DY263224

Overview
NameDY263224
Unique NameDY263224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_PROMP (10 kDa chaperonin OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=groS PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.648e-12
Identity = 38/94 (40.43%), Postives = 58/94 (61.70%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRG---EDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +++  +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ  EV  VG G   +D  +   ++S+  G +V+YSKYAG      G ++  L E
Sbjct:    4 VSLTVSTVKPLGDRIFIKVSESEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSI--GDKVLYSKYAGTDIKLGGDEYVLLSE 95          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_PROM5 (10 kDa chaperonin OS=Prochlorococcus marinus (strain MIT 9515) GN=groS PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.648e-12
Identity = 38/94 (40.43%), Postives = 58/94 (61.70%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRG---EDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +++  +++KPLGDR+ +K+   EEKT GGI LP +A+ KPQ  EV  VG G   +D  +   ++S+  G +V+YSKYAG      G ++  L E
Sbjct:    4 VSLTVSTVKPLGDRIFIKVSESEEKTAGGILLPDSAKEKPQVGEVAQVGPGKLNDDGSRQTPEVSI--GDKVLYSKYAGTDIKLGGDEYVLLSE 95          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_CLOB8 (10 kDa chaperonin OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=groS PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.648e-12
Identity = 40/85 (47.06%), Postives = 55/85 (64.71%), Query Frame = 2
Query:  803 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +IKPLG+RV++K    EEKT  GI L  TA+ +PQ +EVVAVG G     N + + VK G +V+YSKYAG     +G ++  LK+
Sbjct:    2 NIKPLGERVVIKKLEAEEKTKSGIVLTGTAKERPQEAEVVAVGPGAVVDGNRVAMEVKVGDKVLYSKYAGTEVKVDGEEYTILKQ 86          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_DESVM (10 kDa chaperonin OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=groS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.682e-12
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 2
Query:  803 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRGEDSWKN*L-DISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            ++KPL DRVLVK    EEKT GG+F+P TA+ KP   EVVA G G+ +    L  ++VK G  V++SKYAG     +G +H  ++E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLFIPDTAKEKPSRGEVVAAGPGKVAEDGKLIAMTVKKGDTVLFSKYAGTEIKLDGVEHLVMRE 87          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_PROMA (10 kDa chaperonin OS=Prochlorococcus marinus GN=groS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.134e-11
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVG---RGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            +++  +++KPLGDRV +K+   EEKT GGI LP TA+ KPQ  EV  VG   R +D  +   ++ V  G +V+YSKYAG        ++  L E
Sbjct:    4 VSLSVSTVKPLGDRVFIKVSESEEKTAGGILLPDTAKEKPQVGEVAQVGPGKRNDDGSRQAPEVGV--GDKVLYSKYAGTDIKLGSDEYVLLSE 95          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_PELPB (10 kDa chaperonin OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=groS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.134e-11
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = 2
Query:  803 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRGEDSWK-N*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            ++KPL DRV+VK    EEKT GG+++P T + KPQ  EVVAVG G+ +     L++ VK G++V+Y KY+G      G  +  ++E
Sbjct:    2 NLKPLSDRVIVKPAAAEEKTKGGLYIPDTGKEKPQYGEVVAVGAGKIADNGQLLEMQVKVGSKVLYGKYSGTEVSVEGEDYLIMRE 87          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_LAWIP (10 kDa chaperonin OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=groS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.134e-11
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 2
Query:  803 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRGE--DSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            ++KPL DRVLVK    EEKT GG+++P TA+ KP   EVVAVG G+  D  K  + ++VK G  V+++KYAG     +G +H  ++E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKL-IPMAVKAGDTVLFNKYAGTEVKLDGVEHLVMRE 87          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_LAWIN (10 kDa chaperonin OS=Lawsonia intracellularis GN=groS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.134e-11
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 2
Query:  803 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRGE--DSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            ++KPL DRVLVK    EEKT GG+++P TA+ KP   EVVAVG G+  D  K  + ++VK G  V+++KYAG     +G +H  ++E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAVGPGKHTDDGKL-IPMAVKAGDTVLFNKYAGTEVKLDGVEHLVMRE 87          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_CLOBO (10 kDa chaperonin OS=Clostridium botulinum GN=groS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.134e-11
Identity = 38/84 (45.24%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  806 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            IKPLGDRV++K    EEKT  GI LP +A+ KPQ +E+VAVG G       +++ VK G +V++S+YAGN    +G ++  L++
Sbjct:    3 IKPLGDRVVIKRLEAEEKTKSGIVLPGSAKEKPQEAEIVAVGPGGLVDGKEVNMEVKVGDRVLFSQYAGNEVKIDGEEYIILRQ 86          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_RUBXD (10 kDa chaperonin OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.481e-11
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  809 KPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNG 1033
            KPLG+R LVK+   EEKT  GI LP TA+ KPQ +EV+AVG  E       DI VK G  V+++KY+G     NG
Sbjct:    4 KPLGERALVKLVEREEKTASGIVLPDTAKEKPQTAEVIAVGDSE-------DIKVKEGDVVVFAKYSGTEISLNG 71          
The following BLAST results are available for this feature:
BLAST of DY263224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CH10_PROMP6.648e-1240.4310 kDa chaperonin OS=Prochlorococcus marinus subsp... [more]
CH10_PROM56.648e-1240.4310 kDa chaperonin OS=Prochlorococcus marinus (stra... [more]
CH10_CLOB86.648e-1247.0610 kDa chaperonin OS=Clostridium beijerinckii (str... [more]
CH10_DESVM8.682e-1246.5110 kDa chaperonin OS=Desulfovibrio vulgaris (strai... [more]
CH10_PROMA1.134e-1141.4910 kDa chaperonin OS=Prochlorococcus marinus GN=gr... [more]
CH10_PELPB1.134e-1143.0210 kDa chaperonin OS=Pelodictyon phaeoclathratifor... [more]
CH10_LAWIP1.134e-1145.9810 kDa chaperonin OS=Lawsonia intracellularis (str... [more]
CH10_LAWIN1.134e-1145.9810 kDa chaperonin OS=Lawsonia intracellularis GN=g... [more]
CH10_CLOBO1.134e-1145.2410 kDa chaperonin OS=Clostridium botulinum GN=groS... [more]
CH10_RUBXD1.481e-1150.6710 kDa chaperonin OS=Rubrobacter xylanophilus (str... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11AF08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263224 ID=DY263224; Name=DY263224; organism=Citrus clementina; type=EST; length=1301bp
CAAATTTCAACTAGAAACCTTATCAAACTACTCGCTCGCTTCTCGCTTAT
CATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATCTGCAAGGTACAGT
TTCTTTTCCATGGGTTATTTTATTTTTAAATGACTGAAAAGTCAACTCTG
AGACTGTGCAGTGTGTTGAATTGAAACGAACAGCAGATGGCGACAGCTCA
GCTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCG
ATGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCC
AGCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGC
TCCCAAGGTAATTTTATCCTTTAATAAAAGCAGCATTGATAATTCTAAAA
TTTACTTATTTTTTCGAATGTCTGGCCTCATGTTTTTAGTGCTTGATGAA
ATATGAATTGATGCATTATCGATTTTTCATGAATTTTTGGGAGATGATTT
TTTAATGCATTTTGATTTGTTTTTAACTGAAGGCACTTCCATGACTAATT
TGGCTCTAAAACCCACTGACAAATTGAGTCATTGATAAATTGGTTTGTAT
TTCACTTTAAATGAGTCTTGCATTTGTTTCTTTAGTCTGATAGTGTGCAT
TATATTTTTGTTCTCACTGTGCGTGTTATATTTTCAATTCCGTGTGAATG
TTGCACATCTATCTCTTCTGTTAATGTTAGTAAATGATCAGATTATTTGA
GCTTGTTTGCTTGTCATTCAATTATTTTGATTTTATGGCTGTGCAGTACA
CTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTA
GAGGAAAAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAA
GCCTCAGGCAAGTGAGGTGGTAGCTGTTGGGCGAGGGGAAGACAGTTGGA
AGAACTAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCC
AAGTATGCAGGGAACTGATTTGGATTCAATGGCCCAAAACATCCTAAATT
GAAGGAAGGATAACTAAATTGGCTTTCTTGAAAAAAAATAAAATCAAGGA
TTTTAACCCCTTTATGAAAAAAATTTCCTCAAGGTTGGTGAAAGCTGAAA
AAAAAAAGGGGCGGGGAGGTTTGTTTTGTGGACGGAGGAGAAGAAAGGGA
AAAAAACCTTTTCTTTTGGGAAAAGGGGTCTTTTGGTGTGTGGTGAAAGC
CCGGGGCCCCCTCTTCAAAAGATAAGAAAAGAAAGGGATAAAAAAAAAGA
A
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