DY263224

Overview
NameDY263224
Unique NameDY263224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_THEEB (10 kDa chaperonin OS=Thermosynechococcus elongatus (strain BP-1) GN=groS PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.340e-12
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRG---EDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +++  +++KPLGDR+ VK+   EE+T GGI LP  A+ KPQ  EV AVG G   ED  +  +D  VK G +V+YSKYAG      G  +  L E
Sbjct:    4 VSLSVSTVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMD--VKVGDKVLYSKYAGTEVKLAGEDYVLLSE 95          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_PROMT (10 kDa chaperonin OS=Prochlorococcus marinus (strain NATL2A) GN=groS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.340e-12
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVG---RGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +++  +++KPLGDRV VK+   EEKT GGI LP TA+ KPQ  EV  VG   R ED  +   ++SV  G +V+YSKYAG        ++  L E
Sbjct:    4 VSLSVSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQSPEVSV--GDKVLYSKYAGTDIKLGSDEYVLLSE 95          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_PROM1 (10 kDa chaperonin OS=Prochlorococcus marinus (strain NATL1A) GN=groS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.340e-12
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVG---RGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +++  +++KPLGDRV VK+   EEKT GGI LP TA+ KPQ  EV  VG   R ED  +   ++SV  G +V+YSKYAG        ++  L E
Sbjct:    4 VSLSVSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQSPEVSV--GDKVLYSKYAGTDIKLGSDEYVLLSE 95          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_NATTJ (10 kDa chaperonin OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=groS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.340e-12
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  803 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRG---EDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKH 1042
            ++KPLGDR+++KI   EEKT+ GI LP  A+ KPQ  EVVAVG G   +D  K  ++  VK G +V+YSK+AGN    +G ++
Sbjct:    2 NLKPLGDRIVIKILEAEEKTESGIVLPEKAKEKPQEGEVVAVGSGKTLDDGSK--VEPEVKAGDKVVYSKFAGNEVEVDGEEY 82          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_EXISA (10 kDa chaperonin OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=groS PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.340e-12
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 2
Query:  806 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRGE--DSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +KPLGDRV++++   EEKT GGI LP TA+ KPQ  +VVAVG G   D  K  +D+ VK    VIYSKYAG     +G ++  ++E
Sbjct:    2 LKPLGDRVIIEVVEKEEKTIGGIVLPDTAKEKPQQGKVVAVGTGRVTDEGKR-IDLDVKENDLVIYSKYAGTEVKHDGKEYLIVRE 86          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_TRIEI (10 kDa chaperonin OS=Trichodesmium erythraeum (strain IMS101) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.749e-12
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVG---RGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            + +  +++KPLG+RV VK+   EEKT GGI LP +A+ KPQ  EVV+ G   R +D  +   ++ VK G +V+YSKYAG      G ++  L E
Sbjct:    4 VTLSVSTVKPLGERVFVKVSESEEKTAGGILLPDSAKEKPQVGEVVSAGPGKRNDDGTR--AEMEVKVGDKVLYSKYAGTDIKLGGDEYVLLAE 95          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_SYNPW (10 kDa chaperonin OS=Synechococcus sp. (strain WH7803) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.749e-12
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRG---EDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +++  +++KPLGDRV VK+   EEKT GGI LP TA+ KPQ  EVV VG G   ED  +   ++ V  G +V+YSKYAG        ++  L E
Sbjct:    4 VSLSVSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKANEDGSRQAPEVGV--GDKVLYSKYAGTDIKLGSDEYVLLSE 95          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_RHOMR (10 kDa chaperonin OS=Rhodothermus marinus GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.749e-12
Identity = 36/84 (42.86%), Postives = 55/84 (65.48%), Query Frame = 2
Query:  806 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            IKPL DRV++K +  EEKT+ G+++P TA+ KPQ   V+AVG G       +++SVK G +V+Y KYAG     +G ++  ++E
Sbjct:    6 IKPLSDRVVIKPEPPEEKTESGLYIPDTAKEKPQRGTVIAVGPGRVENGTKIEMSVKEGDKVLYGKYAGTEITIDGEEYLIMRE 89          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_SYNS9 (10 kDa chaperonin OS=Synechococcus sp. (strain CC9902) GN=groS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.285e-12
Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRG---EDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +++  +++KPLGDRV VK+   EEKT GGI LP TA+ KPQ  EVV VG G   ED  +   ++ +  G +V+YSKYAG        ++  L E
Sbjct:    4 VSLSVSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKPNEDGSRQAPEVGI--GDKVLYSKYAGTDIKLGSDEYVLLSE 95          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_SYNPX (10 kDa chaperonin OS=Synechococcus sp. (strain WH8102) GN=groS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.285e-12
Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVG---RGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +++  +++KPLGDRV +K+   EEKT GGI LP TA+ KPQ  EVV VG   R +D  +   ++ V  G +V+YSKYAG      G +   L E
Sbjct:    4 VSLSVSTVKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGV--GDKVLYSKYAGTDIKLGGDEFVLLTE 95          
The following BLAST results are available for this feature:
BLAST of DY263224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CH10_THEEB1.340e-1244.6810 kDa chaperonin OS=Thermosynechococcus elongatus... [more]
CH10_PROMT1.340e-1244.6810 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_PROM11.340e-1244.6810 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_NATTJ1.340e-1248.1910 kDa chaperonin OS=Natranaerobius thermophilus (... [more]
CH10_EXISA1.340e-1248.8410 kDa chaperonin OS=Exiguobacterium sp. (strain A... [more]
CH10_TRIEI1.749e-1242.5510 kDa chaperonin OS=Trichodesmium erythraeum (str... [more]
CH10_SYNPW1.749e-1244.6810 kDa chaperonin OS=Synechococcus sp. (strain WH7... [more]
CH10_RHOMR1.749e-1242.8610 kDa chaperonin OS=Rhodothermus marinus GN=groS ... [more]
CH10_SYNS92.285e-1243.6210 kDa chaperonin OS=Synechococcus sp. (strain CC9... [more]
CH10_SYNPX2.285e-1243.6210 kDa chaperonin OS=Synechococcus sp. (strain WH8... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11AF08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263224 ID=DY263224; Name=DY263224; organism=Citrus clementina; type=EST; length=1301bp
CAAATTTCAACTAGAAACCTTATCAAACTACTCGCTCGCTTCTCGCTTAT
CATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATCTGCAAGGTACAGT
TTCTTTTCCATGGGTTATTTTATTTTTAAATGACTGAAAAGTCAACTCTG
AGACTGTGCAGTGTGTTGAATTGAAACGAACAGCAGATGGCGACAGCTCA
GCTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCG
ATGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCC
AGCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGC
TCCCAAGGTAATTTTATCCTTTAATAAAAGCAGCATTGATAATTCTAAAA
TTTACTTATTTTTTCGAATGTCTGGCCTCATGTTTTTAGTGCTTGATGAA
ATATGAATTGATGCATTATCGATTTTTCATGAATTTTTGGGAGATGATTT
TTTAATGCATTTTGATTTGTTTTTAACTGAAGGCACTTCCATGACTAATT
TGGCTCTAAAACCCACTGACAAATTGAGTCATTGATAAATTGGTTTGTAT
TTCACTTTAAATGAGTCTTGCATTTGTTTCTTTAGTCTGATAGTGTGCAT
TATATTTTTGTTCTCACTGTGCGTGTTATATTTTCAATTCCGTGTGAATG
TTGCACATCTATCTCTTCTGTTAATGTTAGTAAATGATCAGATTATTTGA
GCTTGTTTGCTTGTCATTCAATTATTTTGATTTTATGGCTGTGCAGTACA
CTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTA
GAGGAAAAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAA
GCCTCAGGCAAGTGAGGTGGTAGCTGTTGGGCGAGGGGAAGACAGTTGGA
AGAACTAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCC
AAGTATGCAGGGAACTGATTTGGATTCAATGGCCCAAAACATCCTAAATT
GAAGGAAGGATAACTAAATTGGCTTTCTTGAAAAAAAATAAAATCAAGGA
TTTTAACCCCTTTATGAAAAAAATTTCCTCAAGGTTGGTGAAAGCTGAAA
AAAAAAAGGGGCGGGGAGGTTTGTTTTGTGGACGGAGGAGAAGAAAGGGA
AAAAAACCTTTTCTTTTGGGAAAAGGGGTCTTTTGGTGTGTGGTGAAAGC
CCGGGGCCCCCTCTTCAAAAGATAAGAAAAGAAAGGGATAAAAAAAAAGA
A
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