DY263235

Overview
NameDY263235
Unique NameDY263235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1325
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.081e-33
Identity = 64/91 (70.33%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            +TAALSTALFNNGL CG+CFE++C  D +WC PG+  I++TATNFCPPN A  ++NGGWCNPP  HFDLA P+F ++AQYRAGIVPVSYRR
Sbjct:   60 STAALSTALFNNGLSCGSCFEIRCENDGKWCLPGS--IVVTATNFCPPNNALANNNGGWCNPPLEHFDLAQPVFQRIAQYRAGIVPVSYRR 148          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.412e-33
Identity = 65/91 (71.43%), Postives = 73/91 (80.22%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            NTAALSTALFNNGL CGAC+E+KC  DP+WC      I +TATNFCPPN    +DNGGWCNPP  HFDLA P FL++AQYRAGIVPVS+RR
Sbjct:   64 NTAALSTALFNNGLTCGACYEMKCNDDPRWCL--GSTITVTATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRR 152          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.108e-33
Identity = 62/91 (68.13%), Postives = 74/91 (81.32%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            NTAALSTALFN G  CGACF++KC  DP+WC  G   I +T TNFCPPNFAQ ++ GGWCNPP+ HFDLA P+FL++AQY+AG+VPV YRR
Sbjct:   63 NTAALSTALFNGGQSCGACFQIKCVDDPKWCIGGT--ITVTGTNFCPPNFAQANNAGGWCNPPQHHFDLAQPIFLRIAQYKAGVVPVQYRR 151          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 9.151e-33
Identity = 63/91 (69.23%), Postives = 74/91 (81.32%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            NTAALSTALFN+G  CG+C+EL+C      C PG+  I +TATNFCPPN+  PSD+GGWCNPPRPHFD+A P FL +AQYRAGIVPVS+RR
Sbjct:   58 NTAALSTALFNDGAACGSCYELRCDNAGSSCLPGS--ITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRR 146          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 9.151e-33
Identity = 63/91 (69.23%), Postives = 74/91 (81.32%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            NTAALSTALFN+G  CG+C+EL+C      C PG+  I +TATNFCPPN+  PSD+GGWCNPPRPHFD+A P FL +AQYRAGIVPVS+RR
Sbjct:   58 NTAALSTALFNDGAACGSCYELRCDNAGSSCLPGS--ITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRR 146          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 2.662e-32
Identity = 62/92 (67.39%), Postives = 75/92 (81.52%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKCGGDPQW-CNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            +TAALSTALFN GL CG+C+EL+C GD +  C PG   + +TATNFCPPN+A PSD GGWCNPPR HFDLA P FL++A++ AGIVPVS+RR
Sbjct:   62 STAALSTALFNRGLSCGSCYELRCAGDHRRSCLPGGATVTVTATNFCPPNYALPSDGGGWCNPPRRHFDLAEPAFLRIARHAAGIVPVSFRR 153          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP17_ARATH (Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 3.477e-32
Identity = 62/93 (66.67%), Postives = 74/93 (79.57%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            NTAALSTALFN+G  CG C+++ C     PQWC  G  +I ITATNFCPPNFAQ SDNGGWCNPPRPHFD+A P FL +A+Y+AGIVP+ Y++
Sbjct:   62 NTAALSTALFNDGKSCGGCYQILCDATKVPQWCLKGK-SITITATNFCPPNFAQASDNGGWCNPPRPHFDMAQPAFLTIAKYKAGIVPILYKK 153          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 7.746e-32
Identity = 63/94 (67.02%), Postives = 77/94 (81.91%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKC---GGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            NTAALSTALFNNGL CGACFE++C   GG    C PG+  +++TATNFCPPN A PSD+GGWCNPPR HFD++ P+F ++A ++AGIVPVSYRR
Sbjct:   98 NTAALSTALFNNGLSCGACFEVRCDAGGGGSHSCLPGS--VVVTATNFCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALFKAGIVPVSYRR 189          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 3.845e-31
Identity = 61/90 (67.78%), Postives = 74/90 (82.22%), Query Frame = 3
Query:    6 TAALSTALFNNGLICGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            TAALSTALFNNG  CGAC+E+ C   PQWC PG+  I ITATNFCPP+F +P+DN  WCNPP+ HFDL+ PMFLK+A+Y+AG+VPV +RR
Sbjct:  125 TAALSTALFNNGSRCGACYEIMCEHAPQWCLPGS--IKITATNFCPPDFTKPNDN--WCNPPQKHFDLSQPMFLKIAKYKAGVVPVKFRR 210          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 1.908e-30
Identity = 60/90 (66.67%), Postives = 71/90 (78.89%), Query Frame = 3
Query:    6 TAALSTALFNNGLICGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            TAALST LF +G  CG C+EL+C   P WCNPG+P+++IT TN CPPN+  P+D+GGWCNPPR HFD+A P FLKLAQ  AGIVPV YRR
Sbjct:   89 TAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRR 177          
The following BLAST results are available for this feature:
BLAST of DY263235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXP10_ARATH1.081e-3370.33Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXPA8_ARATH1.412e-3371.43Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXP14_ARATH4.108e-3368.13Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXPA4_ORYSJ9.151e-3369.23Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI9.151e-3369.23Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXPA6_ORYSJ2.662e-3267.39Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP17_ARATH3.477e-3266.67Putative expansin-A17 OS=Arabidopsis thaliana GN=E... [more]
EXPA5_ORYSJ7.746e-3267.02Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP24_ARATH3.845e-3167.78Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP17_ORYSJ1.908e-3066.67Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11AG07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263235 ID=DY263235; Name=DY263235; organism=Citrus clementina; type=EST; length=1325bp
TGAATACGGCGGCTCTCAGTACGGCGCTGTTCAACAACGGCTTGATCTGC
GGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGACCCGCAATGGTGTAACCC
GGGTAACCCGGCCATTCTGATCACGGCGACAAACTTTTGCCCCCCGAACT
TCGCTCAGCCCTCCGATAATGGCGGGTGGTGCAACCCTCCTCGCCCTCAT
TTCGATCTGGCCATGCCTATGTTCCTCAAGCTCGCCCAGTACCGCGCTGG
TATCGTCCCCGTTTCTTACCGCAGGTGAGTGTTGGAGTTACTGTCGATTT
TACTCAAATGCCCCTGCTAAAGTTTACATTTTTATTTAATATGTGTTTTC
TTTTCTTTGTCTCCAAGTTTTGTTTGAATGTCTTCTTTGGAAGAAATACC
GGAAACCCGGGAAAAAGTCGGGCTGTTTAATGTGTGTTTTTATTTTAATA
TTTTCCCTTTTCTTTTCTTCGCAAACAAACAGAACCCGGAAATAAGTTTA
CTGATCAGTAGTTTATGTCGTTTATCCCAACATAGCCAACGGCAAACCGT
TCAGCCCTTGTGCCTTTTTCACCCTTGTACTTTTCGGTGTTGTTTAAATT
ATAATTATTTTTATAACTAAAATATGCTCGCATGTATGTAATTGTTTAAT
TTGTACGAGGACATTGTCGTCAAATAAAATAAGGGTGCTTTAGTAATTTT
ACGTTTCTCAAATATTACCGGAAAATCAGGATTGGGTGGTGGTTCTAAGT
CAGAAAATCTGGGGCACAGTTCACGTTCTCCCACGCGTGTGTCTGTTCAC
AATTTTTTTGGGACCTTGTACCTAATTACTGAAATATTTATTTTTTAATT
TTTTTAACCAGTCAAGGTTTTAGTCTTCAAACGGGGGCCTAAAGTTGCCC
TCAAACCGTAGGGGACTGTTAGGGCAGGTCTTAACTGCGACGTTACCCAT
TTTTTAAATAATTATATTATTTTGTCTTTGCAGGGTGCCCTGCAAAAAGC
AAGGCGAATTCAAATCACATTAAACGGTTTCCGTTCTTTCACTTGGTCCT
GGGTCCCCAACGCCCCGGGGGGCGGGGGAAATTCCGGGCCCTGGACCTTG
AAAGGGGGCCAACCCCAAATGGGCTGAACATGGACCCCCACTGGGGGAAA
AAACGGGGCAACCACACCCCCTCCCTCCGGGGGCCCGGAGCCTTTTTTTT
TTAAAAATCCCGGGGGGAGGGGGCAAAGAAGGAGCCCCTACCCCCCTTTG
GTGAAAGATGGGGCCCCCCGCGGCAAAAATTGGGAGGCGTTTGGGGGGTT
AACACCCCCTTTTTCTGTGTGGGAA
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