DY263235

Overview
NameDY263235
Unique NameDY263235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1325
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 3.724e-26
Identity = 54/91 (59.34%), Postives = 67/91 (73.63%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            +TAALST LFN+G  CG CF++ C   P  C  G   + +TATN CPPN+ Q S+ GGWCNPPR HFD+A P F+KLA +RAGI+PV+YRR
Sbjct:   71 STAALSTTLFNDGYGCGQCFQITCSKSPH-CYSGKSTV-VTATNLCPPNWYQDSNAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRR 159          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP31_ORYSJ (Expansin-A31 OS=Oryza sativa subsp. japonica GN=EXPA31 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 3.724e-26
Identity = 53/93 (56.99%), Postives = 67/93 (72.04%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            + AALS ALFN+G  CG C+ + C     PQWC  G  A+ +TATN CPPN+A PSD GGWCNPPRPHFD++ P + ++  Y+AGIVPV Y+R
Sbjct:   62 DNAALSQALFNDGASCGQCYLIVCDTSRAPQWCKAGT-AVTVTATNLCPPNWALPSDGGGWCNPPRPHFDMSQPAWEQIGVYQAGIVPVLYQR 153          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 3.724e-26
Identity = 54/91 (59.34%), Postives = 66/91 (72.53%), Query Frame = 3
Query:    9 AALSTALFNNGLICGACFELKCGGDP--QWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            AALSTALFN+G  CG C+ + C  D   +WC P   A+ +TATN CPPN+A PSD GGWCNPPR HFD++ P + ++  YRAGIVPV YRR
Sbjct:   63 AALSTALFNDGAACGQCYLIVCDTDKAGRWCKPRG-AVTVTATNLCPPNWALPSDGGGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRR 152          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 6.352e-26
Identity = 52/93 (55.91%), Postives = 69/93 (74.19%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKCG--GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            NTAALS+ALFN+G  CG C+++ C    +P+WC  G   + IT TN CPPN+A  S++GGWCNPPR HFD+A P +L++  Y+AGIVPV Y+R
Sbjct:   66 NTAALSSALFNDGASCGQCYQIACDHQAEPRWCLQGR-TVTITGTNLCPPNYALSSNDGGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQR 157          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP12_ORYSJ (Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.083e-25
Identity = 49/92 (53.26%), Postives = 71/92 (77.17%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKCG-GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            NTAALS+ALFN+G  CG C+++ C   + +WC  G  ++ ITATN CPP++++PS++GGWCNPPR HFD+A P + ++  YR GIVPV+++R
Sbjct:   58 NTAALSSALFNDGAACGECYQITCDQSNSKWCKAGT-SVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQR 148          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 3.152e-25
Identity = 52/91 (57.14%), Postives = 65/91 (71.43%), Query Frame = 3
Query:    9 AALSTALFNNGLICGACFELKCGGD--PQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            AALSTALFN G  CG C+ + C     P+WC  G  A+ ITATN CPPN+A  +D+GGWCNPPRPHFD++ P +  +  YRAGIVPV Y++
Sbjct:   63 AALSTALFNGGASCGQCYLIMCDASKTPEWCKAGT-AVTITATNLCPPNWALANDDGGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQ 152          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXPA1_ORYSJ (Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 5.377e-25
Identity = 53/93 (56.99%), Postives = 66/93 (70.97%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKCG--GDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            NTAALST LFN+G  CG C+ + C    D ++C  G  ++ ITATN CPPN+A P+D GGWCNPPR HFD+A P +LK+  Y  GIVPV Y+R
Sbjct:   68 NTAALSTVLFNDGASCGQCYRIMCDYQADRRFCISGT-SVTITATNLCPPNYALPNDAGGWCNPPRQHFDMAEPAWLKIGVYVGGIVPVMYQR 159          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 9.172e-25
Identity = 54/90 (60.00%), Postives = 66/90 (73.33%), Query Frame = 3
Query:    6 TAALSTALFNNGLICGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            TAALSTALF+ GL CGACFEL C  DPQWC  G  +I++TATNFCPP        GG C+PP  HFDL+ P++ K+A Y++GI+PV YRR
Sbjct:   73 TAALSTALFDQGLSCGACFELMCVNDPQWCIKGR-SIVVTATNFCPP--------GGACDPPNHHFDLSQPIYEKIALYKSGIIPVMYRR 153          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.121e-22
Identity = 46/92 (50.00%), Postives = 64/92 (69.57%), Query Frame = 3
Query:    3 NTAALSTALFNNGLICGACFELKCGGDP-QWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            NT ALS+AL+ +G  CGAC+ + C     +WC  G  ++ +TATN+CPPN+++  D GGWCNPPR HFD++ P +  +A Y +GIVPV Y R
Sbjct:   61 NTTALSSALYGDGASCGACYLVTCDASATRWCKNGT-SVTVTATNYCPPNYSESGDAGGWCNPPRRHFDMSQPAWEAIAVYSSGIVPVRYAR 151          
BLAST of DY263235 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.121e-22
Identity = 48/90 (53.33%), Postives = 63/90 (70.00%), Query Frame = 3
Query:    6 TAALSTALFNNGLICGACFELKCGGDPQWCNPGNPAILITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKLAQYRAGIVPVSYRR 275
            T  LSTALF  G  CG C+E+KC  D ++C PG  +I++TATNFC PNF  P+D GG CNPP  HF L +  F K+A ++AG++P+ YRR
Sbjct:   67 TVGLSTALFERGAACGGCYEVKCVDDLKYCLPGT-SIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRR 155          
The following BLAST results are available for this feature:
BLAST of DY263235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXPA7_ARATH3.724e-2659.34Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ... [more]
EXP31_ORYSJ3.724e-2656.99Expansin-A31 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP27_ORYSJ3.724e-2659.34Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP15_ORYSJ6.352e-2655.91Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ORYSJ1.083e-2553.26Expansin-A12 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP28_ORYSJ3.152e-2557.14Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA1_ORYSJ5.377e-2556.99Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA5_ARATH9.172e-2560.00Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXPA9_ORYSJ1.121e-2250.00Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP10_ORYSJ1.121e-2253.33Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA11AG07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY263235 ID=DY263235; Name=DY263235; organism=Citrus clementina; type=EST; length=1325bp
TGAATACGGCGGCTCTCAGTACGGCGCTGTTCAACAACGGCTTGATCTGC
GGCGCGTGCTTCGAGTTAAAGTGCGGCGGCGACCCGCAATGGTGTAACCC
GGGTAACCCGGCCATTCTGATCACGGCGACAAACTTTTGCCCCCCGAACT
TCGCTCAGCCCTCCGATAATGGCGGGTGGTGCAACCCTCCTCGCCCTCAT
TTCGATCTGGCCATGCCTATGTTCCTCAAGCTCGCCCAGTACCGCGCTGG
TATCGTCCCCGTTTCTTACCGCAGGTGAGTGTTGGAGTTACTGTCGATTT
TACTCAAATGCCCCTGCTAAAGTTTACATTTTTATTTAATATGTGTTTTC
TTTTCTTTGTCTCCAAGTTTTGTTTGAATGTCTTCTTTGGAAGAAATACC
GGAAACCCGGGAAAAAGTCGGGCTGTTTAATGTGTGTTTTTATTTTAATA
TTTTCCCTTTTCTTTTCTTCGCAAACAAACAGAACCCGGAAATAAGTTTA
CTGATCAGTAGTTTATGTCGTTTATCCCAACATAGCCAACGGCAAACCGT
TCAGCCCTTGTGCCTTTTTCACCCTTGTACTTTTCGGTGTTGTTTAAATT
ATAATTATTTTTATAACTAAAATATGCTCGCATGTATGTAATTGTTTAAT
TTGTACGAGGACATTGTCGTCAAATAAAATAAGGGTGCTTTAGTAATTTT
ACGTTTCTCAAATATTACCGGAAAATCAGGATTGGGTGGTGGTTCTAAGT
CAGAAAATCTGGGGCACAGTTCACGTTCTCCCACGCGTGTGTCTGTTCAC
AATTTTTTTGGGACCTTGTACCTAATTACTGAAATATTTATTTTTTAATT
TTTTTAACCAGTCAAGGTTTTAGTCTTCAAACGGGGGCCTAAAGTTGCCC
TCAAACCGTAGGGGACTGTTAGGGCAGGTCTTAACTGCGACGTTACCCAT
TTTTTAAATAATTATATTATTTTGTCTTTGCAGGGTGCCCTGCAAAAAGC
AAGGCGAATTCAAATCACATTAAACGGTTTCCGTTCTTTCACTTGGTCCT
GGGTCCCCAACGCCCCGGGGGGCGGGGGAAATTCCGGGCCCTGGACCTTG
AAAGGGGGCCAACCCCAAATGGGCTGAACATGGACCCCCACTGGGGGAAA
AAACGGGGCAACCACACCCCCTCCCTCCGGGGGCCCGGAGCCTTTTTTTT
TTAAAAATCCCGGGGGGAGGGGGCAAAGAAGGAGCCCCTACCCCCCTTTG
GTGAAAGATGGGGCCCCCCGCGGCAAAAATTGGGAGGCGTTTGGGGGGTT
AACACCCCCTTTTTCTGTGTGGGAA
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