DY263235

Overview
NameDY263235
Unique NameDY263235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1325
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.492e-30
Identity = 58/90 (64.44%), Postives = 69/90 (76.67%), Query Frame = 3
Query:    6 TAALSTALFNNGLICGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            T ALSTALFN G  CG CF+LKC   P  C  G+PA ++TATN CPPN+ Q S+NGGWCNPPR HFDL  P F+K+A ++AGI+PVSYRR
Sbjct:   66 TTALSTALFNEGYACGQCFQLKCVSSPN-CYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRR 154          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 3.255e-30
Identity = 58/90 (64.44%), Postives = 73/90 (81.11%), Query Frame = 3
Query:    6 TAALSTALFNNGLICGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            TAALSTALFN G  CGAC+++ C  DPQWC PG+  + ITATNFCPP++++    G WCNPP+ HFDL++PMFLK+AQY+AG+VPV YRR
Sbjct:   83 TAALSTALFNEGYTCGACYQIMCVNDPQWCLPGS--VKITATNFCPPDYSKTE--GVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRR 168          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 5.552e-30
Identity = 59/90 (65.56%), Postives = 72/90 (80.00%), Query Frame = 3
Query:    6 TAALSTALFNNGLICGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            TAALSTALFN G  CGAC+++ C  DPQWC PG   I ITATNFCPP++++    G WCNPP+ HFDL++PMFLK+AQY+AG+VPV YRR
Sbjct:   90 TAALSTALFNEGYTCGACYQIMCVHDPQWCLPGT--IKITATNFCPPDYSKTE--GVWCNPPQKHFDLSLPMFLKIAQYKAGVVPVKYRR 175          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 2.755e-29
Identity = 57/91 (62.64%), Postives = 69/91 (75.82%), Query Frame = 3
Query:    9 AALSTALFNNGLICGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            AALSTALFN+G  CG C+++ C     PQWC PG   + +TATNFCPPN+  PSDNGGWCNPPRPHFD+A P + K+  YRAGI+PV Y+R
Sbjct:   86 AALSTALFNDGASCGQCYKIACDRKRAPQWCKPG-VTVTVTATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVMYQR 175          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 2.755e-29
Identity = 58/91 (63.74%), Postives = 69/91 (75.82%), Query Frame = 3
Query:    9 AALSTALFNNGLICGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            AALSTALFN+G  CG C+++ C     PQWC PG   + ITATNFCPPN+  PSDNGGWCNPPRPHFD+A P + K+  YRAGI+PV Y+R
Sbjct:   88 AALSTALFNDGASCGQCYKIACDRKRAPQWCRPG-VTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQR 177          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 3.598e-29
Identity = 56/92 (60.87%), Postives = 71/92 (77.17%), Query Frame = 3
Query:    6 TAALSTALFNNGLICGACFELKCGG--DPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            TAALSTALF++G  CG C+ L C    DP+WC  G  ++ +TATNFCPPN+A PSD+GGWCNPPRPHFD+A P + ++  YR GIVPV++RR
Sbjct:   69 TAALSTALFDDGASCGQCYALTCDARADPRWCRAG-ASVTVTATNFCPPNYALPSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRR 159          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 6.138e-29
Identity = 60/91 (65.93%), Postives = 69/91 (75.82%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            +TAALSTALFNNG  CGACFE++CGG    C  G  A+  TATN CPPN+A   D GGWCNPPRPHFD+A P F ++AQ RAG+VPV YRR
Sbjct:   61 STAALSTALFNNGQSCGACFEVRCGGGGS-CLAGTVAV--TATNLCPPNYALAGDAGGWCNPPRPHFDMAEPAFTRIAQARAGVVPVQYRR 148          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 8.016e-29
Identity = 57/90 (63.33%), Postives = 73/90 (81.11%), Query Frame = 3
Query:    6 TAALSTALFNNGLICGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            TAALSTALFN+G  CGAC+E+ C  DPQWC PG  ++ ITATNFCP N+++ +D   WCNPP+ HFDL++ MFLK+A+Y+AG+VPV YRR
Sbjct:   93 TAALSTALFNDGYTCGACYEIMCTRDPQWCLPG--SVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRR 178          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 8.016e-29
Identity = 57/90 (63.33%), Postives = 73/90 (81.11%), Query Frame = 3
Query:    6 TAALSTALFNNGLICGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            TAALSTALFN+G  CGAC+E+ C  DPQWC PG  ++ ITATNFCP N+++ +D   WCNPP+ HFDL++ MFLK+A+Y+AG+VPV YRR
Sbjct:   87 TAALSTALFNDGYTCGACYEIMCTRDPQWCLPG--SVKITATNFCPANYSKTTDL--WCNPPQKHFDLSLAMFLKIAKYKAGVVPVRYRR 172          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 8.016e-29
Identity = 58/92 (63.04%), Postives = 70/92 (76.09%), Query Frame = 3
Query:    6 TAALSTALFNNGLICGACFELKCGG--DPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            TAALSTALFN+GL CG C++L C    D  WC PG  ++ ITATNFCPPN+  PSD+GGWCNPPRPHFD+A P + K+  YR GI+PV Y+R
Sbjct:   69 TAALSTALFNDGLACGQCYKLVCDRKTDRTWCKPG-VSVTITATNFCPPNWDLPSDSGGWCNPPRPHFDMAQPAWEKIGIYRGGIIPVIYQR 159          
The following BLAST results are available for this feature:
BLAST of DY263235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXP18_ARATH2.492e-3064.44Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP23_ARATH3.255e-3064.44Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP25_ARATH5.552e-3065.56Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP24_ORYSJ2.755e-2962.64Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ORYSJ2.755e-2963.74Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP29_ORYSJ3.598e-2960.87Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP11_ORYSJ6.138e-2965.93Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ARATH8.016e-2963.33Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]
EXP22_ARATH8.016e-2963.33Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP13_ORYSJ8.016e-2963.04Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11AG07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263235 ID=DY263235; Name=DY263235; organism=Citrus clementina; type=EST; length=1325bp
TGAATACGGCGGCTCTCAGTACGGCGCTGTTCAACAACGGCTTGATCTGC
GGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGACCCGCAATGGTGTAACCC
GGGTAACCCGGCCATTCTGATCACGGCGACAAACTTTTGCCCCCCGAACT
TCGCTCAGCCCTCCGATAATGGCGGGTGGTGCAACCCTCCTCGCCCTCAT
TTCGATCTGGCCATGCCTATGTTCCTCAAGCTCGCCCAGTACCGCGCTGG
TATCGTCCCCGTTTCTTACCGCAGGTGAGTGTTGGAGTTACTGTCGATTT
TACTCAAATGCCCCTGCTAAAGTTTACATTTTTATTTAATATGTGTTTTC
TTTTCTTTGTCTCCAAGTTTTGTTTGAATGTCTTCTTTGGAAGAAATACC
GGAAACCCGGGAAAAAGTCGGGCTGTTTAATGTGTGTTTTTATTTTAATA
TTTTCCCTTTTCTTTTCTTCGCAAACAAACAGAACCCGGAAATAAGTTTA
CTGATCAGTAGTTTATGTCGTTTATCCCAACATAGCCAACGGCAAACCGT
TCAGCCCTTGTGCCTTTTTCACCCTTGTACTTTTCGGTGTTGTTTAAATT
ATAATTATTTTTATAACTAAAATATGCTCGCATGTATGTAATTGTTTAAT
TTGTACGAGGACATTGTCGTCAAATAAAATAAGGGTGCTTTAGTAATTTT
ACGTTTCTCAAATATTACCGGAAAATCAGGATTGGGTGGTGGTTCTAAGT
CAGAAAATCTGGGGCACAGTTCACGTTCTCCCACGCGTGTGTCTGTTCAC
AATTTTTTTGGGACCTTGTACCTAATTACTGAAATATTTATTTTTTAATT
TTTTTAACCAGTCAAGGTTTTAGTCTTCAAACGGGGGCCTAAAGTTGCCC
TCAAACCGTAGGGGACTGTTAGGGCAGGTCTTAACTGCGACGTTACCCAT
TTTTTAAATAATTATATTATTTTGTCTTTGCAGGGTGCCCTGCAAAAAGC
AAGGCGAATTCAAATCACATTAAACGGTTTCCGTTCTTTCACTTGGTCCT
GGGTCCCCAACGCCCCGGGGGGCGGGGGAAATTCCGGGCCCTGGACCTTG
AAAGGGGGCCAACCCCAAATGGGCTGAACATGGACCCCCACTGGGGGAAA
AAACGGGGCAACCACACCCCCTCCCTCCGGGGGCCCGGAGCCTTTTTTTT
TTAAAAATCCCGGGGGGAGGGGGCAAAGAAGGAGCCCCTACCCCCCTTTG
GTGAAAGATGGGGCCCCCCGCGGCAAAAATTGGGAGGCGTTTGGGGGGTT
AACACCCCCTTTTTCTGTGTGGGAA
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