTGATACTGC
TTTGCAAGAAGGGGTTGAGGTTCTGAAGCTGCTTTTATCTAAAGGCTTGA
CAGAGAGTGCTAGACATTTCAACACCATACAAAAATACAAGCACATAAGA
TTGCAAAACATGCCAGCATGAGCTATTGGTACCTTCGATGACAACCACAA
AAGCACCGAATGGTTCTTCTGGCCGCATTTGTATAAAACTTACAATATTT
AAAATCCCCGAGGAGAGAGGAAGCGAAACCACCCATCCCCATGGAAAGAA
AACTTCAACCAACTTAAGTGAAGGGCTTAACCCAATACCAAACTGAATTG
GTTTGGCTGTTTTTTTTGCAGCAAATCAACCTTCCCAAAATTGGGAAAAT
TTTCCCCATGGCTAGGGCCCGAACCCAAAGGAAAGGGGCTGAACCATATT
AAAAAACAAAAAAACACCACCCCCCTTA
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