DY263229

Overview
NameDY263229
Unique NameDY263229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1224
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263229 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 2.827e-41
Identity = 89/203 (43.84%), Postives = 125/203 (61.58%), Query Frame = 2
Query:  416 PRVQISGNFAPV-PEWPVRHGLPVTGSIPECINGVYLRNGANPLFEPVAGHHFFDGDGMVHAVTIGNGSASYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRLLAMSEDDLPYQVRITPSGDLETVGRYNFNHQLKSTMIAHPKVDPVSKELFCLNYEVVQKPYL 1021
            P   +SGNFAP+  E P    LPV G +PEC+NG ++R G NP F+ VAG+H+FDGDGM+H V I +G A+Y  R+ +T RL QE   G   F K IG+L G  G+  + +   R    ++D+  G G AN  LVY + +LLA+ E D PY +++   GDL+T+G  +++ +L  +  AHPKVDPV+ E+F   Y     PYL
Sbjct:   44 PLHYLSGNFAPIRDETPPVKDLPVHGFLPECLNGEFVRVGPNPKFDAVAGYHWFDGDGMIHGVRIKDGKATYVSRYVKTSRLKQEEFFGAAKFMK-IGDLKGFFGLLMVNVQQLRTKLKILDNTYGNGTANTALVYHHGKLLALQEADKPYVIKVLEDGDLQTLGIIDYDKRLTHSFTAHPKVDPVTGEMFTFGYSHT-PPYL 244          
BLAST of DY263229 vs. ExPASy Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.188e-39
Identity = 85/195 (43.59%), Postives = 117/195 (60.00%), Query Frame = 2
Query:  416 PRVQISGNFAPVP-EWPVRHGLPVTGSIPECINGVYLRNGANPLFEPVAGHHFFDGDGMVHAVTIGNGSASYACRFTETQRLMQERELGRPVFPKAIGELHGHNGIGRLLLFYARGLFGLVDHKQGTGVANAGLVYFNNRLLAMSEDDLPYQVRITPSGDLETVGRYNFNHQLKSTMIAHPKVDPVSKELFCLNY 997
            P   +SGNFAPV  E P    L V G +P+C+NG ++R G NP F PVAG+H+FDGDGM+H + I +G ASY  RF +T R  QE       F K IG+L G  G+  + +   R    ++D   G G AN  LVY + +LLA+SE D PY +++   GDL+T+G  +++ +L     AHPKVDP + E+F   Y
Sbjct:   44 PHHWLSGNFAPVKDETPPVKDLTVQGHLPDCLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLRIKDGKASYVSRFVKTSRFKQEEYFNGSKFMK-IGDLKGLFGLLMVNMQMLRAKLKILDVSYGHGTANTALVYHHQKLLALSEGDKPYAIKVFEDGDLQTLGMLDYDKRLGHNFTAHPKVDPFTGEMFTFGY 237          
BLAST of DY263229 vs. ExPASy Swiss-Prot
Match: ZCD_CROSA (Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplast OS=Crocus sativus GN=ZCD PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.257e-13
Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = 2
Query:  773 VDHKQGTGVANAGLVYFNNRLLAMSEDDLPYQVRITPS-GDLETVGRYNFNHQLKSTMIAHPKVDPVSKELFCLNYEVVQKPYLKNFKFFC 1042
            VD  +G G+AN  L + N RL A+ E DLPY VR++P  GD+ TVGR   N   KST  AHPK DPV+ E F  +Y  +Q PY+   ++ C
Sbjct:    3 VDPTKGIGLANTSLQFSNGRLHALCEYDLPYVVRLSPEDGDISTVGRIENNVSTKSTT-AHPKTDPVTGETFSFSYGPIQ-PYVTYSRYDC 91          
The following BLAST results are available for this feature:
BLAST of DY263229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CCD1_ARATH2.827e-4143.84Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD1_PEA1.188e-3943.59Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
ZCD_CROSA7.257e-1347.25Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromo... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11AG01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263229 ID=DY263229; Name=DY263229; organism=Citrus clementina; type=EST; length=1224bp
CAAAACTTTCTCCCCAGTCTTGTGCCATATAGCCATGGCTGCTTCTACTA
CATCACCCAACTCTTGTAGTTGGGGTAAATCTCAAATTCTTAACCCATTC
TCTTCATCTTTGGTTGACATGGGCTTCCCAACGAAGTCCATAGCCTTGAA
GAAGAAGCCCAATAAATCCTTGAAAGTAGAATCTGCCTTACACTCTCCTT
CAGTTCTTCATTTCCCTAAACAGCCTTACCAGAATCCTGTAATTACCAGA
CAGGACTCTACAGCAAAACCCGAAAACAAGAGCAACAAAAGCCAAGGACA
AACACAGCAATCACAATGGAATCCCCTCCAAAGAGCCGCTGCCATGGCCT
TGGACATGGCGGAGAACGCGTTGGTCTCACGAGAGCGCCAACACCCACTT
CCCAAAACAGCCGACCCACGTGTCCAAATTAGCGGTAACTTCGCTCCGGT
GCCGGAATGGCCCGTCCGGCATGGTCTCCCAGTCACTGGCTCCATCCCCG
AATGCATCAACGGCGTTTACCTCCGCAACGGTGCCAACCCATTATTCGAG
CCGGTTGCCGGTCACCATTTCTTTGACGGTGACGGCATGGTCCATGCAGT
CACCATCGGAAACGGAAGCGCAAGTTACGCTTGTCGTTTCACAGAGACAC
AGAGATTAATGCAGGAGAGAGAATTAGGGCGTCCTGTTTTTCCAAAAGCA
ATAGGCGAATTACACGGACACAATGGTATTGGGCGTCTCTTGCTTTTCTA
CGCAAGAGGATTGTTCGGACTCGTTGATCATAAACAAGGCACTGGTGTGG
CAAACGCTGGCTTAGTTTACTTCAATAACAGGCTTTTAGCAATGTCCGAA
GATGATCTTCCATACCAAGTACGCATCACTCCTTCTGGGGATCTTGAAAC
CGTTGGGCGTTACAATTTTAACCACCAACTTAAGTCAACAATGATAGCTC
ATCCAAAAGTTGATCCCGTATCAAAGGAACTTTTTTGCTTGAATTATGAG
GTTGTTCAAAAGCCTTATTTAAAAAACTTTAAATTTTTCTGCTGAATGGA
GACAATTCCCCCAACTTAAAAATTTCTCCTGCCAGTGGCCACCCGGAATC
CACGAATTCCCTTATTCCTTGAAAAATTTTGGGGGGGGATCCCGGGAACC
AAAAAAATCCTTTTTTCAAACCCCCCAAAAAAAATAGAATAAGGGGGGGG
GGCCCCCCCCGGGGAGAATTTTTT
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