DY263224

Overview
NameDY263224
Unique NameDY263224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1301
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_CLOPS (10 kDa chaperonin OS=Clostridium perfringens (strain SM101 / Type A) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.481e-11
Identity = 39/85 (45.88%), Postives = 53/85 (62.35%), Query Frame = 2
Query:  803 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            SIKPLGDRV++K    EE T  GI +  TA+ +PQ +EVVAVG G        ++ VK G +V+YSKYAG    F G ++  L++
Sbjct:    2 SIKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAIIDGKRTEMEVKIGDKVLYSKYAGTEVKFEGEEYTILRQ 86          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_CLOPE (10 kDa chaperonin OS=Clostridium perfringens GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.481e-11
Identity = 39/85 (45.88%), Postives = 53/85 (62.35%), Query Frame = 2
Query:  803 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            SIKPLGDRV++K    EE T  GI +  TA+ +PQ +EVVAVG G        ++ VK G +V+YSKYAG    F G ++  L++
Sbjct:    2 SIKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAIVDGKRTEMEVKIGDKVLYSKYAGTEVKFEGEEYTILRQ 86          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_CLOP1 (10 kDa chaperonin OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.481e-11
Identity = 39/85 (45.88%), Postives = 53/85 (62.35%), Query Frame = 2
Query:  803 SIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRGEDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            SIKPLGDRV++K    EE T  GI +  TA+ +PQ +EVVAVG G        ++ VK G +V+YSKYAG    F G ++  L++
Sbjct:    2 SIKPLGDRVVIKRLEAEETTKSGIIVTGTAKERPQEAEVVAVGPGAIVDGKRTEMEVKIGDKVLYSKYAGTEVKFEGEEYTILRQ 86          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_BACTR (10 kDa chaperonin OS=Bacillus thermoglucosidasius GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.481e-11
Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 2
Query:  806 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRGE--DSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            IKPLGDRV+++I   EEKT  GI LP TA+ KPQ  +VVAVG+G   D+ +  +   V+ G ++I+SKYAG    ++G ++  L+E
Sbjct:    2 IKPLGDRVVIEIVETEEKTASGIVLPDTAKEKPQEGKVVAVGKGRVLDNGQR-VAPEVEVGDRIIFSKYAGTEVKYDGKEYLILRE 86          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_LACRJ (10 kDa chaperonin OS=Lactobacillus reuteri (strain JCM 1112) GN=groS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.934e-11
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 2
Query:  806 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRG---EDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPK 1039
            +KPLGDRV++K +T EEKT GGI L S  + KP   +V+AVG G   E+  K  L  +VK G +V++ KYAGN   +NG K
Sbjct:    2 LKPLGDRVVLKAETEEEKTVGGIVLASNVKEKPTTGKVIAVGEGRTLENGQK--LAPAVKEGDRVLFDKYAGNEVEYNGEK 80          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_LACRD (10 kDa chaperonin OS=Lactobacillus reuteri (strain DSM 20016) GN=groS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.934e-11
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 2
Query:  806 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRG---EDSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPK 1039
            +KPLGDRV++K +T EEKT GGI L S  + KP   +V+AVG G   E+  K  L  +VK G +V++ KYAGN   +NG K
Sbjct:    2 LKPLGDRVVLKAETEEEKTVGGIVLASNVKEKPTTGKVIAVGEGRTLENGQK--LAPAVKEGDRVLFDKYAGNEVEYNGEK 80          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_LACAC (10 kDa chaperonin OS=Lactobacillus acidophilus GN=groS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.934e-11
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 2
Query:  806 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRGE-DSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            ++P+GDRV+VK+K  EEKT GGI L S A+ KP   EVVAVG G   S  + L + VK G  V+Y KY+G    + G K+  L E
Sbjct:    2 LQPIGDRVIVKVKEEEEKTVGGIVLASNAKQKPTEGEVVAVGEGAYTSNGDKLPMVVKKGDVVLYDKYSGTNVEYEGEKYLVLHE 86          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_SYNP6 (10 kDa chaperonin OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.526e-11
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVG---RGEDSWKN*LDISVKPGTQVIYSKYAG 1012
            +++  +++ PLGDRV VK+   EEKT GGI LP  A+ KPQ  E+VAVG   R +D  +      VK G +V+YSKYAG
Sbjct:    4 VSLSVSTVTPLGDRVFVKVAEAEEKTAGGIILPDNAKEKPQVGEIVAVGPGKRNDDGSRQ--APEVKIGDKVLYSKYAG 80          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_SYNE7 (10 kDa chaperonin OS=Synechococcus elongatus (strain PCC 7942) GN=groS PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.526e-11
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 2
Query:  785 MAVQYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVG---RGEDSWKN*LDISVKPGTQVIYSKYAG 1012
            +++  +++ PLGDRV VK+   EEKT GGI LP  A+ KPQ  E+VAVG   R +D  +      VK G +V+YSKYAG
Sbjct:    4 VSLSVSTVTPLGDRVFVKVAEAEEKTAGGIILPDNAKEKPQVGEIVAVGPGKRNDDGSRQ--APEVKIGDKVLYSKYAG 80          
BLAST of DY263224 vs. ExPASy Swiss-Prot
Match: CH10_LACHE (10 kDa chaperonin OS=Lactobacillus helveticus GN=groS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.526e-11
Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 2
Query:  806 IKPLGDRVLVKIKTVEEKTDGGIFLPSTAQTKPQASEVVAVGRGE-DSWKN*LDISVKPGTQVIYSKYAGN*FGFNGPKHPKLKE 1057
            ++P+GDRV+VK+K  EEKT GGI L S A+ KP   EVVAVG G   S    + +SVK G  V+Y +Y+G    + G K+  L E
Sbjct:    2 LQPIGDRVIVKVKDEEEKTVGGIVLASNAKKKPTEGEVVAVGEGAYASNGEKIPMSVKKGDVVLYDRYSGTNVEYEGEKYLVLHE 86          
The following BLAST results are available for this feature:
BLAST of DY263224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CH10_CLOPS1.481e-1145.8810 kDa chaperonin OS=Clostridium perfringens (stra... [more]
CH10_CLOPE1.481e-1145.8810 kDa chaperonin OS=Clostridium perfringens GN=gr... [more]
CH10_CLOP11.481e-1145.8810 kDa chaperonin OS=Clostridium perfringens (stra... [more]
CH10_BACTR1.481e-1146.5110 kDa chaperonin OS=Bacillus thermoglucosidasius ... [more]
CH10_LACRJ1.934e-1149.3810 kDa chaperonin OS=Lactobacillus reuteri (strain... [more]
CH10_LACRD1.934e-1149.3810 kDa chaperonin OS=Lactobacillus reuteri (strain... [more]
CH10_LACAC1.934e-1148.2410 kDa chaperonin OS=Lactobacillus acidophilus GN=... [more]
CH10_SYNP62.526e-1148.1010 kDa chaperonin OS=Synechococcus sp. (strain ATC... [more]
CH10_SYNE72.526e-1148.1010 kDa chaperonin OS=Synechococcus elongatus (stra... [more]
CH10_LACHE2.526e-1147.0610 kDa chaperonin OS=Lactobacillus helveticus GN=g... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11AF08RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263224 ID=DY263224; Name=DY263224; organism=Citrus clementina; type=EST; length=1301bp
CAAATTTCAACTAGAAACCTTATCAAACTACTCGCTCGCTTCTCGCTTAT
CATTTCCAATCAGAATCTCTCTCGCTCTCTCTGCATCTGCAAGGTACAGT
TTCTTTTCCATGGGTTATTTTATTTTTAAATGACTGAAAAGTCAACTCTG
AGACTGTGCAGTGTGTTGAATTGAAACGAACAGCAGATGGCGACAGCTCA
GCTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCG
ATGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTCCC
AGCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGC
TCCCAAGGTAATTTTATCCTTTAATAAAAGCAGCATTGATAATTCTAAAA
TTTACTTATTTTTTCGAATGTCTGGCCTCATGTTTTTAGTGCTTGATGAA
ATATGAATTGATGCATTATCGATTTTTCATGAATTTTTGGGAGATGATTT
TTTAATGCATTTTGATTTGTTTTTAACTGAAGGCACTTCCATGACTAATT
TGGCTCTAAAACCCACTGACAAATTGAGTCATTGATAAATTGGTTTGTAT
TTCACTTTAAATGAGTCTTGCATTTGTTTCTTTAGTCTGATAGTGTGCAT
TATATTTTTGTTCTCACTGTGCGTGTTATATTTTCAATTCCGTGTGAATG
TTGCACATCTATCTCTTCTGTTAATGTTAGTAAATGATCAGATTATTTGA
GCTTGTTTGCTTGTCATTCAATTATTTTGATTTTATGGCTGTGCAGTACA
CTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTA
GAGGAAAAAACTGATGGTGGTATTTTTCTGCCATCTACAGCTCAAACAAA
GCCTCAGGCAAGTGAGGTGGTAGCTGTTGGGCGAGGGGAAGACAGTTGGA
AGAACTAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCC
AAGTATGCAGGGAACTGATTTGGATTCAATGGCCCAAAACATCCTAAATT
GAAGGAAGGATAACTAAATTGGCTTTCTTGAAAAAAAATAAAATCAAGGA
TTTTAACCCCTTTATGAAAAAAATTTCCTCAAGGTTGGTGAAAGCTGAAA
AAAAAAAGGGGCGGGGAGGTTTGTTTTGTGGACGGAGGAGAAGAAAGGGA
AAAAAACCTTTTCTTTTGGGAAAAGGGGTCTTTTGGTGTGTGGTGAAAGC
CCGGGGCCCCCTCTTCAAAAGATAAGAAAAGAAAGGGATAAAAAAAAAGA
A
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