DY263184

Overview
NameDY263184
Unique NameDY263184
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1214
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263184 vs. ExPASy Swiss-Prot
Match: WIPI2_HUMAN (WD repeat domain phosphoinositide-interacting protein 2 OS=Homo sapiens GN=WIPI2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.277e-17
Identity = 59/175 (33.71%), Postives = 94/175 (53.71%), Query Frame = 1
Query:  412 IVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQI-ETLANPRGLCCLSHHSSTSVLACPGLQR-GQVRI-EHFGLNMIKLINAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGCTRLQEVRRGVDR 927
            IVE LF  +++A+V     S   P K+ +    +   I  +++ + + +VKL+R R++V LE  +Y+++  D+K+LH I ET  NP GLC LS ++    LA PG    G+V++ +   L    +I AHDS +A                +GT+IR+F+     +L E RRGV R
Sbjct:   78 IVERLFSSSLVAIV-----SLKAPRKLKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLYIHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKR 247          
BLAST of DY263184 vs. ExPASy Swiss-Prot
Match: ATG18_PICGU (Autophagy-related protein 18 OS=Pichia guilliermondii GN=ATG18 PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 8.197e-17
Identity = 47/133 (35.34%), Postives = 76/133 (57.14%), Query Frame = 1
Query:  292 VSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSG-GFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLS 687
            +++NQD  C A G + G+ I+   PF + +  D   G    IVEML+  +++ +V  G+ +   P K+ I +  +   I +  F S +  VKL+R R++V+LE +IY+Y    +KLLH IET  N  G+C +S
Sbjct:   27 ITFNQDGSCIAVGNNKGYSIFTTNPFTKCY--DSPPGEAIGIVEMLYSTSLVVVVALGEETGSSPRKLKIINTKRGSTICDLVFPSTILKVKLTRSRMIVLLEEQIYLYDISTMKLLHTIETSPNMAGICAIS 157          
BLAST of DY263184 vs. ExPASy Swiss-Prot
Match: ATG18_AJECN (Autophagy-related protein 18 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=ATG18 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.197e-17
Identity = 67/231 (29.00%), Postives = 107/231 (46.32%), Query Frame = 1
Query:  376 TFRRD---LKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQR-----------------------GQVRI-EHFGLNMIKLINAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGCTRLQEVRRGVDRAKI--------TVLLCLQTS 963
            TF +D   L  G   I+EMLF  +++AL+         P ++ I +  +   I E  F + V +V+L+R R+V+VLE +IY+Y    +KLL+ IET  NP  +C LS  S    LA P  Q+                       G+V I +   L  I ++ AH S ++C               +GT+IR+F+     +L + RRG   ++I        + LLC+ ++
Sbjct:    7 TFNQDYSYLAVGNIAILEMLFSTSLVALI-------LSPRRLQITNTKRQSTICELTFPTTVLAVRLNRKRLVIVLEDQIYLYDIQTMKLLYTIETSPNPNAICALSPSSENCYLAYPLPQKAPPSSFTPPSHAPPSSAHISPTSGEVLIFDTLKLEAINVVEAHKSPLSCLAINTEGTLLATASDKGTIIRVFSVPDAQKLYQFRRGSMPSRIFSMSFNITSTLLCVSSA 230          
BLAST of DY263184 vs. ExPASy Swiss-Prot
Match: ATG21_SCHPO (Autophagy-related protein 21 OS=Schizosaccharomyces pombe GN=atg21 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.656e-14
Identity = 55/220 (25.00%), Postives = 103/220 (46.82%), Query Frame = 1
Query:  283 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVI-IWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVDLKLLHQIETLANPRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNM-IKLINAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGCTRLQEVRRGVDRAKI 936
            ++  SWNQD G  + G+  G+++Y   PF   F +  K+ G  I EML+  ++LA V     S    T+++ + D  +   +    + S V SV+ + +R+VV+++  IYVY+  +++L++ + T  +   +   + H +      P    G + +      + + LI+ H S +                 +GT+IR+  T     + E+RRG   A I
Sbjct:    5 ILYCSWNQDRGFLSIGSENGYQVYRSNPFTLCFSK--KANGASICEMLYESSLLAFVNISPES----TRLLKLVDIKRDIVLCRIFYPSPVLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNT--SKGNVIAFAVHENYVAYNSP-TNPGDIYLASLDTAIPVTLIHCHSSAVQVVDFHPRGHLIATASAKGTVIRVITTSDGELVTELRRGYIPASI 215          

HSP 2 Score: 27.7202 bits (60), Expect = 6.656e-14
Identity = 11/25 (44.00%), Postives = 17/25 (68.00%), Query Frame = 3
Query:  939 SIALSPNVQWLAVASDKGTVHIFSL 1013
            SI+  P   +LA AS+ GT+H+F +
Sbjct:  217 SISFHPVEPFLACASENGTIHVFKI 241          
BLAST of DY263184 vs. ExPASy Swiss-Prot
Match: HSV2_CANAL (SVP1-like protein 2 OS=Candida albicans GN=HSV2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.354e-11
Identity = 50/141 (35.46%), Postives = 69/141 (48.94%), Query Frame = 1
Query:  301 NQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSG-----GFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSF-VDLKLLHQIETLANPRGLCCLSHHSSTS 705
            N   G   + +S G        +K T +    SG     G   + ML R N LAL+G G+N ++P  K+IIWDD + +      F + V +V LSR RI+VVL  +I VY F    K      T+ NP G+  LS +S  S
Sbjct:   96 NNSTGSNGSVSSSGSNNETTLGYKSTHKSASGSGSGSGSGIGHISMLHRTNYLALIGGGENPKFPINKLIIWDDLKRKTSLSLEFDTPVLNVLLSRVRIIVVLIDQIIVYGFAAPPKKFQTFNTINNPLGIADLSVNSQQS 236          
BLAST of DY263184 vs. ExPASy Swiss-Prot
Match: HSV2_KLULA (SVP1-like protein 2 OS=Kluyveromyces lactis GN=HSV2 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 3.522e-11
Identity = 57/223 (25.56%), Postives = 90/223 (40.36%), Query Frame = 1
Query:  283 LISVSWNQDYGCFAAGTSCGFRIYNCEPFKETFRRDLKSGGFRIVEMLFRCNILALVGAGDNSQYPPTKVIIWDDHQSRCIGEFAFRSDVRSVKLSRDRIVVVLEHKIYVYSFVD--LKLLHQIE---TLANPRGLCCLSHHSSTSVLACPGLQRGQVRIEHFGLNMIKLINAHDSHIACFXXXXXXXXXXXXXXRGTLIRIFNTVGCTRLQEVRRGVDRAKI 936
            ++   +NQD  C    T   F IYN  P K    +++   G   + ML R N +A V       +      IWDD + + I      + V+ + LSR+ IVV     I ++ F +   K+   I+         GL   S+  +   +    LQ    ++   G+    L+ AH + +                  GTLIR+F T     ++E RRG+DR  I
Sbjct:   17 IVDYEFNQDQSCLIVSTPKSFDIYNVHPLKRIMSQEMPDAG--TIRMLHRTNYIAFVSTKKELLH------IWDDVKKQDITRVKLDAAVKDLFLSREFIVVSQGDVISIFKFGNPWNKITEDIKFGGVCEFANGLLVYSNEFNLGQIHVTRLQTDAEQVVGKGV----LVKAHANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTSI 227          

HSP 2 Score: 25.7942 bits (55), Expect = 3.522e-11
Identity = 11/21 (52.38%), Postives = 15/21 (71.43%), Query Frame = 3
Query:  951 SPNVQWLAVASDKGTVHIFSL 1013
            SP+   LAV SDK T+H+F +
Sbjct:  233 SPDGSKLAVVSDKWTLHVFEV 253          
The following BLAST results are available for this feature:
BLAST of DY263184 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
WIPI2_HUMAN6.277e-1733.71WD repeat domain phosphoinositide-interacting prot... [more]
ATG18_PICGU8.197e-1735.34Autophagy-related protein 18 OS=Pichia guilliermon... [more]
ATG18_AJECN8.197e-1729.00Autophagy-related protein 18 OS=Ajellomyces capsul... [more]
ATG21_SCHPO6.656e-1425.00Autophagy-related protein 21 OS=Schizosaccharomyce... [more]
HSV2_CANAL1.354e-1135.46SVP1-like protein 2 OS=Candida albicans GN=HSV2 PE... [more]
HSV2_KLULA3.522e-1125.56SVP1-like protein 2 OS=Kluyveromyces lactis GN=HSV... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11AB11RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263184 ID=DY263184; Name=DY263184; organism=Citrus clementina; type=EST; length=1214bp
AGCGAAAGAGAAAATTTGATCTGATGATCATTAATTTGATTTCTCATATC
ACAGCATCAAGGGGGTGCCACTGAAATTATTCACAATCGAGAAGATTTTC
ATCTTTGATTGCTGCTGCTGCTGCTGACCGTTTCTTCGTCCCACATGACT
TCAACTGTTTCGACATCTCGAGAAATTCTTCCACCGGGCCCCTTTGGATC
CCCCAATGCTGGCGCTTCGGCTTCGGCTTCGGCTTCATTTGGCCACCCGC
AAACGGCGTTCAGTGATGTTGATGAAATTGAGTTGATCTCTGTGTCTTGG
AACCAGGACTATGGTTGTTTTGCCGCTGGAACTAGTTGTGGGTTTCGAAT
TTATAATTGTGAGCCGTTTAAGGAAACTTTTAGACGTGATTTGAAAAGTG
GTGGGTTTAGGATTGTTGAGATGTTGTTTCGTTGTAATATATTGGCACTC
GTTGGTGCTGGGGATAATTCTCAGTATCCTCCTACTAAAGTTATTATTTG
GGATGATCATCAGAGCAGGTGCATTGGTGAGTTTGCGTTTAGGTCTGATG
TTCGCTCTGTGAAATTGAGTAGGGATCGAATTGTGGTTGTTCTTGAGCAT
AAGATATATGTTTATAGTTTTGTTGATCTCAAGTTGCTTCATCAGATTGA
GACTCTTGCGAATCCGAGGGGGCTTTGTTGTCTTTCTCATCATTCGAGTA
CTTCTGTGTTGGCTTGCCCGGGTCTCCAACGTGGACAGGTTCGCATTGAG
CACTTTGGGCTCAATATGATAAAGCTAATAAATGCTCATGATTCTCATAT
TGCGTGCTTTACCCTCACATTGGATGGCCTGCTTCTTGCTACTGCTAGTA
CCAGGGGCACTTTGATAAGAATTTTCAACACGGTGGGATGTACTCGCTTG
CAAGAGGTTCGAAGAGGTGTTGACAGAGCAAAGATTACAGTATTGCTCTG
TCTCCAAACGTCCAATGGTTGGCTGTGGCAAGTGACAAAGGGACTGTTCA
TATATTCAGTCTTCAGGGTTAAAAGTGGTGGGCAAGGACTCCTCCTCCCT
CTCTTTCTATTCCTTTCTCAAAATAAAAAAACTTCCTAACCATTTCTTCT
TTCCTTTGAACCTTTTTTTTTTCTCCAGAACACGGGGGCCCAAACCTGGG
TTCATCCTTTTTCTTTTTTTTGAAAGAGAAGTTTTCTACAAAAAAATTTT
TTACCCCAAAAAAT
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