DY263235

Overview
NameDY263235
Unique NameDY263235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1325
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.047e-28
Identity = 57/91 (62.64%), Postives = 68/91 (74.73%), Query Frame = 3
Query:    9 AALSTALFNNGLICGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            AALSTALFN+G  CG C+++ C     PQWC PG   + ITATNFCPPN+  PSDNGGWCNPPRPHFD+A P + K+  Y AGI+PV Y+R
Sbjct:   75 AALSTALFNDGASCGQCYKIACDRKRAPQWCKPG-VTVTITATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGVYSAGIIPVIYQR 164          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 1.367e-28
Identity = 57/91 (62.64%), Postives = 68/91 (74.73%), Query Frame = 3
Query:    9 AALSTALFNNGLICGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            AALSTALFN+G  CG C+++ C     PQWC PG   + ITATNFCPPN+  PSDNGGWCNPPRPHFD+A P + K+  Y AGI+PV Y+R
Sbjct:   70 AALSTALFNDGASCGQCYKIACDRKRAPQWCKPG-VTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQR 159          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.786e-28
Identity = 55/90 (61.11%), Postives = 67/90 (74.44%), Query Frame = 3
Query:    6 TAALSTALFNNGLICGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            T A+ST LF  G  CGAC+E+KC   P  C  G   +++TATN CPPN  Q +DNGGWCNPPR HFDL+MP FL++AQ +AGIVP+SYRR
Sbjct:   77 TVAVSTPLFGAGAGCGACYEVKCVDSPDGCKVGAAPLVVTATNLCPPNPGQSNDNGGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRR 166          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 5.196e-28
Identity = 58/91 (63.74%), Postives = 67/91 (73.63%), Query Frame = 3
Query:    6 TAALSTALFNNGLICGACFELKCGG-DPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            TAALSTALFN G  CGACF + C     QWC PG  +I +TATNFCPPN+A   D GGWCNPPR HFD++ P +  +A YRAGIVPV+YRR
Sbjct:   60 TAALSTALFNGGASCGACFTIACDTRKTQWCKPGT-SITVTATNFCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRR 149          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXPA3_ORYSJ (Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXPA3 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 6.786e-28
Identity = 53/90 (58.89%), Postives = 70/90 (77.78%), Query Frame = 3
Query:    9 AALSTALFNNGLICGACFELKCG-GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            AALS+ALFN+G +CGAC+ + C     +WC PG  +I ITATN CPPN+A PS++GGWCNPPR HFD++ P +  +A Y+AGIVPV+Y+R
Sbjct:   64 AALSSALFNDGAMCGACYTITCDTSQTKWCKPGGNSITITATNLCPPNWALPSNSGGWCNPPRQHFDMSQPAWENIAVYQAGIVPVNYKR 153          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 3.368e-27
Identity = 54/93 (58.06%), Postives = 70/93 (75.27%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKC--GGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            NTAALS+ LFN+G  CG C+ + C     PQWC  G  A+ ITATN CPPN+A PS++GGWCNPPRPHFD+A P +L++  Y+AGI+PV Y++
Sbjct:   61 NTAALSSVLFNDGWSCGQCYLIMCDAAATPQWCRAG-AAVTITATNLCPPNWALPSNSGGWCNPPRPHFDMAEPAWLQIGIYKAGIIPVLYQQ 152          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP33_ORYSJ (Expansin-A33 OS=Oryza sativa subsp. japonica GN=EXPA33 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 9.799e-27
Identity = 53/92 (57.61%), Postives = 69/92 (75.00%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKCG-GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            N AALS+ALFN+G +CGAC+ + C      WC PG  +I ITATN CPPN+A+ SD GGWCNPPR HFD++ P +  +A Y+AGIVPV+++R
Sbjct:   57 NNAALSSALFNDGAMCGACYTIACDTSQSTWCKPGT-SITITATNLCPPNYAKKSDAGGWCNPPRKHFDMSQPAWTSIAIYQAGIVPVNFKR 147          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP11_ARATH (Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.672e-26
Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = 3
Query:    6 TAALSTALFNNGLICGACFELKC--GGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            TAALSTALFN+G  CG C+ + C    D +WC  G  +++ITATNFCPPNFA P++NGGWCNPP  HFD+A P + K+  YR GIVPV ++R
Sbjct:   61 TAALSTALFNDGASCGECYRITCDHAADSRWCLKG-ASVVITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQR 151          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.851e-26
Identity = 54/93 (58.06%), Postives = 69/93 (74.19%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGG--WCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            +TAALST LF +G  CG C++++C G    C  G+PAI +TATN CPPN+A+  D GG  WCNPPR HFDL+ P F+++A +RAGIVPV YRR
Sbjct:   71 DTAALSTTLFKDGYGCGTCYQMRCVGTAS-CYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRR 162          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.851e-26
Identity = 55/97 (56.70%), Postives = 71/97 (73.20%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKCGG----DPQWCNP--GNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            +TAALS  +F +GL CGACFEL+CGG    D + C P     +I++TAT+ CP N A P D GGWCNPP  HFDL+ P FL++A++++GIVPVSYRR
Sbjct:   64 DTAALSAVMFGDGLSCGACFELRCGGGGGGDRRGCLPPAAGKSIVVTATDLCPANHALPGDRGGWCNPPLHHFDLSQPAFLRIARFQSGIVPVSYRR 160          
The following BLAST results are available for this feature:
BLAST of DY263235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXP23_ORYSJ1.047e-2862.64Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP14_ORYSJ1.367e-2862.64Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP32_ORYSJ1.786e-2861.11Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA8_ORYSJ5.196e-2863.74Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA3_ORYSJ6.786e-2858.89Expansin-A3 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP25_ORYSJ3.368e-2758.06Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP33_ORYSJ9.799e-2757.61Expansin-A33 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP11_ARATH1.672e-2658.70Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=... [more]
EXP30_ORYSJ2.851e-2658.06Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP21_ORYSJ2.851e-2656.70Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11AG07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263235 ID=DY263235; Name=DY263235; organism=Citrus clementina; type=EST; length=1325bp
TGAATACGGCGGCTCTCAGTACGGCGCTGTTCAACAACGGCTTGATCTGC
GGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGACCCGCAATGGTGTAACCC
GGGTAACCCGGCCATTCTGATCACGGCGACAAACTTTTGCCCCCCGAACT
TCGCTCAGCCCTCCGATAATGGCGGGTGGTGCAACCCTCCTCGCCCTCAT
TTCGATCTGGCCATGCCTATGTTCCTCAAGCTCGCCCAGTACCGCGCTGG
TATCGTCCCCGTTTCTTACCGCAGGTGAGTGTTGGAGTTACTGTCGATTT
TACTCAAATGCCCCTGCTAAAGTTTACATTTTTATTTAATATGTGTTTTC
TTTTCTTTGTCTCCAAGTTTTGTTTGAATGTCTTCTTTGGAAGAAATACC
GGAAACCCGGGAAAAAGTCGGGCTGTTTAATGTGTGTTTTTATTTTAATA
TTTTCCCTTTTCTTTTCTTCGCAAACAAACAGAACCCGGAAATAAGTTTA
CTGATCAGTAGTTTATGTCGTTTATCCCAACATAGCCAACGGCAAACCGT
TCAGCCCTTGTGCCTTTTTCACCCTTGTACTTTTCGGTGTTGTTTAAATT
ATAATTATTTTTATAACTAAAATATGCTCGCATGTATGTAATTGTTTAAT
TTGTACGAGGACATTGTCGTCAAATAAAATAAGGGTGCTTTAGTAATTTT
ACGTTTCTCAAATATTACCGGAAAATCAGGATTGGGTGGTGGTTCTAAGT
CAGAAAATCTGGGGCACAGTTCACGTTCTCCCACGCGTGTGTCTGTTCAC
AATTTTTTTGGGACCTTGTACCTAATTACTGAAATATTTATTTTTTAATT
TTTTTAACCAGTCAAGGTTTTAGTCTTCAAACGGGGGCCTAAAGTTGCCC
TCAAACCGTAGGGGACTGTTAGGGCAGGTCTTAACTGCGACGTTACCCAT
TTTTTAAATAATTATATTATTTTGTCTTTGCAGGGTGCCCTGCAAAAAGC
AAGGCGAATTCAAATCACATTAAACGGTTTCCGTTCTTTCACTTGGTCCT
GGGTCCCCAACGCCCCGGGGGGCGGGGGAAATTCCGGGCCCTGGACCTTG
AAAGGGGGCCAACCCCAAATGGGCTGAACATGGACCCCCACTGGGGGAAA
AAACGGGGCAACCACACCCCCTCCCTCCGGGGGCCCGGAGCCTTTTTTTT
TTAAAAATCCCGGGGGGAGGGGGCAAAGAAGGAGCCCCTACCCCCCTTTG
GTGAAAGATGGGGCCCCCCGCGGCAAAAATTGGGAGGCGTTTGGGGGGTT
AACACCCCCTTTTTCTGTGTGGGAA
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