DY263224

Overview
NameDY263224
Unique NameDY263224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_PROMS (10 kDa chaperonin OS=Prochlorococcus marinus (strain AS9601) GN=groS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.285e-12
Identity = 39/94 (41.49%), Postives = 58/94 (61.70%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRG---EDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +++  +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ  EV  VG G   ED  +   ++S+  G +V+YSKYAG      G ++  L E
Sbjct:    4 VSLTVSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNEDGSRQTPEVSI--GDKVLYSKYAGTDIKLGGDEYVLLSE 95          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_SYNSC (10 kDa chaperonin OS=Synechococcus sp. (strain CC9605) GN=groS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.897e-12
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVG---RGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +++  +++KPLGDRV VK+   EEKT GGI LP TA+ KPQ  EVV VG   R +D  +   ++ V  G  V+YSKYAG        ++  L E
Sbjct:    4 VSLSVSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGV--GDNVLYSKYAGTDIKLGSDEYVLLSE 95          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_SYNS3 (10 kDa chaperonin OS=Synechococcus sp. (strain CC9311) GN=groS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.897e-12
Identity = 41/94 (43.62%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRG---EDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +++  +++KPLGDRV VKI   EEKT GGI LP TA+ KPQ  EVV VG G   +D  +   ++ +  G +V+YSKYAG        ++  L E
Sbjct:    4 VSLSVSTVKPLGDRVFVKISESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKSNDDGSRQAPEVGI--GDKVLYSKYAGTDIKLGSDEYVLLSE 95          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_PROMM (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9313) GN=groS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.897e-12
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVG---RGEDSWKN*LDISVKPGTQVIYSKYAG 1012
            +++  +++KPLGDRV VK+   EEKT GGI LP TA+ KPQ  EVV VG   R +D  +   ++ V  G +V+YSKYAG
Sbjct:    4 VSLSVSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVVQVGPGKRNDDGSRQAPEVGV--GDKVLYSKYAG 80          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_PROM4 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9211) GN=groS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.897e-12
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVG---RGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +++  +++KPLGDRV VK+   EEKT GGI LP TA+ KPQ  EV  VG   R ED  +   ++ V  G +V+YSKYAG        ++  L E
Sbjct:    4 VSLSVSTVKPLGDRVFVKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNEDGSRQAPEVGV--GDKVLYSKYAGTDIKLGSDEYVLLSE 95          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_CLOCE (10 kDa chaperonin OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=groS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.897e-12
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 2
Query:  806 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKEG 1060
            IKPLGDRV++K+   EE T  GI LP +A+ KPQ +E+VAVG G       + + VK G +V+ SKY+G    F+G ++  LK+G
Sbjct:    3 IKPLGDRVVIKMLESEETTKSGIVLPGSAKEKPQVAEIVAVGPGTVVDGKEVKMEVKVGDRVLTSKYSGTEVKFDGQEYTILKQG 87          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_PROM9 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9312) GN=groS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.090e-12
Identity = 38/94 (40.43%), Postives = 58/94 (61.70%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRG---EDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +++  +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ  EV  VG G   +D  +   ++S+  G +V+YSKYAG      G ++  L E
Sbjct:    4 VSLTVSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSI--GDKVLYSKYAGTDIKLGGDEYVLLSE 95          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_PROM2 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9215) GN=groS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.090e-12
Identity = 38/94 (40.43%), Postives = 58/94 (61.70%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRG---EDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +++  +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ  EV  VG G   +D  +   ++S+  G +V+YSKYAG      G ++  L E
Sbjct:    4 VSLTVSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSI--GDKVLYSKYAGTDIKLGGDEYVLLSE 95          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_PROM0 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9301) GN=groS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.090e-12
Identity = 38/94 (40.43%), Postives = 58/94 (61.70%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRG---EDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +++  +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ  EV  VG G   +D  +   ++S+  G +V+YSKYAG      G ++  L E
Sbjct:    4 VSLTVSTVKPLGDRIFIKVSASEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSI--GDKVLYSKYAGTDIKLGGDEYVLLSE 95          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_CLOTH (10 kDa chaperonin OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=groS PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.090e-12
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 2
Query:  803 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +I+PLGDRV+VK+   EE T  GI LP +A+ KPQ +EVVAVG G       + + VK G +VI SKYAG    F+G ++  L++
Sbjct:    2 NIRPLGDRVVVKMVETEETTKSGIVLPGSAKEKPQVAEVVAVGPGTVVDGKEVKMEVKVGDKVIISKYAGTEVKFDGQEYTILRQ 86          
The following BLAST results are available for this feature:
BLAST of DY263224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CH10_PROMS2.285e-1241.4910 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_SYNSC3.897e-1243.6210 kDa chaperonin OS=Synechococcus sp. (strain CC9... [more]
CH10_SYNS33.897e-1243.6210 kDa chaperonin OS=Synechococcus sp. (strain CC9... [more]
CH10_PROMM3.897e-1249.3710 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_PROM43.897e-1243.6210 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_CLOCE3.897e-1245.8810 kDa chaperonin OS=Clostridium cellulolyticum (s... [more]
CH10_PROM95.090e-1240.4310 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_PROM25.090e-1240.4310 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_PROM05.090e-1240.4310 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_CLOTH5.090e-1247.0610 kDa chaperonin OS=Clostridium thermocellum (str... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11AF08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263224 ID=DY263224; Name=DY263224; organism=Citrus clementina; type=EST; length=1301bp
CAAATTTCAACTAGAAACCTTATCAAACTACTCGCTCGCTTCTCGCTTAT
CATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATCTGCAAGGTACAGT
TTCTTTTCCATGGGTTATTTTATTTTTAAATGACTGAAAAGTCAACTCTG
AGACTGTGCAGTGTGTTGAATTGAAACGAACAGCAGATGGCGACAGCTCA
GCTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCG
ATGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCC
AGCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGC
TCCCAAGGTAATTTTATCCTTTAATAAAAGCAGCATTGATAATTCTAAAA
TTTACTTATTTTTTCGAATGTCTGGCCTCATGTTTTTAGTGCTTGATGAA
ATATGAATTGATGCATTATCGATTTTTCATGAATTTTTGGGAGATGATTT
TTTAATGCATTTTGATTTGTTTTTAACTGAAGGCACTTCCATGACTAATT
TGGCTCTAAAACCCACTGACAAATTGAGTCATTGATAAATTGGTTTGTAT
TTCACTTTAAATGAGTCTTGCATTTGTTTCTTTAGTCTGATAGTGTGCAT
TATATTTTTGTTCTCACTGTGCGTGTTATATTTTCAATTCCGTGTGAATG
TTGCACATCTATCTCTTCTGTTAATGTTAGTAAATGATCAGATTATTTGA
GCTTGTTTGCTTGTCATTCAATTATTTTGATTTTATGGCTGTGCAGTACA
CTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTA
GAGGAAAAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAA
GCCTCAGGCAAGTGAGGTGGTAGCTGTTGGGCGAGGGGAAGACAGTTGGA
AGAACTAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCC
AAGTATGCAGGGAACTGATTTGGATTCAATGGCCCAAAACATCCTAAATT
GAAGGAAGGATAACTAAATTGGCTTTCTTGAAAAAAAATAAAATCAAGGA
TTTTAACCCCTTTATGAAAAAAATTTCCTCAAGGTTGGTGAAAGCTGAAA
AAAAAAAGGGGCGGGGAGGTTTGTTTTGTGGACGGAGGAGAAGAAAGGGA
AAAAAACCTTTTCTTTTGGGAAAAGGGGTCTTTTGGTGTGTGGTGAAAGC
CCGGGGCCCCCTCTTCAAAAGATAAGAAAAGAAAGGGATAAAAAAAAAGA
A
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