DY263224

Overview
NameDY263224
Unique NameDY263224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_SYNJA (10 kDa chaperonin OS=Synechococcus sp. (strain JA-3-3Ab) GN=groS PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.164e-14
Identity = 42/77 (54.55%), Postives = 56/77 (72.73%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRGEDSWKN*L-DISVKPGTQVIYSKYAG 1012
            + +  +++KPLGDRVLVKI   +EKT GGIFLP TA+ KPQ  EVVAVG G+ + +  L  + +K G +V+YSKYAG
Sbjct:    4 VTLNVSTLKPLGDRVLVKIAQQDEKTAGGIFLPDTAKEKPQVGEVVAVGPGKRNDEGKLIPMELKAGDRVLYSKYAG 80          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_THEPX (10 kDa chaperonin OS=Thermoanaerobacter sp. (strain X514) GN=groS PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 7.103e-14
Identity = 41/84 (48.81%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  806 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ  EVVAVG G+      +++ VK G +VI+SKYAG     +G ++  L+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRE 86          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_THEP3 (10 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=groS PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 7.103e-14
Identity = 41/84 (48.81%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  806 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ  EVVAVG G+      +++ VK G +VI+SKYAG     +G ++  L+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRE 86          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_ANASP (10 kDa chaperonin OS=Anabaena sp. (strain PCC 7120) GN=groS PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.212e-13
Identity = 39/79 (49.37%), Postives = 56/79 (70.89%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVG---RGEDSWKN*LDISVKPGTQVIYSKYAG 1012
            +++  +++KPLGDRV VK+   EEKT GG++LP TA+ KPQ  EVVA+G   R +D  +   ++ VK G +V+YSKYAG
Sbjct:    4 VSLSVSTVKPLGDRVFVKVSASEEKTAGGLYLPDTAKEKPQVGEVVALGAGKRNDDGSRQ--ELEVKVGDKVLYSKYAG 80          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_CYAP8 (10 kDa chaperonin OS=Cyanothece sp. (strain PCC 8801) GN=groS PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.582e-13
Identity = 42/94 (44.68%), Postives = 58/94 (61.70%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVG---RGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +++  +++KPLGDRV VK+   EEKT GGI LP TA+ KPQ  E+V VG   R +D  ++  +  VK G +V+YSKYAG      G  +  L E
Sbjct:    4 ISINVSTVKPLGDRVFVKVSASEEKTAGGILLPDTAKEKPQIGEIVTVGPGKRNDDGSRS--EPEVKVGDKVLYSKYAGTDIKLGGEDYVLLSE 95          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_NOSP7 (10 kDa chaperonin OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=groS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.699e-13
Identity = 38/79 (48.10%), Postives = 55/79 (69.62%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVG---RGEDSWKN*LDISVKPGTQVIYSKYAG 1012
            +++  +++KPL DRV VK+   EEKT GG++LP TA+ KPQ  EVVA+G   R ED  +   ++ +K G +V+YSKYAG
Sbjct:    4 LSLSVSTVKPLSDRVFVKVNASEEKTAGGLYLPDTAKEKPQVGEVVALGPGKRNEDGSRQ--ELEIKVGDKVLYSKYAG 80          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_CYAP4 (10 kDa chaperonin OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=groS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.604e-13
Identity = 40/79 (50.63%), Postives = 54/79 (68.35%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVG---RGEDSWKN*LDISVKPGTQVIYSKYAG 1012
            +++  +++KPLGDRV VK+   EEKT GGI LP TA+ KPQ  E+VAVG   R +D  +   +  VK G +V+YSKYAG
Sbjct:    4 VSLSVSTVKPLGDRVFVKVSASEEKTAGGILLPDTAKEKPQVGEIVAVGPGKRNDDGSRQ--EPEVKIGDKVLYSKYAG 80          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_THETN (10 kDa chaperonin OS=Thermoanaerobacter tengcongensis GN=groS PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 6.013e-13
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 2
Query:  806 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +KPLGDRV+VK+   EE T GG+ LP TA+ KPQ  EVVAVG G+      ++  VK G +VI+SKYAG     +G ++  L+E
Sbjct:    3 LKPLGDRVVVKVIQSEEVTKGGVILPGTAKEKPQQGEVVAVGPGQYIDGKRVEPEVKVGDRVIFSKYAGTEVKLDGEEYLLLRE 86          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_SYNY3 (10 kDa chaperonin OS=Synechocystis sp. (strain PCC 6803) GN=groS PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 6.013e-13
Identity = 42/94 (44.68%), Postives = 56/94 (59.57%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVG---RGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +++  +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ  EVV VG   R +D   +   + VK G +V+YSKYAG      G  +  L E
Sbjct:    4 ISINVSTVKPLGDRVFVKVSPAEEKTAGGILLPDNAKEKPQIGEVVQVGPGKRNDDGTYS--PVEVKVGDKVLYSKYAGTDIKLGGDDYVLLTE 95          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_THEVL (10 kDa chaperonin OS=Thermosynechococcus vulcanus GN=groS PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.340e-12
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRG---EDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +++  +++KPLGDR+ VK+   EE+T GGI LP  A+ KPQ  EV AVG G   ED  +  +D  VK G +V+YSKYAG      G  +  L E
Sbjct:    4 VSLSVSTVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMD--VKVGDKVLYSKYAGTEVKLAGEDYVLLSE 95          
The following BLAST results are available for this feature:
BLAST of DY263224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CH10_SYNJA4.164e-1454.5510 kDa chaperonin OS=Synechococcus sp. (strain JA-... [more]
CH10_THEPX7.103e-1448.8110 kDa chaperonin OS=Thermoanaerobacter sp. (strai... [more]
CH10_THEP37.103e-1448.8110 kDa chaperonin OS=Thermoanaerobacter pseudethan... [more]
CH10_ANASP1.212e-1349.3710 kDa chaperonin OS=Anabaena sp. (strain PCC 7120... [more]
CH10_CYAP81.582e-1344.6810 kDa chaperonin OS=Cyanothece sp. (strain PCC 88... [more]
CH10_NOSP72.699e-1348.1010 kDa chaperonin OS=Nostoc punctiforme (strain AT... [more]
CH10_CYAP44.604e-1350.6310 kDa chaperonin OS=Cyanothece sp. (strain PCC 74... [more]
CH10_THETN6.013e-1348.8110 kDa chaperonin OS=Thermoanaerobacter tengcongen... [more]
CH10_SYNY36.013e-1344.6810 kDa chaperonin OS=Synechocystis sp. (strain PCC... [more]
CH10_THEVL1.340e-1244.6810 kDa chaperonin OS=Thermosynechococcus vulcanus ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11AF08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263224 ID=DY263224; Name=DY263224; organism=Citrus clementina; type=EST; length=1301bp
CAAATTTCAACTAGAAACCTTATCAAACTACTCGCTCGCTTCTCGCTTAT
CATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATCTGCAAGGTACAGT
TTCTTTTCCATGGGTTATTTTATTTTTAAATGACTGAAAAGTCAACTCTG
AGACTGTGCAGTGTGTTGAATTGAAACGAACAGCAGATGGCGACAGCTCA
GCTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCG
ATGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCC
AGCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGC
TCCCAAGGTAATTTTATCCTTTAATAAAAGCAGCATTGATAATTCTAAAA
TTTACTTATTTTTTCGAATGTCTGGCCTCATGTTTTTAGTGCTTGATGAA
ATATGAATTGATGCATTATCGATTTTTCATGAATTTTTGGGAGATGATTT
TTTAATGCATTTTGATTTGTTTTTAACTGAAGGCACTTCCATGACTAATT
TGGCTCTAAAACCCACTGACAAATTGAGTCATTGATAAATTGGTTTGTAT
TTCACTTTAAATGAGTCTTGCATTTGTTTCTTTAGTCTGATAGTGTGCAT
TATATTTTTGTTCTCACTGTGCGTGTTATATTTTCAATTCCGTGTGAATG
TTGCACATCTATCTCTTCTGTTAATGTTAGTAAATGATCAGATTATTTGA
GCTTGTTTGCTTGTCATTCAATTATTTTGATTTTATGGCTGTGCAGTACA
CTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTA
GAGGAAAAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAA
GCCTCAGGCAAGTGAGGTGGTAGCTGTTGGGCGAGGGGAAGACAGTTGGA
AGAACTAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCC
AAGTATGCAGGGAACTGATTTGGATTCAATGGCCCAAAACATCCTAAATT
GAAGGAAGGATAACTAAATTGGCTTTCTTGAAAAAAAATAAAATCAAGGA
TTTTAACCCCTTTATGAAAAAAATTTCCTCAAGGTTGGTGAAAGCTGAAA
AAAAAAAGGGGCGGGGAGGTTTGTTTTGTGGACGGAGGAGAAGAAAGGGA
AAAAAACCTTTTCTTTTGGGAAAAGGGGTCTTTTGGTGTGTGGTGAAAGC
CCGGGGCCCCCTCTTCAAAAGATAAGAAAAGAAAGGGATAAAAAAAAAGA
A
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