DY263230

Overview
NameDY263230
Unique NameDY263230
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1231
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY263230 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.023e-11
Identity = 40/129 (31.01%), Postives = 61/129 (47.29%), Query Frame = 1 
Query:  268 DPYGALTSWRSCDTENNPCSWFGVECS-DGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPXXXXXXXXXXXXXXXHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIYKLQVLS 651
            DP+G   +W     +  PCSW  + CS D  V+ L      L GTL+  I +LT+++ + L+NN+ SG IP               +N FSG +P  +    +L  L L+NN   G     + ++  LS
Sbjct:   47 DPHGVFKNWDEFSVD--PCSWTMISCSSDNLVIGLGAPSQSLSGTLSGSIGNLTNLRQVSLQNNNISGKIPPEICSLPKLQTLDLSNNRFSGEIPGSVNQLSNLQYLRLNNNSLSGPFPASLSQIPHLS 173
[Close]
BLAST of DY263230 vs. ExPASy Swiss-Prot
Match: EXS_ARATH (Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.023e-11
Identity = 47/140 (33.57%), Postives = 63/140 (45.00%), Query Frame = 1 
Query:  283 LTSWRSCDTENNPCSWFGVECSDGKVVNLNLKDLCLEGTLAPEIQSLTHIKSIILRNNSFSGIIPXXXXXXXXXXXXXXXHNNFSGPLPNDLGINHSLTILLLDNNDFVGSLSPEIY-KLQVLSESQVDEGQLSSAAKKE 699
            L+SW    + ++ C W GV C  G+V +L+L  L L G +  EI SL +++ + L  N FSG IP                N+ +G LP  L     L  L L +N F GSL P  +  L  LS   V    LS     E
Sbjct:   43 LSSWNVSSSASH-CDWVGVTCLLGRVNSLSLPSLSLRGQIPKEISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPRLLSELPQLLYLDLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPE 181
The following BLAST results are available for this feature:
BLAST of DY263230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
Y2239_ARATH4.023e-1131.01Probable LRR receptor-like serine/threonine-protei... [more]
EXS_ARATH4.023e-1133.57Leucine-rich repeat receptor protein kinase EXS OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA11AG02RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263230 ID=DY263230; Name=DY263230; organism=Citrus clementina; type=EST; length=1231bp
CGAAGATGACTTGAAAACTCAGATATTTCACATTTGTGTTCTCCGTTTCA
ATCTAAATCCTTAATTTTTAAAACTTCAGTTAATTTAAAACTTTAAGTTC
TCCGATCCGACATCGTTTCTCAACTCCGGTGGAAAATGGACCAGAACTGG
AAGTTCACCAGATTAGGAGTTCTGTTCGTAGTTCTAATTTCTCAAAGTTT
GTGCTTGTGTTGGTCTTTAAACGACGAAGGTTTGGCTCTGTTGAGATTGA
GAGAGAGAGTGGTGCGTGATCCATATGGTGCTTTAACGAGTTGGAGAAGT
TGTGATACAGAGAATAATCCGTGTTCTTGGTTCGGCGTTGAGTGCTCTGA
TGGCAAAGTTGTAAATTTGAACTTGAAGGATCTATGCCTTGAAGGAACTC
TGGCTCCGGAGATCCAAAGCCTAACTCACATAAAGTCTATTATTTTACGC
AACAACTCTTTTAGTGGAATCATTCCTGAAGGATTTGGAGAGTTGGAGGA
GTTAGAGGTGTTGGATTTCGGACACAATAACTTTAGTGGACCTCTCCCAA
ATGACCTGGGCATTAATCATTCACTGACAATTCTTTTATTGGACAACAAT
GACTTTGTTGGAAGCCTATCTCCCGAGATATATAAACTTCAGGTGCTTTC
TGAATCCCAAGTGGATGAAGGCCAGCTATCTAGTGCTGCTAAAAAGGAAC
AGTCTTGGTACGAAAGATCGATTAAATGGAATGGTGTCCTTGATGAAGAT
ACTGTTCAAAGGAGACTGCTGCAAATTCATCCTTTCAGAAATCTCAAAGA
CCGTAATTTTGGAAATGCGCGTACCTCTTCTCCACTTCCTTCATCAGATG
CTATTCCACCTACTGCTGTTGCTTCCTCAAACGACACAAAGGGAAATGCA
ACAAGCTCTGATCGTAATGATTCCGTTTCATCTCAAAAACTTTCCATCCA
GCTCCAGCTCCAGCTCCAATCAACTCCAACTCCAACTCCTTCCCCTTTCA
ATTCCAAGGCTTTCCTCTTACAAACCTTCAAAAAACAAGGGGGAATTCTT
CAAAACTATTGGCATTCTGGGCGGAATTCAAAGGGGGCCCCAAACTGGTG
GGAACAATTGTGGGGTAAATTCTCCGGCAAAAACAAAAAGGAATCAATGG
TCAAAACCTGGGGGCCAAGGAATGGAGGGGAAAGCCTTCAAAAAACCTTT
GTAATGGGGGTTTTCAAAACCTTAAAAAAAA
back to top