DY263130

Overview
NameDY263130
Unique NameDY263130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1221
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263130 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 2.643e-31
Identity = 82/238 (34.45%), Postives = 120/238 (50.42%), Query Frame = 3
Query:  306 TVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGS---IAAHDRKSPDEKTGFAFVRCRETGTG---------PIYVGRAMGQYSRNCLL 983
            TV  +GSG+F +V AAV + PE++    +I I AG Y E V V   K  I F G GR +T+I       D         T+ +A+V      F AR+I+F+NTA     G    QA A R+  D + F  C  +  QDTL   + R +F +C+I G++DFIFGN  ++ +DC++++     G    + A  R  P++ TG     CR  GT          P Y+GR   +YSR  ++
Sbjct:  278 TVADDGSGDFTTVAAAVAAAPEKSNKRFVIHIKAGVYRENVEVTKKKTNIMFLGDGRGKTIITGSRNVVDGST------TFHSATVAAVGERFLARDITFQNTA-----GPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFGNAAAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGTSDLLAVKGTFPTYLGRPWKEYSRTVIM 504          
BLAST of DY263130 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.312e-30
Identity = 82/241 (34.02%), Postives = 121/241 (50.21%), Query Frame = 3
Query:  303 ITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGS-----IAAHDRKSPDEKTGFAFVRCRETGTG---------PIYVGRAMGQYSRNCLL 983
            + V  +GSG++K+V  AV   PE++    +I+I AG Y E V VP  K  I F G G+  T+I       D         T+ +A+V   A    AR+I+F+NTA     G    QA A  +  D + F  C     QDTL   + R +F +C + G++DFIFGNG ++++DC++H  A R GS     + A  R  P++ TG    +CR   T          P Y+GR   +YSR  ++
Sbjct:  273 VVVAADGSGDYKTVSEAVRKAPEKSSKRYVIRIKAGVYRENVDVPKKKTNIMFMGDGKSNTIITASRNVQDGST------TFHSATVVRVAGKVLARDITFQNTA-----GASKHQAVALCVGSDLSAFYRCDMLAYQDTLYVHSNRQFFVQCLVAGTVDFIFGNGAAVFQDCDIH--ARRPGSGQKNMVTAQGRTDPNQNTGIVIQKCRIGATSDLRPVQKSFPTYLGRPWKEYSRTVIM 500          
BLAST of DY263130 vs. ExPASy Swiss-Prot
Match: PME28_ARATH (Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.713e-30
Identity = 80/239 (33.47%), Postives = 125/239 (52.30%), Query Frame = 3
Query:  303 ITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCEL---HSIATRFGSIAAHDRKSPDEKTGFAFVRCRETG---------TGPIYVGRAMGQYSRNCLL 983
            I V  +GSG++K++  A++ VP++     ++ I  G Y E V V  S  ++ F G G D+TVI       D       + TY+TA+V +  ++F A+NI+F+NTA     G    QA A R+  D++ F  C F G QDTL   + R ++++C I G+IDF+FG+  +++++C L     +  +   I AH RK P E TGF    C   G             Y+GR   +YSR  ++
Sbjct:  253 IVVAQDGSGQYKTINEALNFVPKKKNTTFVVHIKEGIYKEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDG------ITTYKTATVAIVGDHFIAKNIAFENTA-----GAIKHQAVAIRVLADESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFGDAAAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGEPDYLAVKEQSKTYLGRPWKEYSRTIIM 480          
BLAST of DY263130 vs. ExPASy Swiss-Prot
Match: PME23_ARATH (Probable pectinesterase/pectinesterase inhibitor 23 OS=Arabidopsis thaliana GN=PME23 PE=2 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 2.238e-30
Identity = 80/262 (30.53%), Postives = 138/262 (52.67%), Query Frame = 3
Query:  276 WIGPVGHRVIT--------------VDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGS---IAAHDRKSPDEKTGFAFVRCRETG---------TGPIYVGRAMGQYSRNCLL 983
            W+GP   R++               V  +G+G+FK++  A+++VP+ N++  +I I  G Y EKVTV    P++TF G G ++T+I     + + G    +++T+ TA++T+  ++F+A+NI  +NTA     G +G QA A R+S D A F  C   G QDTL   + R ++++C + G++DFIFG+ + + ++C++       G    + A  R +  E TG     C  TG             Y+GR   ++SR  ++
Sbjct:  235 WVGPEARRLMAAQGGGPGPVKANAVVAQDGTGQFKTITDALNAVPKGNKVPFIIHIKEGIYKEKVTVTKKMPHVTFIGDGPNKTLITG---SLNFGIG--KVKTFLTATITIEGDHFTAKNIGIENTA-----GPEGGQAVALRVSADYAVFHSCQIDGHQDTLYVHSHRQFYRDCTVSGTVDFIFGDAKCILQNCKIVVRKPNKGQTCMVTAQGRSNVRESTGLVLHGCHITGDPAYIPMKSVNKAYLGRPWKEFSRTIIM 486          
BLAST of DY263130 vs. ExPASy Swiss-Prot
Match: PME64_ARATH (Probable pectinesterase/pectinesterase inhibitor 64 OS=Arabidopsis thaliana GN=PME64 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 7.985e-30
Identity = 81/220 (36.82%), Postives = 119/220 (54.09%), Query Frame = 3
Query:  303 ITVDVNGSGE--FKSVQAAVDSVPERNR-MNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCEL-----HSIATRFG---SIAAHDRKSPDEKTGFAFVRCRETGT 929
            +TV  NG  +  +K+VQ AVDS P+ NR +  +I+I  G Y E V VP  K  + F G G  +TVI         G     + T+++A+V V  + F AR+++ +NTA     G    QA AFR   D +    C F G QDTL   + R ++K+C I+G++DFIFGN  ++++DC++     HS   + G   +I AH R    + TGF F+ C   GT
Sbjct:  289 VTVCKNGGKDCKYKTVQEAVDSAPDTNRTVKFVIRIREGVYEETVRVPFEKKNVVFIGDGMGKTVITGSLNVGQPG-----MTTFESATVGVLGDGFMARDLTIENTA-----GADAHQAVAFRSDSDFSVLENCEFLGNQDTLYAHSLRQFYKQCRIQGNVDFIFGNSAAVFQDCDILIASKHSKLEQGGANNAITAHGRIDASQSTGFVFLNCSINGT 498          

HSP 2 Score: 23.483 bits (49), Expect = 7.985e-30
Identity = 8/27 (29.63%), Postives = 13/27 (48.15%), Query Frame = 1
Query:  952 PWASTREIVYSFLYFDNLVAPRGWG*W 1032
            PW      V+     ++L++P GW  W
Sbjct:  519 PWKEFSRTVFVNCNLESLISPDGWMPW 545          
BLAST of DY263130 vs. ExPASy Swiss-Prot
Match: PME51_ARATH (Probable pectinesterase/pectinesterase inhibitor 51 OS=Arabidopsis thaliana GN=PME51 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.041e-29
Identity = 84/218 (38.53%), Postives = 118/218 (54.13%), Query Frame = 3
Query:  303 ITVDVNGSGEFKSVQAAVDSVPERNRMN-VLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATR--------FGSIAAHDRKSPDEKTGFAFVRCRETGT 929
            +TV  +G   +K+VQ AV++ PE N M   +I+IS G Y E V VP  K  + F G G  +TVI     + + G  G  + TY TA+V V  + F AR+++F+NTA     G    QA AFR   D +    C F G QDTL     R ++K C I+G++DFIFGN  ++++DCE+  IA R          ++ A  R  P + TGF F+ C   GT
Sbjct:  241 VTVCKDGKCGYKTVQDAVNAAPEDNGMRKFVIKISEGVYEENVIVPFEKKNVVFIGDGMGKTVITG---SLNAGMPG--ITTYNTATVGVVGDGFMARDLTFQNTA-----GPDAHQAVAFRSDSDFSLIENCEFLGNQDTLYAHGLRQFYKNCRIQGNVDFIFGNSAAVFQDCEI-LIAPRQINPEKGEKNAVTAQGRIDPSQSTGFVFLNCLINGT 447          

HSP 2 Score: 21.557 bits (44), Expect = 1.041e-29
Identity = 8/27 (29.63%), Postives = 11/27 (40.74%), Query Frame = 1
Query:  952 PWASTREIVYSFLYFDNLVAPRGWG*W 1032
            PW      V+     + L+ P GW  W
Sbjct:  468 PWKDYSRTVFIGCNLEALITPDGWLPW 494          
BLAST of DY263130 vs. ExPASy Swiss-Prot
Match: PME22_ARATH (Putative pectinesterase/pectinesterase inhibitor 22 OS=Arabidopsis thaliana GN=PME22 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 4.220e-29
Identity = 79/242 (32.64%), Postives = 128/242 (52.89%), Query Frame = 3
Query:  288 VGHRVITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHS---IATRFGSIAAHDRKSPDEKTGFAFVRCRETGTGPIYVGRAMGQYSRNCLLIPLL*QL 1004
            V H    V ++G G+++++  A++  P  +    +I +  G Y E + +   K  I   G G  +T+I   DR   +G     L T++TA+V V    F A++I+F+NTA     G Q  QA A R+  D++ F  C   G QDTL   + R ++++C I G+IDFIFGNG ++ ++C++++   +  +  +I A  RKSP++ TGF         T P Y+GR    YSR   +   + QL
Sbjct:  236 VMHPNTVVAIDGKGKYRTINEAINEAPNHSTKRYVIYVKKGVYKENIDLKKKKTNIMLVGDGIGQTIITG-DRNFMQG-----LTTFRTATVAVSGRGFIAKDITFRNTA-----GPQNRQAVALRVDSDQSAFYRCSVEGYQDTLYAHSLRQFYRDCEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPNQNTGFVIQNSYVLATQPTYLGRPWKLYSRTVYMNTYMSQL 466          
BLAST of DY263130 vs. ExPASy Swiss-Prot
Match: PME_DAUCA (Pectinesterase OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 9.401e-29
Identity = 82/241 (34.02%), Postives = 119/241 (49.38%), Query Frame = 3
Query:  303 ITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGS-----IAAHDRKSPDEKTGFAFVRCRETGTG---------PIYVGRAMGQYSRNCLL 983
            + V  +GSG++K+V  AV + PE ++   +I+I AG Y E V VP  K  I F G GR  T+I       D         T+ +A+V      F AR+I+F+NTA     G    QA A R+  D + F  C     QD+L   + R +F  C+I G++DFIFGN   + +DC++H  A R GS     + A  R  P++ TG    + R   T          P Y+GR   +YSR  ++
Sbjct:    9 VVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDGST------TFNSATVAAVGAGFLARDITFQNTA-----GAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIH--ARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVM 236          
BLAST of DY263130 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 9.401e-29
Identity = 79/239 (33.05%), Postives = 117/239 (48.95%), Query Frame = 3
Query:  303 ITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGS---IAAHDRKSPDEKTGFAFVRCR---------ETGTGPIYVGRAMGQYSRNCLL 983
            + V  +GSG FK+V A+V + P+      +I+I AG Y E V V      I F G GR RT+I       D         T+++A+V V    F AR+I+F+NTA     G    QA A R+  D + F  C     QDTL   + R +F  C I G++DFIFGN  ++ ++C++H+     G    + A  R  P++ TG    + R           G+ P Y+GR   +YSR  ++
Sbjct:  274 VVVAADGSGNFKTVAASVAAAPQGGTKRYIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGST------TFKSATVAVVGEGFLARDITFQNTA-----GPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIM 501          
BLAST of DY263130 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 9.401e-29
Identity = 82/257 (31.91%), Postives = 121/257 (47.08%), Query Frame = 3
Query:  276 WIGPVGHRVI---------TVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGS---IAAHDRKSPDEKTGFAFVRCR---------ETGTGPIYVGRAMGQYSRNCLL 983
            W+ P   R++          V  +GSG FK+V AAV + P+      +I+I AG Y E V V      I F G GR RT+I       D         T+++A+  V    F AR+I+F+NTA     G    QA A R+  D + F  C     QDTL   + R +F  C I G++DFIFGN  ++ ++C++H+     G    + A  R  P++ TG    + R           G+ P Y+GR   +YSR  ++
Sbjct:  256 WLSPGDRRLLQSSSVTPNAVVAADGSGNFKTVAAAVAAAPQGGTKRYIIRIKAGVYRENVEVTKKHKNIMFIGDGRTRTIITGSRNVVDGST------TFKSATAAVVGEGFLARDITFQNTA-----GPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIM 501          
The following BLAST results are available for this feature:
BLAST of DY263130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PME2_ARATH2.643e-3134.45Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PMEU1_SOLLC1.312e-3034.02Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME28_ARATH1.713e-3033.47Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME23_ARATH2.238e-3030.53Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME64_ARATH7.985e-3036.82Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME51_ARATH1.041e-2938.53Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME22_ARATH4.220e-2932.64Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME_DAUCA9.401e-2934.02Pectinesterase OS=Daucus carota PE=1 SV=1[more]
PME3_CITSI9.401e-2933.05Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI9.401e-2931.91Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA10DE12RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263130 ID=DY263130; Name=DY263130; organism=Citrus clementina; type=EST; length=1221bp
CAAATTTGTTCGGCTTATAAATGCTTCTCTCTTAAATTTCCAACTTCCAT
TGTACTTGCACTCATTCAATTAAATTTCTCGGAGCCTCTTCGAAAGCAGA
TTACACACGTTCTCTCTGACAATTTTAAATAATGCTGTTTAATTTAATGT
CATCTGTTACTTGTTTTTCGTTCTTTCACTTGTACATTGTTACTTCTTTC
TTGTCTCTTGCATTGTTTCAGGTTACGATCTCGGCCACAGCTCAAGCTGC
AAATTCTACTAAGCACCATCACATGTGGATTGGACCCGTCGGCCACCGTG
TAATCACCGTTGATGTTAATGGGTCCGGCGAGTTCAAATCGGTCCAAGCT
GCCGTTGATTCCGTCCCTGAAAGAAACAGAATGAACGTGCTTATTCAAAT
TAGCGCAGGTTGTTACATAGAGAAGGTGACGGTGCCAGTGTCGAAACCGT
ACATCACGTTTCAAGGTGCAGGGAGGGATCGGACGGTGATCGAGTGGCAT
GATCGAGCATGTGATCGTGGGGCTAATGGCCAGCAGCTGCGCACTTACCA
GACAGCTTCTGTAACTGTTTTTGCTAATTATTTCTCTGCTAGGAATATTA
GCTTCAAGAACACAGCGCCAGCACCACTACCAGGAATGCAAGGGTGGCAA
GCGGCGGCGTTTAGGATATCCGGAGACAAGGCTTACTTCTCAGGCTGTGG
ATTTTATGGGGCACAGGACACTCTTTGTGACGACGCAGGGCGGCATTACT
TCAAGGAATGTTACATTGAAGGCTCCATCGACTTTATTTTCGGGAATGGC
CGGTCCATGTACAAAGACTGTGAGCTGCATTCAATAGCCACAAGATTCGG
GTCAATTGCGGCCCACGATAGAAAATCGCCGGATGAGAAGACAGGATTTG
CTTTTGTACGATGCAGGGAAACGGGGACCGGCCCCATATATGTGGGCCGA
GCCATGGGCCAGTACTCGAGAAATTGTTTACTCATTCCTTTACTTTGACA
ACTTGGTTGCTCCACGGGGGTGGGGATGATGGGGACCACATCATAAACAA
AAACAAGACTGCCTTTTTTCCGAAGGGAAAAGTTGTTGGGGGGCCGGGAA
CAACAAAACCTTCCCGGGCGGGCCCCGGGGGCTAAAAAAACCGGGAATTA
AAAAAACCACCCCCCTCCTTTTTTTTTGGTAAAAAAGATTTTTTTACAGG
GGGGGAGGGGGCGTGGGGAAT
back to top