DY263130

Overview
NameDY263130
Unique NameDY263130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1221
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263130 vs. ExPASy Swiss-Prot
Match: PME1_RALSO (Pectinesterase OS=Ralstonia solanacearum GN=pme PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.965e-18
Identity = 75/247 (30.36%), Postives = 110/247 (44.53%), Query Frame = 3
Query:  309 VDVNGSGEFKSVQAAVDSVPERNRM-NVLIQISAGCYIEKVTVPVSKPYITFQG--AGRDRTVIEWHD-----------RACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAG------RHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAH----DRKSPDEKTGFAFVRCRETGTG-----PIYVGRAMGQ 962
            V  +G+ ++K+VQAA+D+      +    I + AG Y E V VP S P IT  G  A    T I +++             C   ++   + T ++A+  V A+ F ARN++FKN+            A A  + GDKA        G QDTL   A       R YFK  +I+G  DFIFG G +++  C +   A R G+ AA        +P    GF  +      TG      +++GRA  Q
Sbjct:   82 VAADGTAQYKTVQAAIDAAVNAGGVARRYISVKAGIYNELVCVPESAPPITLYGLDANAGNTQIVYNNANPTPASGAKTNPCMGTSSNATVGTLRSATAMVRASDFHARNLTFKNSYVEGTYADNNQSAVALAVRGDKAILENVSVIGNQDTLFVGATSTTTVIRAYFKNSFIQGDTDFIFGAGTAVFHGCTIQYTAARLGAKAASYIFAPSTAPGNPYGFLAINSTFNATGNPPNNSLHLGRAWDQ 328          
BLAST of DY263130 vs. ExPASy Swiss-Prot
Match: PME1_SOLLC (Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9 PE=1 SV=5)

HSP 1 Score: 92.8189 bits (229), Expect = 4.377e-18
Identity = 61/236 (25.85%), Postives = 111/236 (47.03%), Query Frame = 3
Query:  318 NGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGS-----IAAHDRKSPDEKTGFAFVRCRETGTG---------PIYVGRAMGQYSRNCLL 983
            +G+G+++++  AV + P++++   +I +  G Y E V V  +K  +   G G   T I       D         T+++A++      F  ++I  +NTA     G    QA A R+  D +  + C     QDTL   + R ++++ Y+ G++DFIFGN   +++ C+L  +A + G      + A  R  P++ TG +   C    +          P Y+GR   +YSR  ++
Sbjct:  239 DGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGST------TFRSATLAAVGQGFILQDICIQNTA-----GPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQL--VARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVM 461          
BLAST of DY263130 vs. ExPASy Swiss-Prot
Match: PME54_ARATH (Probable pectinesterase/pectinesterase inhibitor 54 OS=Arabidopsis thaliana GN=PME54 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.056e-17
Identity = 64/183 (34.97%), Postives = 92/183 (50.27%), Query Frame = 3
Query:  465 GAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCEL-----HSIATRFGSIAAHDRKSPDEKTGFAFVRCR---ETGTGPI------YVGRAMGQYSR 971
            G G+D TVI   D A      G  +    TA++TV  + F AR+I  KN A     G +G QA A  I+ D++    C   G QDTL   A R +++EC I G+IDFIFGN  ++++ C +     H +   +  I A+ R    + TGFA   CR   ++   P+      Y+GR   +YSR
Sbjct:  252 GNGKDLTVIVGDDSA----TGGTSVP--DTATMTVTGDGFIARDIGIKNIA-----GPRGHQAIALSITSDQSVLYRCSISGYQDTLYAAALRQFYRECDIYGTIDFIFGNAAAVFQSCNIFLRRPHGVKA-YNVILANGRTDQRQNTGFALHSCRIRTDSDLSPVKHKYSSYLGRPWRKYSR 422          

HSP 2 Score: 23.8682 bits (50), Expect = 1.056e-17
Identity = 8/27 (29.63%), Postives = 11/27 (40.74%), Query Frame = 1
Query:  952 PWASTREIVYSFLYFDNLVAPRGWG*W 1032
            PW      +    Y D+ +A  GW  W
Sbjct:  416 PWRKYSRAIVMESYIDDAIAEGGWAGW 442          
BLAST of DY263130 vs. ExPASy Swiss-Prot
Match: PME3_SOLLC (Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.321e-17
Identity = 59/244 (24.18%), Postives = 113/244 (46.31%), Query Frame = 3
Query:  288 VGHRVITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCEL---HSIATRFGSIAAHDRKSPDEKTGFAFVRCRETGTGPI---------YVGRAMGQYSRNCLL 983
            + +RV+  D  G+G+++++  AV + P++N+   +I +  G Y E V V   K  +   G G + T+I       D         T+ + ++      F  ++I  +NTA     G +  QA A R+  D +  + C     QDTL   + R ++++ Y+ G++DFIFGN   +++ C++        +   + A  R  P++ TG +   C    +  +         Y+GR   ++SR  ++
Sbjct:  230 IANRVVAQD--GTGDYQTLAEAVAAAPDKNKTRYVIYVKMGIYKENVVVTKKKMNLMIVGDGMNATIITGSLNVVDGS-------TFPSNTLAAVGQGFILQDICIQNTA-----GPEKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQIVARKPNKRQKNMVTAQGRTDPNQATGTSIQFCDIIASPDLEPVMNEYKTYLGRPWKKHSRTVVM 459          
BLAST of DY263130 vs. ExPASy Swiss-Prot
Match: PMEA_ERWCH (Pectinesterase A OS=Erwinia chrysanthemi GN=pemA PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.137e-16
Identity = 61/221 (27.60%), Postives = 112/221 (50.68%), Query Frame = 3
Query:  204 SLALFQVTISATAQAANSTKHHHMWIGPVGHRVITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPL---------PGMQGWQAAAFRI--SGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHS 833
            +LAL  +  ++  QA  +T ++          V++   +    FK++  A+ S P  +   V++ I  G Y E++T+  ++  +  +G  R+  VI     A    ++G +  T  ++++T+ A  FSA++++ +N    P            ++  QA A  +  SGD+AYF      G QDTL    GR +F +C I G++DFIFG+G +++ +C+L S
Sbjct:    8 TLALSLIIAASVHQAQAATTYN---------AVVSKSSSDGKTFKTIADAIASAPAGSTPFVIL-IKNGVYNERLTI--TRNNLLLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVS 216          
BLAST of DY263130 vs. ExPASy Swiss-Prot
Match: PMEA_DICD3 (Pectinesterase A OS=Dickeya dadantii (strain 3937) GN=pemA PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.097e-16
Identity = 61/221 (27.60%), Postives = 112/221 (50.68%), Query Frame = 3
Query:  204 SLALFQVTISATAQAANSTKHHHMWIGPVGHRVITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIEWHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPL---------PGMQGWQAAAFRI--SGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHS 833
            +LAL  +  ++  QA  +T ++          V++   +    FK++  A+ S P  +   V++ I  G Y E++T+  ++  +  +G  R+  VI     A    ++G +  T  ++++T+ A  FSA++++ +N    P            ++  QA A  +  SGD+AYF      G QDTL    GR +F +C I G++DFIFG+G +++ +C+L S
Sbjct:    8 TLALSLIIAASVHQAQAATTYN---------AVVSKSSSDGKTFKTIADAIASAPAGSTPFVIL-IKNGVYNERLTI--TRNNLHLKGESRNGAVIAAATAAGTLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVS 216          
BLAST of DY263130 vs. ExPASy Swiss-Prot
Match: PME_ASPTU (Pectinesterase OS=Aspergillus tubingensis GN=pme1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.485e-13
Identity = 75/279 (26.88%), Postives = 117/279 (41.94%), Query Frame = 3
Query:  186 IVTSFLSLALFQVTISATAQAANSTKHHHMWIGPVGHRVITVDVNGSGEFKSVQAAVDSVPERNRMNVLIQISAGCYIEKVTVPVSKPYITFQGAGRDRTVIE------WHDRACDRGANGQQLRTYQTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFG-NGRSMYKDCELHSI-ATRFGSIAAHDRKSPDE-------KTGFAFVRCRETGTGPIYVGRAMGQYSRNC 977
            +V S L+  LF    +ATA AA+          P G  V+       G++ ++ AAVD++   +     I I  G Y E+V +P     +   G   D T          H  A     N  +     TA++  +A   +  N++  NT      G    QA A      +  +  C F G QDTL  + G   +   YIEG++DFIFG + R+ + +C++  +      SI A+ R S  +       K+  A     +  +G  Y+GR   QY+R C
Sbjct:    1 MVKSILASVLF----AATALAASRMT------APSGAIVVA---KSGGDYDTISAAVDALSTTSTETQTIFIEEGSYDEQVYIPALSGKLIVYGQTEDTTTYTSNLVNITHAIALADVDNDDE-----TATLRNYAEGSAIYNLNIANTC-----GQACHQALAVSAYASEQGYYACQFTGYQDTLLAETGYQVYAGTYIEGAVDFIFGQHARAWFHECDIRVLEGPSSASITANGRSSESDDSYYVIHKSTVAAADGNDVSSGTYYLGRPWSQYARVC 256          
The following BLAST results are available for this feature:
BLAST of DY263130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PME1_RALSO1.965e-1830.36Pectinesterase OS=Ralstonia solanacearum GN=pme PE... [more]
PME1_SOLLC4.377e-1825.85Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9... [more]
PME54_ARATH1.056e-1734.97Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME3_SOLLC6.321e-1724.18Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 P... [more]
PMEA_ERWCH3.137e-1627.60Pectinesterase A OS=Erwinia chrysanthemi GN=pemA P... [more]
PMEA_DICD34.097e-1627.60Pectinesterase A OS=Dickeya dadantii (strain 3937)... [more]
PME_ASPTU2.485e-1326.88Pectinesterase OS=Aspergillus tubingensis GN=pme1 ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10DE12RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263130 ID=DY263130; Name=DY263130; organism=Citrus clementina; type=EST; length=1221bp
CAAATTTGTTCGGCTTATAAATGCTTCTCTCTTAAATTTCCAACTTCCAT
TGTACTTGCACTCATTCAATTAAATTTCTCGGAGCCTCTTCGAAAGCAGA
TTACACACGTTCTCTCTGACAATTTTAAATAATGCTGTTTAATTTAATGT
CATCTGTTACTTGTTTTTCGTTCTTTCACTTGTACATTGTTACTTCTTTC
TTGTCTCTTGCATTGTTTCAGGTTACGATCTCGGCCACAGCTCAAGCTGC
AAATTCTACTAAGCACCATCACATGTGGATTGGACCCGTCGGCCACCGTG
TAATCACCGTTGATGTTAATGGGTCCGGCGAGTTCAAATCGGTCCAAGCT
GCCGTTGATTCCGTCCCTGAAAGAAACAGAATGAACGTGCTTATTCAAAT
TAGCGCAGGTTGTTACATAGAGAAGGTGACGGTGCCAGTGTCGAAACCGT
ACATCACGTTTCAAGGTGCAGGGAGGGATCGGACGGTGATCGAGTGGCAT
GATCGAGCATGTGATCGTGGGGCTAATGGCCAGCAGCTGCGCACTTACCA
GACAGCTTCTGTAACTGTTTTTGCTAATTATTTCTCTGCTAGGAATATTA
GCTTCAAGAACACAGCGCCAGCACCACTACCAGGAATGCAAGGGTGGCAA
GCGGCGGCGTTTAGGATATCCGGAGACAAGGCTTACTTCTCAGGCTGTGG
ATTTTATGGGGCACAGGACACTCTTTGTGACGACGCAGGGCGGCATTACT
TCAAGGAATGTTACATTGAAGGCTCCATCGACTTTATTTTCGGGAATGGC
CGGTCCATGTACAAAGACTGTGAGCTGCATTCAATAGCCACAAGATTCGG
GTCAATTGCGGCCCACGATAGAAAATCGCCGGATGAGAAGACAGGATTTG
CTTTTGTACGATGCAGGGAAACGGGGACCGGCCCCATATATGTGGGCCGA
GCCATGGGCCAGTACTCGAGAAATTGTTTACTCATTCCTTTACTTTGACA
ACTTGGTTGCTCCACGGGGGTGGGGATGATGGGGACCACATCATAAACAA
AAACAAGACTGCCTTTTTTCCGAAGGGAAAAGTTGTTGGGGGGCCGGGAA
CAACAAAACCTTCCCGGGCGGGCCCCGGGGGCTAAAAAAACCGGGAATTA
AAAAAACCACCCCCCTCCTTTTTTTTTGGTAAAAAAGATTTTTTTACAGG
GGGGGAGGGGGCGTGGGGAAT
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